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Refaat M, ElRakaiby MT, El Hariri El Nokab M, Es Sayed J, Elshewy A, Sebakhy KO, Moneib N, Wang T, Smith TJ, Habib MH. Polymerization potential of a bacterial CotA-laccase for β-naphthol: enzyme structure and comprehensive polymer characterization. Front Microbiol 2024; 15:1501112. [PMID: 39640860 PMCID: PMC11619140 DOI: 10.3389/fmicb.2024.1501112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Accepted: 11/04/2024] [Indexed: 12/07/2024] Open
Abstract
Introduction Laccases are blue-multicopper containing enzymes that are known to play a role in the bioconversion of recalcitrant compounds. Their role in free radical polymerization of aromatic compounds for their valorization remains underexplored. In this study, we used a pBAD plasmid containing a previously characterized CotA laccase gene (abbreviated as Bli-Lacc) from Bacillus licheniformis strain ATCC 9945a to express this enzyme and explore its biotransformation/polymerization potential on β-naphthol. Methods The protein was expressed from TOP10 cells of Escherichia coli after successful transformation of the plasmid. Immobilized metal affinity chromatography (IMAC) was used to generate pure protein. The biocatalytic polymerization reaction was optimized based on temperature, pH and starting enzyme concentration. 1H and 13C solution nuclear magnetic resonance (NMR), Fourier transform infrared spectroscopy (FTIR), and solid-state NMR (ssNMR) were used to characterize the formed polymer. A one-gram conversion reaction was done to explore applicability of the reaction in a pilot-scale. Results The polymerization reaction generated a brown precipitate, and its chemical structure was confirmed using 1H and 13C NMR and FTIR. SsNMR revealed the presence of two different orientational hydroxyl functional groups in the polymer in addition to the presence of a very small amount of ether linkages (< 2%). This analysis elucidated that polymerization occurred mainly on the carbons of the aromatic rings, rather than on the carbons attached to the hydroxyl groups, resulting in a condensed ring or polynuclear aromatic structure. The reaction was optimized, and the highest yield was attained under conditions of 37°C, pH 10 and a starting enzyme concentration of 440 nM in 50 mM phosphate buffer. A one-gram conversion yielded 216 mg of polymer as dry mass. The crystal structure of the enzyme was solved at 2.7 Å resolution using X-ray crystallography and presented with a hexagonal space group. The final structure was deposited in the Protein Databank (PDB) with an ID-9BD5. Discussion This article provides a green/enzymatic pathway for the remediation of phenolics and their valorization into potential useful polymeric materials. The comprehensive analysis of the formed polymer provides insight into its structure and functional moieties present. Based on the yield of the one-gram conversion, this synthetic method proves useful for a pilot-scale production level and opens opportunities to invest in using this polymer for industrial/environmental applications.
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Affiliation(s)
- Marina Refaat
- Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt
| | - Marwa T. ElRakaiby
- Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt
| | | | - Julien Es Sayed
- Zernike Institute for Advanced Materials (ZIAM), University of Groningen, Groningen, Netherlands
| | - Ahmed Elshewy
- Department of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Cairo University, Cairo, Egypt
- Department of Natural and Applied Sciences, College of Arts and Sciences, The American University of Iraq-Baghdad (AUIB), Baghdad, Iraq
| | - Khaled O. Sebakhy
- Department of Materials, Textiles and Chemical Engineering, Centre for Polymer and Material Technologies (CPMT), Ghent University, Ghent, Belgium
- Department of Materials, Textiles and Chemical Engineering, Laboratory for Chemical Technology (LCT), Ghent University, Ghent, Belgium
| | - Nayera Moneib
- Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt
| | - Tuo Wang
- Department of Chemistry, Michigan State University, East Lansing, MI, United States
| | - Thomas J. Smith
- Department of Biochemistry and Molecular Biology, University of Texas Medical Branch (UTMB) at Galveston, Galveston, TX, United States
| | - Mohamed H. Habib
- Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, Cairo, Egypt
- Department of Biochemistry and Molecular Biology, University of Texas Medical Branch (UTMB) at Galveston, Galveston, TX, United States
- Department of Internal Medicine, John Sealy School of Medicine, University of Texas Medical Branch at Galveston (UTMB), Galveston, TX, United States
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Tian Z, Wu G, Libby M, Wu K, Jeong KJ, Kim YJ. Synthesis of biologically derived poly(pyrogallol) nanofibers for antibacterial applications. J Mater Chem B 2023; 11:3356-3363. [PMID: 36987970 PMCID: PMC10387265 DOI: 10.1039/d3tb00312d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Abstract
Herein, we present the facile synthesis of poly(pyrogallol) biopolymers and their application as antibacterial agents. Pyrogallol is a class of phenolic compounds that can be found in various plants. Polymerization was performed by the auto-oxidation of pyrogallol under a hydrated condition. The microscopic image of poly(pyrogallol) shows a highly homogenous nanofibrous structure with a diameter of 100.3 ± 16.3 nm. Spectroscopic analysis by FT-IR spectroscopy, Raman spectroscopy, and XPS corroborated the formation of ether (C-O-C) bonds between the hydroxyl group and adjacent carbons of pyrogallol during polymerization. The FT-IR and XPS spectra also revealed redox-active gallol functional groups on poly(pyrogallol) nanofibers, which can be used to release free electrons and protons during oxidation followed by the generation of reactive oxygen species (ROS). The generated ROS from poly(pyrogallol) was used to inhibit the growth of bacteria, Escherichia coli, at a inhibition rates of 56.3 ± 9.7% and 95.5 ± 2.0% within 0.5 and 2 h, respectively. This finding suggests that poly(pyrogallol) can be used as a naturally occurring antibacterial agent for various biomedical and environmental applications.
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Affiliation(s)
- Zhen Tian
- Department of Chemical Engineering, University of New Hampshire, Durham, NH 03824, USA.
| | - Guo Wu
- Department of Chemical Engineering, University of New Hampshire, Durham, NH 03824, USA.
| | - Matt Libby
- Department of Chemical Engineering, University of New Hampshire, Durham, NH 03824, USA.
| | - Kang Wu
- Department of Chemical Engineering, University of New Hampshire, Durham, NH 03824, USA.
| | - Kyung Jae Jeong
- Department of Chemical Engineering, University of New Hampshire, Durham, NH 03824, USA.
| | - Young Jo Kim
- Department of Chemical Engineering, University of New Hampshire, Durham, NH 03824, USA.
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Xie P, Fan L, Huang L, Zhang C. Oxidative polymerization of hydroxytyrosol catalyzed by laccase, tyrosinase or horseradish peroxidase: influencing factors and molecular simulations. J Biomol Struct Dyn 2020; 39:5486-5497. [DOI: 10.1080/07391102.2020.1801512] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Pujun Xie
- Institute of New Technology of Forestry, Chinese Academy of Forestry, Beijing, China
- Institute of Chemical Industry of Forest Products, Chinese Academy of Forestry; National Engineering Laboratory for Biomass Chemical Utilization; Key and Open Laboratory on Forest Chemical Engineering, National Forestry and Grassland Administration, Key Laboratory of Biomass Energy and Material, Nanjing, China
| | - Linlin Fan
- Institute of Agro-product Processing, JAAS, Nanjing, China
| | - Lixin Huang
- Institute of Chemical Industry of Forest Products, Chinese Academy of Forestry; National Engineering Laboratory for Biomass Chemical Utilization; Key and Open Laboratory on Forest Chemical Engineering, National Forestry and Grassland Administration, Key Laboratory of Biomass Energy and Material, Nanjing, China
| | - Caihong Zhang
- Institute of Chemical Industry of Forest Products, Chinese Academy of Forestry; National Engineering Laboratory for Biomass Chemical Utilization; Key and Open Laboratory on Forest Chemical Engineering, National Forestry and Grassland Administration, Key Laboratory of Biomass Energy and Material, Nanjing, China
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Pan HM, Chen S, Jang TS, Han WT, Jung HD, Li Y, Song J. Plant seed-inspired cell protection, dormancy, and growth for large-scale biofabrication. Biofabrication 2019; 11:025008. [PMID: 30708358 DOI: 10.1088/1758-5090/ab03ed] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Biofabrication technologies have endowed us with the capability to fabricate complex biological constructs. However, cytotoxic biofabrication conditions have been a major challenge for their clinical application, leading to a trade-off between cell viability and scalability of biofabricated constructs. Taking inspiration from nature, we proposed a cell protection strategy which mimicks the protected and dormant state of plant seeds in adverse external conditions and their germination in response to appropriate environmental cues. Applying this bioinspired strategy to biofabrication, we successfully preserved cell viability and enhanced the seeding of cell-laden biofabricated constructs via a cytoprotective pyrogallol (PG)-alginate encapsulation system. Our cytoprotective encapsulation technology utilizes PG-triggered sporulation and germination processes to preserve cells, is mechanically robust, chemically resistant, and highly customizable to adequately match cell protectability with cytotoxicity of biofabrication conditions. More importantly, the facile and tunable decapsulation of our PG-alginate system allows for effective germination of dormant cells, under typical culture conditions. With this approach, we have successfully achieved a biofabrication process which is reproducible, scalable, and provided a practical solution for off-the-shelf availability, shipping and temporary storage of fabricated bio-constructs.
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Affiliation(s)
- Houwen Matthew Pan
- School of Chemical and Biomedical Engineering, Nanyang Technological University, 70 Nanyang Drive, 639798, Singapore
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Yalçınkaya Z, Gün S, Şahan T, Birhanlı E, Sahiner N, Aktaş N, Yeşilada Ö. Influence of the medium conditions on enzymatic oxidation of bisphenol A. CAN J CHEM ENG 2013. [DOI: 10.1002/cjce.21920] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Zeki Yalçınkaya
- Faculty of Science, Department of Chemistry; Yuzuncu Yil University; 65080 Campus, Van Turkey
| | - Selim Gün
- Faculty of Science, Department of Chemistry; Yuzuncu Yil University; 65080 Campus, Van Turkey
| | - Tekin Şahan
- Faculty of Engineering and Architecture, Chemical Engineering Department; Yuzuncu Yil University; 65080 Van Turkey
| | - Emre Birhanlı
- Faculty of Science and Art, Department of Biology; Malatya İnönü University; 44280 Malatya Turkey
| | - Nurettin Sahiner
- Faculty of Science and Art, Department of Chemistry; Canakkale Onsekiz Mart University; 17020 Canakkale Turkey
| | - Nahit Aktaş
- Faculty of Engineering and Architecture, Chemical Engineering Department; Yuzuncu Yil University; 65080 Van Turkey
| | - Özfer Yeşilada
- Faculty of Science and Art, Department of Biology; Malatya İnönü University; 44280 Malatya Turkey
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Application of multivariate curve resolution-alternating least squares (MCR-ALS) for resolving pyrogallol autoxidation in weakly alkaline aqueous solutions. OPEN CHEM 2012. [DOI: 10.2478/s11532-012-0125-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
AbstractMultivariate curve resolution — alternating least squares (MCR-ALS) has been applied to data collected from UV/Vis spectrophotometric analysis of the autoxidation process of pyrogallol in weakly alkaline aqueous solutions. The MCR-ALS analysis was able to explain the autoxidation kinetics of pyrogallol at pH 7.4 and 8.0, allowing deduction of the pure spectra and concentration changes of different species present throughout the entire process. The autoxidation process at pH 7.4 was found to follow a first-order reaction model, with formation of purpurogallin as the sole and terminal product. Changing the pH to 8.0 not only accelerated autoxidation of pyrogallol to purpurogallin but also introduced a further autoxidation of purpurogallin. At pH 8.0 the process fits a model of two consecutive first-order reactions. The first step is formation of purpurogallin, which reacts in a further autoxidation to form a yellow colored substance, most probably purpurogallin polymer.
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Zumárraga M, Plou FJ, García-Arellano H, Ballesteros A, Alcalde M. Bioremediation of polycyclic aromatic hydrocarbons by fungal laccases engineered by directed evolution. BIOCATAL BIOTRANSFOR 2009. [DOI: 10.1080/10242420701444272] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Mikolasch A, Schauer F. Fungal laccases as tools for the synthesis of new hybrid molecules and biomaterials. Appl Microbiol Biotechnol 2009; 82:605-24. [DOI: 10.1007/s00253-009-1869-z] [Citation(s) in RCA: 170] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2008] [Revised: 01/09/2009] [Accepted: 01/10/2009] [Indexed: 10/21/2022]
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Kim S, Zille A, Murkovic M, Güebitz G, Cavaco-Paulo A. Enzymatic polymerization on the surface of functionalized cellulose fibers. Enzyme Microb Technol 2007. [DOI: 10.1016/j.enzmictec.2007.01.001] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Kim S, Moldes D, Cavaco-Paulo A. Laccases for enzymatic colouration of unbleached cotton. Enzyme Microb Technol 2007. [DOI: 10.1016/j.enzmictec.2007.01.002] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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