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Pei H, Li H, Hou C, Liu Y, Liu J, Duan M, Yao D, Jiang S, Luo C. Fronto-occipital dyscommunication associates with brain hierarchy in schizophrenia. Commun Biol 2025; 8:699. [PMID: 40325203 PMCID: PMC12052816 DOI: 10.1038/s42003-025-08053-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2024] [Accepted: 04/08/2025] [Indexed: 05/07/2025] Open
Abstract
Schizophrenia involves abnormal fronto-occipital interactions linked to hallucinations and cognitive impairments, but the neural mechanisms remain unclear. This work aims to provide an overview of the relationship between fronto-occipital dysfunction and symptoms using simultaneous EEG-fMRI data in schizophrenia. We measured the brain's functional separation and quantified bidirectional information transfer changes between the frontal and occipital regions. A pronounced elevation in correlation within the frontal lobe, accompanied by a marked reduction in the occipital lobe, was observed between gradient eccentricities and theta-power of forward waves. Moreover, the relationship between forward waves and gradient eccentricities in the ventrolateral prefrontal cortex may be shaped by positive symptoms, while the influence of negative symptoms appears to modulate the relationship between backward waves and gradient eccentricities in the insula. The MOR and CB1 neurotransmitters predominantly contributed to associations between eccentricities and traveling waves. Symptoms promote the dysregulation of hierarchical separation and information transmission in schizophrenia.
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Affiliation(s)
- Haonan Pei
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
| | - Hechun Li
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
| | - Changyue Hou
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
| | - Yayun Liu
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
| | - Jiashuo Liu
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
| | - Mingjun Duan
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- Department of Psychiatry, The Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
| | - Dezhong Yao
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China
- Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, Chengdu, People's Republic of China
| | - Sisi Jiang
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China.
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China.
| | - Cheng Luo
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, People's Republic of China.
- China-Cuba Belt and Road Joint Laboratory on Neurotechnology and Brain-Apparatus Communication, University of Electronic Science and Technology of China, Chengdu, People's Republic of China.
- Research Unit of NeuroInformation, Chinese Academy of Medical Sciences, Chengdu, People's Republic of China.
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A group comparison in fMRI data using a semiparametric model under shape invariance. Comput Stat Data Anal 2022. [DOI: 10.1016/j.csda.2021.107361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Chung J, Jackson BS, Mcdowell JE, Park C. Joint estimation and regularized aggregation of brain network in FMRI data. J Neurosci Methods 2021; 364:109374. [PMID: 34600917 DOI: 10.1016/j.jneumeth.2021.109374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 09/02/2021] [Accepted: 09/28/2021] [Indexed: 11/25/2022]
Abstract
BACKGROUND In the Gaussian graphical model framework, precision matrices reveal conditional dependence structure among random variables. In functional magnetic resonance imaging (fMRI) data, estimating such precision matrices of multi-subjects and aggregating them to a group-level is an essential step for constructing a group brain network. NEW METHOD In this article, we considered joint estimation of multiple precision matrices with regularized aggregation. Also, in the construction of a group precision matrix, we integrated robust aggregation to the estimation. In the estimation of individual precision matrices, we took a regularization approach to induce sparsity, which made brain network estimation more realistic. RESULTS We demonstrated the effectiveness of the proposed method through simulated examples, and analyses on real fMRI data acquired during eye movement tasks assessing cognitive control. For the fMRI data, the joint estimation of multiple precision matrices (JEMP) with regularized aggregation (RA) captured more robust associations between task-relevant neural regions of interest (ROIs), compared to the analyses using JEMP alone. The JEMP with RA also was sensitive to increased neural efficiency after task practice. COMPARISON WITH EXISTING METHOD(S) The simple average of individual precision matrices may be affected by outliers and provide inconsistent outcomes between subject-level and group-level networks. In contrast, the proposed method yielded a robust group graph that could identify and ease the effect of outliers. CONCLUSIONS The proposed method identified regions of practice-induced attenuation associated with reduced cognitive demand after repeat task exposure. Through simulated and real data, we demonstrated that this method does not require any distribution assumption, can identify outliers, and provides robust, representative group brain networks. This method can be applied to datasets that have extensive variability and/or multiple outliers, including applications to specific, and general, cognitive processes, as well as for studies that may require longitudinal data, such as pharmaceutical trials.
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Affiliation(s)
- Jongik Chung
- Department of Statistics and Data Science, University of Central Florida, Orlando, FL 32816, USA
| | - Brooke S Jackson
- Department of Psychology, University of Georgia, Athens, GA 30602, USA
| | | | - Cheolwoo Park
- Department of Mathematical Sciences, KAIST, Daejeon 34141, South Korea.
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Hudgens-Haney ME, Clementz BA, Ivleva EI, Keshavan MS, Pearlson GD, Gershon ES, Keedy SK, Sweeney JA, Gaudoux F, Bunouf P, Canolle B, Tonner F, Gatti-McArthur S, Tamminga CA. Cognitive Impairment and Diminished Neural Responses Constitute a Biomarker Signature of Negative Symptoms in Psychosis. Schizophr Bull 2020; 46:1269-1281. [PMID: 32043133 PMCID: PMC7505197 DOI: 10.1093/schbul/sbaa001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The treatment of negative symptoms (NS) in psychosis represents an urgent unmet medical need given the significant functional impairment it contributes to psychosis syndromes. The lack of progress in treating NS is impacted by the lack of known pathophysiology or associated quantitative biomarkers, which could provide tools for research. This current analysis investigated potential associations between NS and an extensive battery of behavioral and brain-based biomarkers in 932 psychosis probands from the B-SNIP database. The current analyses examined associations between PANSS-defined NS and (1) cognition, (2) pro-/anti-saccades, (3) evoked and resting-state electroencephalography (EEG), (4) resting-state fMRI, and (5) tractography. Canonical correlation analyses yielded symptom-biomarker constructs separately for each biomarker modality. Biomarker modalities were integrated using canonical discriminant analysis to summarize the symptom-biomarker relationships into a "biomarker signature" for NS. Finally, distinct biomarker profiles for 2 NS domains ("diminished expression" vs "avolition/apathy") were computed using step-wise linear regression. NS were associated with cognitive impairment, diminished EEG response amplitudes, deviant resting-state activity, and oculomotor abnormalities. While a connection between NS and poor cognition has been established, association to neurophysiology is novel, suggesting directions for future mechanistic studies. Each biomarker modality was related to NS in distinct and complex ways, giving NS a rich, interconnected fingerprint and suggesting that any one biomarker modality may not adequately capture the full spectrum of symptomology.
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Affiliation(s)
| | - Brett A Clementz
- Departments of Psychology and Neuroscience, Bio-Imaging Research Center, University of Georgia, Athens, GA
| | - Elena I Ivleva
- Department of Psychiatry, University of Texas Southwestern Medical Center, Dallas, TX
| | - Matcheri S Keshavan
- Department of Psychiatry, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA
| | - Godfrey D Pearlson
- Departments of Psychiatry and Neurobiology, Yale University School of Medicine, New Haven, CT
- Institute of Living, Hartford Hospital, Hartford, CT
| | | | - Sarah K Keedy
- Department of Psychiatry, University of Chicago, Chicago, IL
| | - John A Sweeney
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati, Cincinnati, OH
| | | | | | | | | | | | - Carol A Tamminga
- Department of Psychiatry, University of Texas Southwestern Medical Center, Dallas, TX
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Jiang L, Xue C, Dai S, Chen S, Chen P, Sham PC, Wang H, Li M. DESE: estimating driver tissues by selective expression of genes associated with complex diseases or traits. Genome Biol 2019; 20:233. [PMID: 31694669 PMCID: PMC6836538 DOI: 10.1186/s13059-019-1801-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 08/25/2019] [Indexed: 02/08/2023] Open
Abstract
The driver tissues or cell types in which susceptibility genes initiate diseases remain elusive. We develop a unified framework to detect the causal tissues of complex diseases or traits according to selective expression of disease-associated genes in genome-wide association studies (GWASs). This framework consists of three components which run iteratively to produce a converged prioritization list of driver tissues. Additionally, this framework also outputs a list of prioritized genes as a byproduct. We apply the framework to six representative complex diseases or traits with GWAS summary statistics, which leads to the estimation of the lung as an associated tissue of rheumatoid arthritis.
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Affiliation(s)
- Lin Jiang
- Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China.,Department of Pituitary Tumour Center, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China
| | - Chao Xue
- Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China.,Key Laboratory of Tropical Disease Control (SYSU), Ministry of Education, Guangzhou, 510080, China
| | - Sheng Dai
- Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China
| | - Shangzhen Chen
- Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China
| | - Peikai Chen
- Department of Psychiatry, The Centre for Genomic Sciences, State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong SAR, China
| | - Pak Chung Sham
- Department of Psychiatry, The Centre for Genomic Sciences, State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong SAR, China
| | - Haijun Wang
- Department of Pituitary Tumour Center, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China.
| | - Miaoxin Li
- Zhongshan School of Medicine, Center for Precision Medicine, Sun Yat-sen University, Guangzhou, 510080, China. .,Key Laboratory of Tropical Disease Control (SYSU), Ministry of Education, Guangzhou, 510080, China. .,Department of Psychiatry, The Centre for Genomic Sciences, State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong SAR, China.
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