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Espinosa O, Mora L, Sanabria C, Ramos A, Rincón D, Bejarano V, Rodríguez J, Barrera N, Álvarez-Moreno C, Cortés J, Saavedra C, Robayo A, Franco OH. Predictive models for health outcomes due to SARS-CoV-2, including the effect of vaccination: a systematic review. Syst Rev 2024; 13:30. [PMID: 38229123 PMCID: PMC10790449 DOI: 10.1186/s13643-023-02411-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 12/04/2023] [Indexed: 01/18/2024] Open
Abstract
BACKGROUND The interaction between modelers and policymakers is becoming more common due to the increase in computing speed seen in recent decades. The recent pandemic caused by the SARS-CoV-2 virus was no exception. Thus, this study aims to identify and assess epidemiological mathematical models of SARS-CoV-2 applied to real-world data, including immunization for coronavirus 2019 (COVID-19). METHODOLOGY PubMed, JSTOR, medRxiv, LILACS, EconLit, and other databases were searched for studies employing epidemiological mathematical models of SARS-CoV-2 applied to real-world data. We summarized the information qualitatively, and each article included was assessed for bias risk using the Joanna Briggs Institute (JBI) and PROBAST checklist tool. The PROSPERO registration number is CRD42022344542. FINDINGS In total, 5646 articles were retrieved, of which 411 were included. Most of the information was published in 2021. The countries with the highest number of studies were the United States, Canada, China, and the United Kingdom; no studies were found in low-income countries. The SEIR model (susceptible, exposed, infectious, and recovered) was the most frequently used approach, followed by agent-based modeling. Moreover, the most commonly used software were R, Matlab, and Python, with the most recurring health outcomes being death and recovery. According to the JBI assessment, 61.4% of articles were considered to have a low risk of bias. INTERPRETATION The utilization of mathematical models increased following the onset of the SARS-CoV-2 pandemic. Stakeholders have begun to incorporate these analytical tools more extensively into public policy, enabling the construction of various scenarios for public health. This contribution adds value to informed decision-making. Therefore, understanding their advancements, strengths, and limitations is essential.
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Affiliation(s)
- Oscar Espinosa
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS) & Economic Models and Quantitative Methods Research Group, Centro de Investigaciones para el Desarrollo, Universidad Nacional de Colombia, Bogotá, D.C., Colombia.
| | - Laura Mora
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS), Bogotá, Colombia
| | - Cristian Sanabria
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS), Bogotá, Colombia
| | - Antonio Ramos
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS) & Economic Models and Quantitative Methods Research Group, Centro de Investigaciones para el Desarrollo, Universidad Nacional de Colombia, Bogotá, D.C., Colombia
| | - Duván Rincón
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS), Bogotá, Colombia
| | - Valeria Bejarano
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS) & Economic Models and Quantitative Methods Research Group, Centro de Investigaciones para el Desarrollo, Universidad Nacional de Colombia, Bogotá, D.C., Colombia
| | - Jhonathan Rodríguez
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS) & Economic Models and Quantitative Methods Research Group, Centro de Investigaciones para el Desarrollo, Universidad Nacional de Colombia, Bogotá, D.C., Colombia
| | - Nicolás Barrera
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS), Bogotá, Colombia
| | | | - Jorge Cortés
- Faculty of Medicine, Universidad Nacional de Colombia, Bogotá, D.C., Colombia
| | - Carlos Saavedra
- Faculty of Medicine, Universidad Nacional de Colombia, Bogotá, D.C., Colombia
| | - Adriana Robayo
- Directorate of Analytical, Economic and Actuarial Studies in Health, Instituto de Evaluación Tecnológica en Salud (IETS), Bogotá, Colombia
| | - Oscar H Franco
- University Medical Center Utrecht, Utrecht University & Harvard T.H. Chan School of Public Health, Harvard University, Cambridge, USA
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Kifle ZS, Obsu LL. Co-dynamics of COVID-19 and TB with COVID-19 vaccination and exogenous reinfection for TB: An optimal control application. Infect Dis Model 2023; 8:574-602. [PMID: 37287990 PMCID: PMC10229442 DOI: 10.1016/j.idm.2023.05.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 05/06/2023] [Accepted: 05/26/2023] [Indexed: 06/09/2023] Open
Abstract
COVID-19 and Tuberculosis (TB) are among the major global public health problems and diseases with major socioeconomic impacts. The dynamics of these diseases are spread throughout the world with clinical similarities which makes them difficult to be mitigated. In this study, we formulate and analyze a mathematical model containing several epidemiological characteristics of the co-dynamics of COVID-19 and TB. Sufficient conditions are derived for the stability of both COVID-19 and TB sub-models equilibria. Under certain conditions, the TB sub-model could undergo the phenomenon of backward bifurcation whenever its associated reproduction number is less than one. The equilibria of the full TB-COVID-19 model are locally asymptotically stable, but not globally, due to the possible occurrence of backward bifurcation. The incorporation of exogenous reinfection into our model causes effects by allowing the occurrence of backward bifurcation for the basic reproduction number R0 < 1 and the exogenous reinfection rate greater than a threshold (η > η∗). The analytical results show that reducing R0 < 1 may not be sufficient to eliminate the disease from the community. The optimal control strategies were proposed to minimize the disease burden and related costs. The existence of optimal controls and their characterization are established using Pontryagin's Minimum Principle. Moreover, different numerical simulations of the control induced model are carried out to observe the effects of the control strategies. It reveals the usefulness of the optimization strategies in reducing COVID-19 infection and the co-infection of both diseases in the community.
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Affiliation(s)
| | - Legesse Lemecha Obsu
- Department of Mathematics, Adama Science and Technology University, Adama, Ethiopia
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Alshehri A, Ullah S. A numerical study of COVID-19 epidemic model with vaccination and diffusion. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:4643-4672. [PMID: 36896516 DOI: 10.3934/mbe.2023215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The coronavirus infectious disease (or COVID-19) is a severe respiratory illness. Although the infection incidence decreased significantly, still it remains a major panic for human health and the global economy. The spatial movement of the population from one region to another remains one of the major causes of the spread of the infection. In the literature, most of the COVID-19 models have been constructed with only temporal effects. In this paper, a vaccinated spatio-temporal COVID-19 mathematical model is developed to study the impact of vaccines and other interventions on the disease dynamics in a spatially heterogeneous environment. Initially, some of the basic mathematical properties including existence, uniqueness, positivity, and boundedness of the diffusive vaccinated models are analyzed. The model equilibria and the basic reproductive number are presented. Further, based upon the uniform and non-uniform initial conditions, the spatio-temporal COVID-19 mathematical model is solved numerically using finite difference operator-splitting scheme. Furthermore, detailed simulation results are presented in order to visualize the impact of vaccination and other model key parameters with and without diffusion on the pandemic incidence. The obtained results reveal that the suggested intervention with diffusion has a significant impact on the disease dynamics and its control.
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Affiliation(s)
- Ahmed Alshehri
- Department of Mathematics, Faculty of Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Saif Ullah
- Department of Mathematics, University of Peshawar, Khyber Pakhtunkhwa, Pakistan
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Masandawa L, Mirau SS, Mbalawata IS, Paul JN, Kreppel K, Msamba OM. Modeling nosocomial infection of COVID-19 transmission dynamics. RESULTS IN PHYSICS 2022; 37:105503. [PMID: 35469342 PMCID: PMC9021122 DOI: 10.1016/j.rinp.2022.105503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 03/03/2022] [Accepted: 04/08/2022] [Indexed: 06/14/2023]
Abstract
COVID-19 epidemic has posed an unprecedented threat to global public health. The disease has alarmed the healthcare system with the harm of nosocomial infection. Nosocomial spread of COVID-19 has been discovered and reported globally in different healthcare facilities. Asymptomatic patients and super-spreaders are sough to be among of the source of these infections. Thus, this study contributes to the subject by formulating a S E I H R mathematical model to gain the insight into nosocomial infection for COVID-19 transmission dynamics. The role of personal protective equipment θ is studied in the proposed model. Benefiting the next generation matrix method, R 0 was computed. Routh-Hurwitz criterion and stable Metzler matrix theory revealed that COVID-19-free equilibrium point is locally and globally asymptotically stable whenever R 0 < 1 . Lyapunov function depicted that the endemic equilibrium point is globally asymptotically stable when R 0 > 1 . Further, the dynamics behavior of R 0 was explored when varying θ . In the absence of θ , the value of R 0 was 8.4584 which implies the expansion of the disease. When θ is introduced in the model, R 0 was 0.4229, indicating the decrease of the disease in the community. Numerical solutions were simulated by using Runge-Kutta fourth-order method. Global sensitivity analysis is performed to present the most significant parameter. The numerical results illustrated mathematically that personal protective equipment can minimizes nosocomial infections of COVID-19.
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Affiliation(s)
- Lemjini Masandawa
- School of Computational and Communication Science and Engineering, The Nelson Mandela African Institution of Science and Technology, P.O. Box 447, Arusha, Tanzania
| | - Silas Steven Mirau
- School of Computational and Communication Science and Engineering, The Nelson Mandela African Institution of Science and Technology, P.O. Box 447, Arusha, Tanzania
| | - Isambi Sailon Mbalawata
- African Institute for Mathematical Sciences, NEI Globla Secretariat, Rue KG590 ST, Kigali, Rwanda
| | - James Nicodemus Paul
- School of Computational and Communication Science and Engineering, The Nelson Mandela African Institution of Science and Technology, P.O. Box 447, Arusha, Tanzania
| | - Katharina Kreppel
- School of Computational and Communication Science and Engineering, The Nelson Mandela African Institution of Science and Technology, P.O. Box 447, Arusha, Tanzania
| | - Oscar M Msamba
- Arusha Technical College, P.O. Box 296, Arusha, Tanzania
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Atifa A, Khan MA, Iskakova K, Al-Duais FS, Ahmad I. Mathematical modeling and analysis of the SARS-Cov-2 disease with reinfection. Comput Biol Chem 2022; 98:107678. [PMID: 35413580 PMCID: PMC8983602 DOI: 10.1016/j.compbiolchem.2022.107678] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 03/18/2022] [Accepted: 04/01/2022] [Indexed: 11/24/2022]
Abstract
The COVID-19 infection which is still infecting many individuals around the world and at the same time the recovered individuals after the recovery are infecting again. This reinfection of the individuals after the recovery may lead the disease to worse in the population with so many challenges to the health sectors. We study in the present work by formulating a mathematical model for SARS-CoV-2 with reinfection. We first briefly discuss the formulation of the model with the assumptions of reinfection, and then study the related qualitative properties of the model. We show that the reinfection model is stable locally asymptotically when R0<1. For R0≤1, we show that the model is globally asymptotically stable. Further, we consider the available data of coronavirus from Pakistan to estimate the parameters involved in the model. We show that the proposed model shows good fitting to the infected data. We compute the basic reproduction number with the estimated and fitted parameters numerical value is R0≈1.4962. Further, we simulate the model using realistic parameters and present the graphical results. We show that the infection can be minimized if the realistic parameters (that are sensitive to the basic reproduction number) are taken into account. Also, we observe the model prediction for the total infected cases in the future fifth layer of COVID-19 in Pakistan that may begin in the second week of February 2022.
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