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Tiwari V, Karmakar T. Atomistic Details of Nanocluster Formation from Machine-Learned-Potential-Based Simulations. NANO LETTERS 2025; 25:5940-5946. [PMID: 40163768 DOI: 10.1021/acs.nanolett.5c01340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
Abstract
Understanding the mechanism for the formation of metal nanoclusters is an open challenge in nanoscience. Computational modeling can provide molecular details of nanocluster formation that are otherwise inaccessible. However, simulating nanocluster nucleation in solution presents significant challenges, including inaccurate energy predictions and limitations on the system size and time scale. This work addresses these challenges by combining deep neural networks (DNNs) with well-tempered metadynamics (WT-MetaD) to model the nucleation of a prototypical nanocluster, Ag6(SCNH2)6 in methanol. A neural-network-potential-based unbiased molecular dynamics simulation captured the cluster's dynamic behavior, while WT-MetaD simulations revealed an almost barrierless transition from dispersed precursors to a nucleated state. The method's robustness was further demonstrated by scaling up to 30 randomly distributed precursors, which resulted in spontaneous nucleation. This study presents the first successful DNN model of nanocluster formation in solution with density-functional-theory-level accuracy, paving the way for advancements in the field.
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Affiliation(s)
- Vikas Tiwari
- Department of Chemistry, Indian Institute of Technology (IIT) Delhi, 110016 New Delhi, India
| | - Tarak Karmakar
- Department of Chemistry, Indian Institute of Technology (IIT) Delhi, 110016 New Delhi, India
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2
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A new [Cu4S6]-cluster compound with intense luminescence and repairasion effect on ischemia–reperfusion flaps. Polym Bull (Berl) 2022. [DOI: 10.1007/s00289-022-04113-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Qu Y, Zhao K, Wang C, Wu Y, Xia L, Wu H. Synthesis, crystal structure, fluorescent and electrochemical properties of three silver(I) complexes with 2,2’-(1,4-butanediyl)bis-1,3-benzimidazole bridging ligand. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127424] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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4
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Jiang JK, Li GM, Sun JN, Ju GS, Du JJ, Jin X. Crystal structure of poly[(μ2-4-amino-1,5-naphthalenedisulfonato-κ4O,N:O′, N′)bis(μ2-hexamethylenetetramino-κ2N;N′)silver(I)], {C22H30Ag2N9O6S2}n. Z KRIST-NEW CRYST ST 2019. [DOI: 10.1515/ncrs-2019-0326] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC22H30Ag2N9O6S2, monoclinic, P21/c (no. 14), a = 10.4629(10) Å, b = 10.9785(8) Å, c = 12.3483(15) Å, β = 109.766(12)°, V = 1334.8(2) Å3, Z = 2, Rgt(F) = 0.0662, wRref(F2) = 0.1356, T = 293(2) K.
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Affiliation(s)
- Jin-Ke Jiang
- College of Biology and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Province Jilin, P.R. China
| | - Gang-Mei Li
- College of Biology and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Province Jilin, P.R. China
| | - Jian-Nan Sun
- College of Biology and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Province Jilin, P.R. China
| | - Ge-Shuang Ju
- College of Biology and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Province Jilin, P.R. China
| | - Jing-Jie Du
- College of Food Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Province Jilin, P.R. China
| | - Xin Jin
- College of Biology and Pharmaceutical Engineering, Jilin Agricultural Science and Technology University, Jilin 132101, Province Jilin, P.R. China
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Wu H, Xia L, Qu Y, Zhao K, Wang C, Wu Y. Synthesis, structure, luminescence and electrochemical and antioxidant properties of anion‐controlled silver(I) complexes with 2,2′‐(1,4‐butanediyl)bis‐1,3‐benzoxazole. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5297] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Huilu Wu
- School of Chemical and Biological EngineeringLanzhou Jiaotong University Lanzhou Gansu 730070 China
| | - Lixian Xia
- School of Chemical and Biological EngineeringLanzhou Jiaotong University Lanzhou Gansu 730070 China
| | - Yao Qu
- School of Chemical and Biological EngineeringLanzhou Jiaotong University Lanzhou Gansu 730070 China
| | - Kun Zhao
- School of Chemical and Biological EngineeringLanzhou Jiaotong University Lanzhou Gansu 730070 China
| | - Cong Wang
- School of Chemical and Biological EngineeringLanzhou Jiaotong University Lanzhou Gansu 730070 China
| | - Yancong Wu
- School of Chemical and Biological EngineeringLanzhou Jiaotong University Lanzhou Gansu 730070 China
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OZAWA Y, MASUNAGA A, KUBO M, YASUDA N, TORIUMI K. Crystal Structure of Hexakis(quinoline-2-thiolatosilver(I)). X-RAY STRUCTURE ANALYSIS ONLINE 2019. [DOI: 10.2116/xraystruct.35.51] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Yoshiki OZAWA
- Graduate School of Material Science, University of Hyogo
| | - Azusa MASUNAGA
- Graduate School of Material Science, University of Hyogo
| | - Masahiro KUBO
- Graduate School of Material Science, University of Hyogo
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Wu H, Qu Y, Wang C, Wu Y, Zhao K. Mononuclear copper(I) and binuclear silver(I) complexes of SPPh3 ligand: Synthesis, crystal structure, properties. PHOSPHORUS SULFUR 2019. [DOI: 10.1080/10426507.2019.1635597] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Huilu Wu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University , Lanzhou , P. R. China
| | - Yao Qu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University , Lanzhou , P. R. China
| | - Cong Wang
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University , Lanzhou , P. R. China
| | - Yancong Wu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University , Lanzhou , P. R. China
| | - Kun Zhao
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University , Lanzhou , P. R. China
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Tang X, Qu Y, Zhao K, Wang C, Wu Y, Mao S, Wu H. Synthesis, crystal structure, fluorescence and antioxidant properties of a binuclear Ag(I) complex based on the SPPh3 ligand. JOURNAL OF CHEMICAL RESEARCH 2019. [DOI: 10.1177/1747519819857503] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The binuclear silver(I) complex [Ag2(η2-SPPh3)2(SPPh3)2](BF4)2 has been synthesized. Crystal analysis shows the coordination sphere around Ag(I) can be described as a three-coordinated slightly distorted planar triangular configuration with both monodentate and monoatomic bidentate bridging coordination modes for the SPPh3 ligand. The fluorescence properties of free SPPh3 and the Ag(I) complex have been studied in the solid state. The Ag(I) complex shows quasi-reversible Ag+/Ag pairs in its electrochemistry and has significant antioxidant activity against hydroxyl radicals.
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Affiliation(s)
- Xia Tang
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
| | - Yao Qu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
| | - Kun Zhao
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
| | - Cong Wang
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
| | - Yancong Wu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
| | - Shanshan Mao
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
| | - Huilu Wu
- School of Chemical and Biological Engineering, Lanzhou Jiaotong University, Lanzhou, P.R. China
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Li XY, Su HF, Xu J. A 2D layer network assembled from an open dendritic silver cluster Cl@Ag 11N 24 and an N-donor ligand. Inorg Chem Front 2019. [DOI: 10.1039/c9qi01100e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A 2D layer network was synthesized from an N-donor ligand and a new silver cluster featuring an open dendritic structure with a high coordination ratio of N atom. Both the assembly process and luminescence properties of this complex was studied.
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Affiliation(s)
- Xiao-Yu Li
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
| | - Hai-Feng Su
- State Key Laboratory for Physical Chemistry of Solid Surfaces and Department of Chemistry
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen 361005
- P. R. China
| | - Jian Xu
- School of Materials Science and Engineering
- National Institute for Advanced Materials
- Tianjin Key Laboratory of Metal and Molecule-Based Material Chemistry
- Nankai University
- Tianjin 300350
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Rare 3-D porous coordination networks based on N, S-mixed coordination showing selective detection of Fe 3+ ion. INORG CHEM COMMUN 2018. [DOI: 10.1016/j.inoche.2018.05.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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