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Praeg N, Steinwandter M, Urbach D, Snethlage MA, Alves RP, Apple ME, Bilovitz P, Britton AJ, Bruni EP, Chen TW, Dumack K, Fernandez-Mendoza F, Freppaz M, Frey B, Fromin N, Geisen S, Grube M, Guariento E, Guisan A, Ji QQ, Jiménez JJ, Maier S, Malard LA, Minor MA, Mc Lean CC, Mitchell EAD, Peham T, Pizzolotto R, Taylor AFS, Vernon P, van Tol JJ, Wu D, Wu Y, Xie Z, Weber B, Illmer P, Seeber J. Biodiversity in mountain soils above the treeline. Biol Rev Camb Philos Soc 2025. [PMID: 40369817 DOI: 10.1111/brv.70028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 04/04/2025] [Accepted: 04/17/2025] [Indexed: 05/16/2025]
Abstract
Biological diversity in mountain ecosystems has been increasingly studied over the last decade. This is also the case for mountain soils, but no study to date has provided an overall synthesis of the current state of knowledge. Here we fill this gap with a first global analysis of published research on cryptogams, microorganisms, and fauna in mountain soils above the treeline, and a structured synthesis of current knowledge. Based on a corpus of almost 1400 publications and the expertise of 37 mountain soil scientists worldwide, we summarise what is known about the diversity and distribution patterns of each of these organismal groups, specifically along elevation, and provide an overview of available knowledge on the drivers explaining these patterns and their changes. In particular, we document an elevation-dependent decrease in faunal diversity above the treeline, while for cryptogams there is an initial increase above the treeline, followed by a decrease towards the nival belt. Thus, our data confirm the key role that elevation plays in shaping the biodiversity and distribution of these organisms in mountain soils. The response of prokaryote diversity to elevation, in turn, was more diverse, whereas fungal diversity appeared to be substantially influenced by plants. As far as available, we describe key characteristics, adaptations, and functions of mountain soil species, and despite a lack of ecological information about the uncultivated majority of prokaryotes, fungi, and protists, we illustrate the remarkable and unique diversity of life forms and life histories encountered in alpine mountain soils. By applying rule- as well as pattern-based literature-mining approaches and semi-quantitative analyses, we identified hotspots of mountain soil research in the European Alps and Central Asia and revealed significant gaps in taxonomic coverage, particularly among biocrusts, soil protists, and soil fauna. We further report thematic priorities for research on mountain soil biodiversity above the treeline and identify unanswered research questions. Building upon the outcomes of this synthesis, we conclude with a set of research opportunities for mountain soil biodiversity research worldwide. Soils in mountain ecosystems above the treeline fulfil critical functions and make essential contributions to life on land. Accordingly, seizing these opportunities and closing knowledge gaps appears crucial to enable science-based decision making in mountain regions and formulating laws and guidelines in support of mountain soil biodiversity conservation targets.
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Affiliation(s)
- Nadine Praeg
- Department of Microbiology, Universität Innsbruck, Technikerstrasse 25d, Innsbruck, 6020, Austria
| | - Michael Steinwandter
- Institute for Alpine Environment, Eurac Research, Viale Druso 1, Bozen/Bolzano, 39100, Italy
| | - Davnah Urbach
- Global Mountain Biodiversity Assessment (GMBA), University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Centre Interdisciplinaire de Recherche sur la Montagne, University of Lausanne, Ch. de l'Institut 18, Bramois/Sion, 1967, Switzerland
| | - Mark A Snethlage
- Global Mountain Biodiversity Assessment (GMBA), University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, Bern, 3013, Switzerland
- Centre Interdisciplinaire de Recherche sur la Montagne, University of Lausanne, Ch. de l'Institut 18, Bramois/Sion, 1967, Switzerland
| | - Rodrigo P Alves
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Martha E Apple
- Department of Biological Sciences, Montana Technological University, Butte, 59701, MT, USA
| | - Peter Bilovitz
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Andrea J Britton
- Ecological Sciences, The James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH, Scotland, UK
| | - Estelle P Bruni
- Laboratory of Soil Biodiversity, University of Neuchâtel, Rue Emile-Argand 11, Neuchâtel, 2000, Switzerland
| | - Ting-Wen Chen
- Biology Centre of the Czech Academy of Sciences, Institute of Soil Biology and Biogeochemistry, Na Sádkách 702/7, České Budějovice, 37005, Czech Republic
- J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, Göttingen, 37073, Germany
| | - Kenneth Dumack
- Terrestrial Ecology, Cologne Biocenter, University of Cologne, Zülpicher Strasse 47b, Cologne, 50674, Germany
| | - Fernando Fernandez-Mendoza
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Michele Freppaz
- Department of Agricultural, Forest and Food Sciences, University of Turin, Largo Paolo Braccini 2, Grugliasco, 10095, Italy
- Research Center on Natural Risks in Mountain and Hilly Environments, University of Turin, Largo Paolo Braccini 2, Grugliasco, 10095, Italy
| | - Beat Frey
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, 8903, Switzerland
| | - Nathalie Fromin
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Route de Mende 34199, Montpellier Cedex 5, France
| | - Stefan Geisen
- Laboratory of Nematology, Wageningen University and Research, Droevendaalsesteeg 1, Wageningen 6708PB, The Netherlands
| | - Martin Grube
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Elia Guariento
- Institute for Alpine Environment, Eurac Research, Viale Druso 1, Bozen/Bolzano, 39100, Italy
| | - Antoine Guisan
- Department of Ecology and Evolution (DEE), University of Lausanne, Biophore, Lausanne, 1015, Switzerland
- Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Géopolis, Lausanne, 1015, Switzerland
| | - Qiao-Qiao Ji
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, 130102, China
| | - Juan J Jiménez
- Instituto Pirenaico de Ecología (IPE), Consejo Superior de Investigaciones Cientificas (CSIC), Avda. Ntra. Sra. de la Victoria 16, Jaca, 22700, Huesca, Spain
| | - Stefanie Maier
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Lucie A Malard
- Department of Ecology and Evolution (DEE), University of Lausanne, Biophore, Lausanne, 1015, Switzerland
| | - Maria A Minor
- School of Food Technology and Natural Sciences, Massey University, Riddett Road, Palmerston North, 4410, New Zealand
| | - Cowan C Mc Lean
- Department of Soil, Crop and Climate Sciences, University of the Free State, 205 Nelson Mandela Drive, Bloemfontein, 9300, South Africa
| | - Edward A D Mitchell
- Laboratory of Soil Biodiversity, University of Neuchâtel, Rue Emile-Argand 11, Neuchâtel, 2000, Switzerland
| | - Thomas Peham
- Department of Ecology, Universität Innsbruck, Technikerstrasse 25, Innsbruck, 6020, Austria
| | - Roberto Pizzolotto
- Dipartimento di Biologia, Ecologia e Scienze della Terra, University of Calabria, Ponte Pietro Bucci 4b, Rende, 87036, Italy
| | - Andy F S Taylor
- Ecological Sciences, The James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH, Scotland, UK
| | - Philippe Vernon
- UMR 6553 EcoBio CNRS, University of Rennes, Biological Station, Paimpont, 35380, France
| | - Johan J van Tol
- Department of Soil, Crop and Climate Sciences, University of the Free State, 205 Nelson Mandela Drive, Bloemfontein, 9300, South Africa
| | - Donghui Wu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, 130102, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, 2555 Jingyue Street, Changchun, 130117, China
| | - Yunga Wu
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, 2555 Jingyue Street, Changchun, 130117, China
| | - Zhijing Xie
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, 2555 Jingyue Street, Changchun, 130117, China
| | - Bettina Weber
- Institute of Biology, Division of Plant Sciences, University of Graz, Holteigasse 6, Graz, 8010, Austria
| | - Paul Illmer
- Department of Microbiology, Universität Innsbruck, Technikerstrasse 25d, Innsbruck, 6020, Austria
| | - Julia Seeber
- Institute for Alpine Environment, Eurac Research, Viale Druso 1, Bozen/Bolzano, 39100, Italy
- Department of Ecology, Universität Innsbruck, Technikerstrasse 25, Innsbruck, 6020, Austria
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Marian M, Antonielli L, Pertot I, Perazzolli M. Amplicon sequencing and culture-dependent approaches reveal core bacterial endophytes aiding freezing stress tolerance in alpine Rosaceae plants. mBio 2025; 16:e0141824. [PMID: 39998219 PMCID: PMC11980557 DOI: 10.1128/mbio.01418-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 01/21/2025] [Indexed: 02/26/2025] Open
Abstract
Wild plants growing in alpine regions are associated with endophytic microbial communities that may support plant growth and survival under cold conditions. The structure and function of endophytic bacterial communities were characterized in flowers, leaves, and roots of three alpine Rosaceae plants in Alpine areas using a combined amplicon sequencing and culture-dependent approaches to determine the role of core taxa on plant freezing stress tolerance. Amplicon sequencing analysis revealed that plant tissue, collection site, and host plant are the main factors affecting the richness, diversity, and taxonomic structure of endophytic bacterial communities in alpine Rosaceae plants. Core endophytic bacterial taxa were identified as 31 amplicon sequence variants highly prevalent across all plant tissues. Psychrotolerant bacterial endophytes belonging to the core taxa of Duganella, Erwinia, Pseudomonas, and Rhizobium genera mitigated freezing stress in strawberry plants, demonstrating the beneficial role of endophytic bacterial communities and their potential use for cold stress mitigation in agriculture.IMPORTANCEFreezing stress is one of the major abiotic stresses affecting fruit production in Rosaceae crops. Current strategies to reduce freezing damage include physical and chemical methods, which have several limitations in terms of costs, efficacy, feasibility, and environmental impacts. The use or manipulation of plant-associated microbial communities was proposed as a promising sustainable approach to alleviate cold stress in crops, but no information is available on the possible mitigation of freezing stress in Rosaceae plants. A combination of amplicon sequencing, culture-dependent, and plant bioassay approaches revealed the beneficial role of the endophytic bacterial communities in alpine Rosaceae plants. In particular, we showed that culturable psychrotolerant bacterial endophytes belonging to the core taxa of Duganella, Erwinia, Pseudomonas, and Rhizobium genera can mitigate freezing stress on strawberry seedlings. Overall, this study demonstrates the potential use of psychrotolerant bacterial endophytes for the development of biostimulants for cold stress mitigation in agriculture.
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Affiliation(s)
- Malek Marian
- Center Agriculture Food Environment (C3A), University of Trento, San Michele all'Adige, Italy
| | - Livio Antonielli
- Center for Health & Bioresources, Bioresources Unit, AIT Austrian Institute of Technology, Tulln, Austria
| | - Ilaria Pertot
- Center Agriculture Food Environment (C3A), University of Trento, San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy
| | - Michele Perazzolli
- Center Agriculture Food Environment (C3A), University of Trento, San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy
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Zhang Y, Hogan JA, Ye Y, Liu X, Song M, Chen J, Sun H. Decoupled responses of soil microbial diversity and ecosystem functions to successive degeneration processes in alpine pioneer community. SCIENCE CHINA. LIFE SCIENCES 2025:10.1007/s11427-024-2692-5. [PMID: 39862343 DOI: 10.1007/s11427-024-2692-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 08/24/2024] [Indexed: 01/27/2025]
Abstract
Many alpine ecosystems are undergoing vegetation degradation because of global changes, which are affecting ecosystem functioning and biodiversity. The ecological consequences of alpine pioneer community degradation have been less studied than glacial retreat or meadow degradation in alpine ecosystems. We document the comprehensive responses of microbial community characteristics to degradation processes using field-based sampling, conduct soil microcosm experiments to simulate the effects of global change on microorganisms, and explore their relationships to ecosystem functioning across stages of alpine pioneer community degradation. Our work provides the first evidence that alpine pioneer community degradation led to declines of 27% in fungal richness, 8% in bacterial richness, and about 50% in endemic microorganisms. As vegetation degraded, key ecosystem functions such as nutrient availability, soil enzymatic activity, microbial biomass, and ecosystem multifunctionality progressively increased. However, soil respiration rate and carbon storage exhibited unbalanced dynamics. Respiration rate increased by 190% during the middle stage of degradation compared with the primary stage, and it decreased by 38% in the later stage. This indicates that soil carbon loss or emission increases during the mid-successional stage, whereas in later successional stages, alpine meadows become significant carbon sinks. Compared with microbial community characteristics (such as richness of total and functional taxa, and network complexity), community resistance contributes more significantly to ecosystem functions. Especially, the bacterial community resistance is crucial for ecosystem functioning, yet it is greatly impaired by nitrogen addition. Based on microbial network, community assembly, and community resistance analyses, we conclude that fungi are more vulnerable to environmental changes and show smaller contributions to ecosystem functions than bacteria in degrading alpine ecosystems. Our findings enhance the knowledge of the distinct and synergistic functional contributions of microbial communities in degrading alpine ecosystems and offer guidance for developing restoration strategies that optimize ecosystem functioning of degraded alpine plant communities.
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Affiliation(s)
- Yazhou Zhang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - J Aaron Hogan
- USDA Forest Service, International Institute of Tropical Forestry, San Juan, Puerto Rico, 00926-1119, USA
| | - Yaojun Ye
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- School of Life Sciences, Yunnan Normal University, Kunming, 650500, China
| | - Xin Liu
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- School of Ecology and Environment, Southwest Forestry University, Kunming, 650224, China
| | - Minshu Song
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Jianguo Chen
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
| | - Hang Sun
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
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Shi L, Zhang L, Yang Y, Zhang H, Yao R, Yuan C, Cheng S. In Situ Nano-SiO 2 Electrospun Polyethylene-Oxide-Based Nano-Fiber Composite Solid Polymer Electrolyte for High-Performance Lithium-Ion Batteries. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:1294. [PMID: 37049387 PMCID: PMC10096893 DOI: 10.3390/nano13071294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Revised: 04/02/2023] [Accepted: 04/05/2023] [Indexed: 06/19/2023]
Abstract
Polyethylene oxide (PEO)-based composite polymer electrolytes (CPEs) containing in situ SiO2 fillers are prepared using an electrostatic spinning method at room temperature. Through the in situ hydrolysis of tetraethyl silicate (TEOS), the generated SiO2 nanospheres are uniformly dispersed in the PEO matrix to form a 3D ceramic network, which enhances the mechanical properties of the electrolyte as a reinforcing phase. The interaction between SiO2 nanospheres and PEO chains results in chemical bonding with a decrease in the crystallinity of the PEO matrix, as well as the complexation strength of PEO chains with lithium ions during the hydrolysis process. Meanwhile, the addition of SiO2 nanospheres can disturb the orderliness of PEO chain segments and further suppress the crystallization of the PEO matrix. Therefore, improved mechanical/electrochemical properties can be obtained in the as-spun electrolyte with the unique one-dimensional high-speed ion channels. The electrospun CPE with in situ SiO2 (10 wt%, ca. 45 nm) has a higher ionic conductivity of 1.03 × 10-3 S cm-1 than that of the mechanical blending one. Meanwhile, the upper limit of the electrochemical stability window is up to 5.5 V versus Li+/Li, and a lithium-ion migration number can be of up to 0.282 at room temperature. In addition, in situ SiO2 electrospun CPE achieves a tensile strength of 1.12 MPa, elongation at the break of 488.1%, and it has an excellent plasticity. All in all, it is expected that the electrospun CPE prepared in this study is a promising one for application in an all-solid-state lithium-ion battery (LIB) with a high energy density, long life cycle, and high safety.
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Affiliation(s)
- Luwei Shi
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
| | - Longxing Zhang
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
| | - Yanping Yang
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
- School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Haipeng Zhang
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
| | - Ruijie Yao
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
| | - Caoquan Yuan
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
| | - Shaobo Cheng
- School of Materials Science and Engineering, Shanghai University of Engineering Science, Shanghai 201620, China; (L.S.); (L.Z.)
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Marian M, Licciardello G, Vicelli B, Pertot I, Perazzolli M. Ecology and potential functions of plant-associated microbial communities in cold environments. FEMS Microbiol Ecol 2022; 98:fiab161. [PMID: 34910139 PMCID: PMC8769928 DOI: 10.1093/femsec/fiab161] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 12/13/2021] [Indexed: 11/13/2022] Open
Abstract
Complex microbial communities are associated with plants and can improve their resilience under harsh environmental conditions. In particular, plants and their associated communities have developed complex adaptation strategies against cold stress. Although changes in plant-associated microbial community structure have been analysed in different cold regions, scarce information is available on possible common taxonomic and functional features of microbial communities across cold environments. In this review, we discuss recent advances in taxonomic and functional characterization of plant-associated microbial communities in three main cold regions, such as alpine, Arctic and Antarctica environments. Culture-independent and culture-dependent approaches are analysed, in order to highlight the main factors affecting the taxonomic structure of plant-associated communities in cold environments. Moreover, biotechnological applications of plant-associated microorganisms from cold environments are proposed for agriculture, industry and medicine, according to biological functions and cold adaptation strategies of bacteria and fungi. Although further functional studies may improve our knowledge, the existing literature suggest that plants growing in cold environments harbor complex, host-specific and cold-adapted microbial communities, which may play key functional roles in plant growth and survival under cold conditions.
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Affiliation(s)
- Malek Marian
- Center Agriculture Food Environment (C3A), University of Trento, via E. Mach 1, 38098 San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38098 San Michele all'Adige, Italy
| | - Giorgio Licciardello
- Center Agriculture Food Environment (C3A), University of Trento, via E. Mach 1, 38098 San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38098 San Michele all'Adige, Italy
| | - Bianca Vicelli
- Center Agriculture Food Environment (C3A), University of Trento, via E. Mach 1, 38098 San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38098 San Michele all'Adige, Italy
| | - Ilaria Pertot
- Center Agriculture Food Environment (C3A), University of Trento, via E. Mach 1, 38098 San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38098 San Michele all'Adige, Italy
| | - Michele Perazzolli
- Center Agriculture Food Environment (C3A), University of Trento, via E. Mach 1, 38098 San Michele all'Adige, Italy
- Research and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38098 San Michele all'Adige, Italy
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Oberhofer M, Hess J, Leutgeb M, Gössnitzer F, Rattei T, Wawrosch C, Zotchev SB. Exploring Actinobacteria Associated With Rhizosphere and Endosphere of the Native Alpine Medicinal Plant Leontopodium nivale Subspecies alpinum. Front Microbiol 2019; 10:2531. [PMID: 31781058 PMCID: PMC6857621 DOI: 10.3389/fmicb.2019.02531] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 10/21/2019] [Indexed: 11/24/2022] Open
Abstract
The rhizosphere of plants is enriched in nutrients facilitating growth of microorganisms, some of which are recruited as endophytes. Endophytes, especially Actinobacteria, are known to produce a plethora of bioactive compounds. We hypothesized that Leontopodium nivale subsp. alpinum (Edelweiss), a rare alpine medicinal plant, may serve as yet untapped source for uncommon Actinobacteria associated with this plant. Rhizosphere soil of native Alpine plants was used, after physical and chemical pre-treatments, for isolating Actinobacteria. Isolates were selected based on morphology and identified by 16S rRNA gene-based barcoding. Resulting 77 Actinobacteria isolates represented the genera Actinokineospora, Kitasatospora, Asanoa, Microbacterium, Micromonospora, Micrococcus, Mycobacterium, Nocardia, and Streptomyces. In parallel, Edelweiss plants from the same location were surface-sterilized, separated into leaves, roots, rhizomes, and inflorescence and pooled within tissues before genomic DNA extraction. Metagenomic 16S rRNA gene amplicons confirmed large numbers of actinobacterial operational taxonomic units (OTUs) descending in diversity from roots to rhizomes, leaves and inflorescences. These metagenomic data, when queried with isolate sequences, revealed an overlap between the two datasets, suggesting recruitment of soil bacteria by the plant. Moreover, this study uncovered a profound diversity of uncultured Actinobacteria from Rubrobacteridae, Thermoleophilales, Acidimicrobiales and unclassified Actinobacteria specifically in belowground tissues, which may be exploited by a targeted isolation approach in the future.
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Affiliation(s)
- Martina Oberhofer
- Pharmaceutical Biotechnology, Department of Pharmacognosy, University of Vienna, Vienna, Austria
| | - Jaqueline Hess
- Division of Systematic and Evolutionary Botany, Department of Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Marlene Leutgeb
- Pharmaceutical Biotechnology, Department of Pharmacognosy, University of Vienna, Vienna, Austria
| | - Florian Gössnitzer
- Pharmaceutical Biotechnology, Department of Pharmacognosy, University of Vienna, Vienna, Austria
| | - Thomas Rattei
- Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Christoph Wawrosch
- Pharmaceutical Biotechnology, Department of Pharmacognosy, University of Vienna, Vienna, Austria
| | - Sergey B. Zotchev
- Pharmaceutical Biotechnology, Department of Pharmacognosy, University of Vienna, Vienna, Austria
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