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Mahmood A, Akram T, Chen S, Azam S. From Molecules to Devices: Insights into Electronic and Optical Properties of Pyridine-Derived Compounds Using Density Functional Theory Calculations. J Phys Chem A 2024; 128:1049-1062. [PMID: 38323545 DOI: 10.1021/acs.jpca.3c07585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
In this study, we delve into the electronic structure, spectroscopic, and optical properties of five benzo derivatives of pyridine, namely, 5-(4-chlorophenyl)-2-fluoropyridine (1), 2-fluoro-5-(4-fluorophenyl)pyridine (2), 4-(2-fluoropyridin-5-yl)phenol (3), 5-(2,3-dichlorophenyl)-2-fluoropyridine (4), and 5-(5-bromo-2-methoxyphenyl)-2-fluoropyridine (5). Utilizing quantum chemical density functional theory calculations at the B3LYP and Perdew-Burke-Ernzerhof levels of theory combined with the 6-311G(d,p) and 6-311++G(d,p) basis sets, we investigated the electronic and optical characteristics of these compounds. Band structure calculations were conducted for their crystalline structures, revealing a direct band gap varying from 3.018 to 3.558 eV, with the valence band maximum and conduction band minimum located at the G point in the Brillouin zone. The optical properties were analyzed, including the dielectric functions, reflectivity, and refractive index. Notably, reflectivity was found to be minimal in the photon energy range of 0.0-3.0 eV, and the static refractive index, n(0), ranged from 1.55 to 1.70. The research also involved assessing the reactivity of the compounds through calculation of the frontier orbital energy gaps (ΔE), indicating a significant charge transfer and high reactivity. Additionally, we performed frequency analysis to unveil the Fourier-transform infrared spectra of compounds 1-5 at room temperature. Molecular electrostatic potential surfaces of the optimized structures were employed to map the electrophilic and nucleophilic regions of the compounds. This investigation provides a comprehensive understanding of the electronic and optical properties of these pyridine derivatives, shedding light on their potential applications in optoelectronics.
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Affiliation(s)
- Ayyaz Mahmood
- School of Mechanical Engineering, Dongguan University of Technology, Dongguan 523808, China
- School of Life Science and Technology, University of Electronic Science and Technology, Chengdu 610054, China
- School of Art and Design, Guangzhou Panyu Polytechnic, Guangzhou 511483, China
| | - Tayyaba Akram
- Department of Physics, COMSATS Institute of Information Technology, Lahore 54000, Pakistan
| | - Shenggui Chen
- School of Mechanical Engineering, Dongguan University of Technology, Dongguan 523808, China
- School of Art and Design, Guangzhou Panyu Polytechnic, Guangzhou 511483, China
| | - Sikander Azam
- New Technologies─Research Center, University of West Bohemia, Univerzitni 8, 306 14 Pilsen, Czech Republic
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Bhadoria P, Ramanathan V. Combined FTIR/Raman spectroscopic studies and ab initio electronic structure calculations of Dithiothreitol. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 304:123399. [PMID: 37741101 DOI: 10.1016/j.saa.2023.123399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 08/19/2023] [Accepted: 09/10/2023] [Indexed: 09/25/2023]
Abstract
A total of seven minimum energy geometries were obtained on exploring the conformational landscape of dithiothreitol (DTT) by varying the prominent dihedral angles in the molecule through a relaxed scan with a step size of 5° at B3LYP/cc-pVTZ with further geometry optimization at CCSD/cc-pVDZ level of theory. Single point energies were calculated for all the conformers at CCSD(T)/CBS limit with cc-pVNZ (N = T, Q) level of theory and revealed the similar energy pattern. The two conformers, namely G'TG'1 and G'TT, were found iso-energic even though they differed in their structure significantly and were of the lowest energy compared to others. Energies corresponding to the cyclic as well as other configurational counterpart of the global minimum were found much higher in energy compared to the global minimum structure. Intramolecular sulfur centered hydrogen bond was seen to stabilize the global minimum structure of DTT as revealed by AIM, NBO, FMO and ESP charge analysis. Computed NMR of DTT matched well with the experimental data gleaned from the literature. Vibrational spectra (Raman and IR) were measured and compared with computed normal modes of DTT, which were found in good agreement.
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Affiliation(s)
- Poonam Bhadoria
- Department of Chemistry, IIT(BHU), Varanasi 221005, U.P., India
| | - V Ramanathan
- Department of Chemistry, IIT(BHU), Varanasi 221005, U.P., India.
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Bhadoria P, Ramanathan V. Sulfur Centered Hydrogen Bonding in Thioglycolic Acid and Its Clusters: A Computational Exploration. J Phys Chem A 2023; 127:8095-8109. [PMID: 37738172 DOI: 10.1021/acs.jpca.3c04258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/24/2023]
Abstract
The conformational landscape of thioglycolic acid (TGA) was investigated by using the CCSD/cc-pVTZ level of theory. The GGC conformer was identified as the global minimum, followed by the GAC conformer. The calculated rotational constant for the GGC conformer exhibited good agreement with the previously reported experimental results. Subsequently, the study delved into the exploration of sulfur-centered hydrogen bonding in TGA's dimer and trimer clusters, employing the CCSD/cc-pVDZ level of theory. These clusters revealed the participation of both oxygen and sulfur atoms in noncovalent H-bonding, contributing to their stability. The presence of these noncovalent interactions in TGA clusters was elucidated through Atoms in Molecule (AIM), reduced density gradient (RDG), and natural bond order (NBO) analysis, while electrostatic potential (ESP) charge and vibrational mode analysis further supported these findings.
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Affiliation(s)
- Poonam Bhadoria
- Department of Chemistry, Indian Institute of Technology (BHU) Varanasi, Uttar Pradesh 221005, India
| | - Venkatnarayan Ramanathan
- Department of Chemistry, Indian Institute of Technology (BHU) Varanasi, Uttar Pradesh 221005, India
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Bhadoria P, Saroj A, Ramanathan V. To dimerize or not: para-aminothiophenol on a bismuth heterostructure. Phys Chem Chem Phys 2023; 25:9569-9575. [PMID: 36939734 DOI: 10.1039/d2cp05918e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
Abstract
Surface enhanced Raman spectroscopy (SERS) of p-aminothiophenol (PATP) was investigated on β-Bi2O3/Bi2O2CO3 nanoparticles, a novel bismuth based metal substrate with the lowest limit of detection of 1 mM. Unlike on noble metal surfaces where PATP gets converted to p,p'-dimercaptoazobenzene (DMAB) due to photocatalytic coupling, no such transformation of PATP was observed on β-Bi2O3/Bi2O2CO3 nanoparticles. Density functional theory (DFT) calculations at the PW91PW91/LANL2DZ/6-311+G(d,p) level of theory supported the experimental results exceedingly well. Also, the charge transfer direction from PATP to β-Bi2O3/Bi2O2CO3 nanoparticles was revealed by the projected density of states calculation.
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Affiliation(s)
- Poonam Bhadoria
- Department of Chemistry, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, 221005, India.
| | - Arti Saroj
- Department of Chemistry, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, 221005, India.
| | - Venkatnarayan Ramanathan
- Department of Chemistry, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, 221005, India.
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Pandey AK, Singh V, Dwivedi A. Quantum Chemical Analysis and Effect of Super Alkali/Super Halogen Doping on the Opto-Electronic Properties of L-Lysine p-Nitrophenolatemonohydrate (LLPNP) Using First Principle. Polycycl Aromat Compd 2023. [DOI: 10.1080/10406638.2022.2155198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Anoop Kumar Pandey
- Department of Physics, K. S. Saket Post Graduate College, Ram Manohar Lohia University, Ayodhya, India
| | - Vijay Singh
- Department of Physics, University of Dodoma, Tanzania
| | - Apoorva Dwivedi
- Department of Applied Science and Humanities, Seth Vishambhar Nath Institute of Engineering and Technology, Barabanki, India
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Design, synthesis, structural characterization, non-linear optical and computational studies of some 3t-butyl-2r,6c-diarylpiperidin-4-on-1-ium picrates. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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7
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Conformational Landscape and Hydrogen Bonding Pattern of Psilocin: Computational Insights. ChemistrySelect 2023. [DOI: 10.1002/slct.202203994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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8
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Bhadoria P, Ramanathan V. Conformational Landscape and Properties of Psilocybin: A Computational Approach. ChemistrySelect 2022. [DOI: 10.1002/slct.202203026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Poonam Bhadoria
- Department of Chemistry Indian Institute of Technology (BHU) Varanasi Uttar Pradesh 221005 India
| | - Venkatnarayan Ramanathan
- Department of Chemistry Indian Institute of Technology (BHU) Varanasi Uttar Pradesh 221005 India
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Discovery of Potential SARS-CoV-2 Papain-like Protease Natural Inhibitors Employing a Multi-Phase In Silico Approach. Life (Basel) 2022; 12:life12091407. [PMID: 36143445 PMCID: PMC9505301 DOI: 10.3390/life12091407] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 09/01/2022] [Accepted: 09/05/2022] [Indexed: 11/17/2022] Open
Abstract
As an extension of our research against COVID-19, a multiphase in silico approach was applied in the selection of the three most common inhibitors (Glycyrrhizoflavone (76), Arctigenin (94), and Thiangazole (298)) against papain-like protease, PLpro (PDB ID: 4OW0), among 310 metabolites of natural origin. All compounds of the exam set were reported as antivirals. The structural similarity between the examined compound set and S88, the co-crystallized ligand of PLpro, was examined through structural similarity and fingerprint studies. The two experiments pointed to Brevicollin (28), Cryptopleurine (41), Columbamine (46), Palmatine (47), Glycyrrhizoflavone (76), Licochalcone A (87), Arctigenin (94), Termilignan (98), Anolignan B (99), 4,5-dihydroxy-6″-deoxybromotopsentin (192), Dercitin (193), Tryptanthrin (200), 6-Cyano-5-methoxy-12-methylindolo [2, 3A] carbazole (211), Thiangazole (298), and Phenoxan (300). The binding ability against PLpro was screened through molecular docking, disclosing the favorable binding modes of six metabolites. ADMET studies expected molecules 28, 76, 94, 200, and 298 as the most favorable metabolites. Then, molecules 76, 94, and 298 were chosen through in silico toxicity studies. Finally, DFT studies were carried out on glycyrrhizoflavone (76) and indicated a high level of similarity in the molecular orbital analysis. The obtained data can be used in further in vitro and in vivo studies to examine and confirm the inhibitory effect of the filtered metabolites against PLpro and SARS-CoV-2.
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A Multistage In Silico Study of Natural Potential Inhibitors Targeting SARS-CoV-2 Main Protease. Int J Mol Sci 2022; 23:ijms23158407. [PMID: 35955547 PMCID: PMC9369012 DOI: 10.3390/ijms23158407] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 07/25/2022] [Accepted: 07/25/2022] [Indexed: 12/04/2022] Open
Abstract
Among a group of 310 natural antiviral natural metabolites, our team identified three compounds as the most potent natural inhibitors against the SARS-CoV-2 main protease (PDB ID: 5R84), Mpro. The identified compounds are sattazolin and caprolactin A and B. A validated multistage in silico study was conducted using several techniques. First, the molecular structures of the selected metabolites were compared with that of GWS, the co-crystallized ligand of Mpro, in a structural similarity study. The aim of this study was to determine the thirty most similar metabolites (10%) that may bind to the Mpro similar to GWS. Then, molecular docking against Mpro and pharmacophore studies led to the choice of five metabolites that exhibited good binding modes against the Mpro and good fit values against the generated pharmacophore model. Among them, three metabolites were chosen according to ADMET studies. The most promising Mpro inhibitor was determined by toxicity and DFT studies to be caprolactin A (292). Finally, molecular dynamics (MD) simulation studies were performed for caprolactin A to confirm the obtained results and understand the thermodynamic characteristics of the binding. It is hoped that the accomplished results could represent a positive step in the battle against COVID-19 through further in vitro and in vivo studies on the selected compounds.
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11
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Molecular docking, experimental FT-IR spectra, UV–Vis spectra, vibrational analysis, electronic properties, Fukui function analysis of a potential bioactive agent – Proflavine. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100396] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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12
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Alesawy MS, Elkaeed EB, Alsfouk AA, Metwaly AM, Eissa IH. In Silico Screening of Semi-Synthesized Compounds as Potential Inhibitors for SARS-CoV-2 Papain-like Protease: Pharmacophoric Features, Molecular Docking, ADMET, Toxicity and DFT Studies. Molecules 2021; 26:6593. [PMID: 34771004 PMCID: PMC8588135 DOI: 10.3390/molecules26216593] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 10/26/2021] [Accepted: 10/28/2021] [Indexed: 01/21/2023] Open
Abstract
Papain-like protease is an essential enzyme in the proteolytic processing required for the replication of SARS-CoV-2. Accordingly, such an enzyme is an important target for the development of anti-SARS-CoV-2 agents which may reduce the mortality associated with outbreaks of SARS-CoV-2. A set of 69 semi-synthesized molecules that exhibited the structural features of SARS-CoV-2 papain-like protease inhibitors (PLPI) were docked against the coronavirus papain-like protease (PLpro) enzyme (PDB ID: (4OW0). Docking studies showed that derivatives 34 and 58 were better than the co-crystallized ligand while derivatives 17, 28, 31, 40, 41, 43, 47, 54, and 65 exhibited good binding modes and binding free energies. The pharmacokinetic profiling study was conducted according to the four principles of the Lipinski rules and excluded derivative 31. Furthermore, ADMET and toxicity studies showed that derivatives 28, 34, and 47 have the potential to be drugs and have been demonstrated as safe when assessed via seven toxicity models. Finally, comparing the molecular orbital energies and the molecular electrostatic potential maps of 28, 34, and 47 against the co-crystallized ligand in a DFT study indicated that 28 is the most promising candidate to interact with the target receptor (PLpro).
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Affiliation(s)
- Mohamed S. Alesawy
- Pharmaceutical Medicinal Chemistry and Drug Design Department, Faculty of Pharmacy (Boys), Al-Azhar University, Cairo 11884, Egypt;
| | - Eslam B. Elkaeed
- Department of Pharmaceutical Sciences, College of Pharmacy, Almaarefa University, Ad Diriyah, Riyadh 13713, Saudi Arabia;
| | - Aisha A. Alsfouk
- Department of Pharmaceutical Sciences, College of Pharmacy, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Ahmed M. Metwaly
- Pharmacognosy and Medicinal Plants Department, Faculty of Pharmacy (Boys), Al-Azhar University, Cairo 11884, Egypt
- Biopharmaceutical Products Research Department, Genetic Engineering and Biotechnology Research Institute, City of Scientific Research and Technological Applications (SRTA-City), Alexandria 21934, Egypt
| | - Ibrahim H. Eissa
- Pharmaceutical Medicinal Chemistry and Drug Design Department, Faculty of Pharmacy (Boys), Al-Azhar University, Cairo 11884, Egypt;
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13
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Pandey AK, Singh V, Dwivedi A. Comparative study of molecular docking, structural, electronic, vibrational and hydrogen bonding interactions on 4-hydroxy benzo hydrazide (4HBH) and its newly designed derivative [(E)–N′-((1H-Pyrrol-2-YL)methylene) –4-hydroxy benzo hydrazide and its isomers (I, II and III)] (potential inhibitors) for COVID-19 protease. MAIN GROUP CHEMISTRY 2021. [DOI: 10.3233/mgc-210039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Studies have shown that hydrazides and thier derivatives are used for pharmaceutical and medicinal purposes. At present, the whole world is suffering for COVID-19 virus. There are some vaccines or medicines available to treat this disease all over the world. Today the one fourth of the world’s population is under lockdown condition. In this scenario, scientists from the whole world are doing different types of research on this disease. Being a molecular modeller, this inspires us to design new types of species (may be drugs) which may be capable for COVID-19 Protease. In the present effort, we have performed docking studies of title compounds with COVID-19 protein (6LU7) for anti-COVID-19 activity. A comparative quantum chemical calculations of molecular geometries (bond lengths and bond angles) of 4-Hydroxy Benzo Hydrazide (4HBH) and its newly designed derivatve [(E)-N′-((1H-Pyrrol-2-YL)Methylene) –4-Hydroxy Benzo Hydrazide and its isomers (I, II and III)] in the ground state have also been carried out due to its biological importance and compared with the similer type of compound found in literature i.e. benzohydrazide. The optimized geometry and wavenumber of the vibrational bands of the molecules have been calculated by density functional theory (DFT) using Becke’s three-parameters hybrid functional (B3LYP/CAM-B3LYP) with 6–311G (d, p) as the basis set. Vibrational wavenumbers are compared with the observed FT-IR and FTRaman spectra of 4-Hydroxy Benzo Hydrazide. TDDFT calculations are also done on the same level of theory and a theoretical UV-vis spectrum of title molecules are also drawn. HOMO-LUMO analysis has been done to describe the way the molecule interacts with other species. Natural bond orbitals (NBO) analysis has been carried out to inspect the intra- and inter- molecular hydrogen-bonding, conjugative and hyper conjugative interactions and their second order stabilization energy. Nonlinear optical (NLO) analysis has been performed to study the non-linear optical properties of the molecule by computing the first hyperpolarizability. The variation of thermodynamic properties with temperature has been studied. QATIM analysis shows that hydrogen bonding occurs in 4HBH, isomer II and III respectively.
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Affiliation(s)
- Anoop Kumar Pandey
- K. S. Saket Post Graduate College, Ram Manohar Lohia University, Ayodhya, India
| | | | - Apoorva Dwivedi
- Department of Applied Science and Huminities, Seth Vishambhar Nath Institute of Engineering and Technology, Barabanki, India
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Prabakarakrishnan R, Praveen S, Natarajan A, Kandasamy S, Geetha K, Elfasakhany A, Pugazhendhi A. Computational and experimental studies of Metallo organic framework on human epidermal cell line and anticancer potential. ENVIRONMENTAL RESEARCH 2021; 201:111520. [PMID: 34153332 DOI: 10.1016/j.envres.2021.111520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 05/26/2021] [Accepted: 05/31/2021] [Indexed: 06/13/2023]
Abstract
The pentadentate ligand and the precursors were combined to form complexes by green approach. The ligand formation was confirmed by UV-Vis, FT-IR, 1H-NMR, and LC-MS. The optimised stable structure was obtained by molecular simulation studies and the complexes were interpreted by conductivity measurements, UV-Vis, FT-IR, magnetic susceptibility, VSM, and ESR spectral studies. The redox nature of the complexes was investigated by cyclic voltammetry. The cyclic voltammogram shows complexes exhibited single electron transfer from Cu+2/Cu+1. Complexes and penta-dentate ligand were screened for in vitro cytotoxicity by MTT assay method on A431 skin cancer cell line. The ligand structural stability and biological activity were confirmed by theoretical computational studies. The magnetic behaviour showed antiferromagnetic properties at low temperature. The complexes were used as high bar magnets. Similarly, the redox behaviour showed that the complexes could be used in electroplating techniques and sensors. Clinical application revealed that the complexes had effective cytotoxicity. From the data obtained, the complexes were in the form [MLR], where L was the penta-dentate ligand and R = [C6H5COO] & R = [C6H4COO (OH)].
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Affiliation(s)
- R Prabakarakrishnan
- Department of Chemistry, Sri Chandrasekharendra Saraswathi Viswa Mahavidyalaya, Enathur, Kanchipuram, 631 561, Tamil Nadu, India
| | - S Praveen
- PG and Research Department of Chemistry, Muthurangam Govt. Arts College, Otteri, Vellore, 632 002, Tamil Nadu, India
| | - A Natarajan
- Department of Biochemistry, Lakshmi Bangaru Arts and Science College, Melmaruvathur, 603 319, Chengalpattu, Tamil Nadu, India
| | | | - K Geetha
- PG and Research Department of Chemistry, Muthurangam Govt. Arts College, Otteri, Vellore, 632 002, Tamil Nadu, India.
| | - Ashraf Elfasakhany
- Mechanical Engineering Department, College of Engineering, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
| | - Arivalagan Pugazhendhi
- School of Renewable Energy, Maejo University, Chiang Mai, 50290, Thailand; College of Medical and Health Science, Asia University, Taichung, Taiwan.
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Kavipriya R, Kavitha HP, Karthikeyan B, Vennila JP, Rhyman L, Ramasami P. 2,4-Dimorpholino-4-yl-6-(4-nitrophenoxy)-[1,3,5]-triazine: Structural and spectroscopic study using experimental and DFT method. PHYSICAL SCIENCES REVIEWS 2021. [DOI: 10.1515/psr-2019-0003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
2,4-Dimorpholino-4-yl-6-(4-nitrophenoxy)-[1,3,5]-triazine (DMNT) was synthesized and the molecular structure and vibrational frequencies were studied by density functional theory (DFT) method. The functional used was Becke’s three parameter exchange functional combined with the Lee-Yang-Parr correlation (B3LYP) and the standard basis set was 6-31G(d) for all atoms. The Fourier Transform-Infra Red (FT-IR) and FT-Raman spectra of DMNT were recorded and complete assignments of the observed vibrational frequencies are done. The assignments were confirmed by isotopic labelling. The structural parameters, harmonic vibrational frequencies, IR intensities and Raman intensities of DMNT in the ground-state were also computed. Non-linear optical behaviour of DMNT was analysed by examining the properties like electric dipole moment, polarizability and hyperpolarizability. Molecular properties such as ionization potential, electro-negativity, chemical potential and chemical hardness were obtained from molecular orbital analysis. Hyper conjugative interaction and charge delocalization taking place in DMNT was confirmed by Natural bond analysis studies. UV-Vis spectrum of DMNT was also recorded to understand the electronic properties.
Graphical Abstract:
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Affiliation(s)
- R. Kavipriya
- SRM Institute of Science and Technology, Ramapuram campus , Department of Chemistry , 600089 Chennai , India
| | - Helen P. Kavitha
- SRM Institute of Science and Technology, Ramapuram campus , Department of Chemistry , 600089 Chennai , India
| | - B. Karthikeyan
- Department of Chemistry , Annamalai University , Annamalai Nagar , Tamilnadu , India
| | - Jasmine P. Vennila
- Department of Physics , Panimalar Institute of Technology , Chennai , Tamilnadu , India
| | - Lydia Rhyman
- University of Mauritius , Department of Chemistry , Computational Chemistry Group , Faculty of Science , 80832 Réduit , Mauritius
| | - Ponnadurai Ramasami
- University of Mauritius , Department of Chemistry , Computational Chemistry Group , Faculty of Science , 80832 Réduit , Mauritius
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Tripathi MK, Ramanathan V. Conformational stability and structural analysis of methanethiol clusters: a revisit. RSC Adv 2021; 11:29207-29214. [PMID: 35479559 PMCID: PMC9040644 DOI: 10.1039/d1ra04900c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 08/18/2021] [Indexed: 01/12/2023] Open
Abstract
B3LYP/cc-pV(D/T/Q)Z and CCSD/cc-pVDZ levels of theory predict three minima for both dimers and trimers of methanethiol. Predictions at B3LYP/cc-pVDZ corroborates exceedingly well with the earlier reported experimental value but significantly differ from the previous computational predictions. Interaction energy between the molecules decreases with an increase in the size of the basis set for both the dimer and trimer. The dipole moment of methanethiol dimer gets reduced at the B3LYP/cc-pVDZ level of theory relative to all minima configurations, and the same is seen for trimer also. These new predictions are well supported by atoms in molecules (AIM), frontier molecular orbital (FMO), Mulliken charge (MC), and natural bond orbital (NBO) analysis. B3LYP/cc-pV(D/T/Q)Z and CCSD/cc-pVDZ levels of theory predict three minima for both dimers and trimers of methanethiol.![]()
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Affiliation(s)
- Manish Kumar Tripathi
- Department of Chemistry, Indian Institute of Technology (Banaras Hindu University), Varanasi, Uttar Pradesh, India
| | - Venkatnarayan Ramanathan
- Department of Chemistry, Indian Institute of Technology (Banaras Hindu University), Varanasi, Uttar Pradesh, India
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Synthesis, structural, spectroscopical and DFT studies on third order NLO crystal: Ethyl-5‑hydroxy‑4-(2-hydroxyphenyl)-2-oxo-6-(trifluoromethyl) hexahydropyrimidine5-carboxylate (EHOTHPC). J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129017] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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18
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Kavipriya R, Kavitha HP, Vennila JP, Rhyman L, Ramasami P. Spectroscopic and DFT studies of 2,4-dichloro-N-phenethylbenzenesulfonamide. PHYSICAL SCIENCES REVIEWS 2020. [DOI: 10.1515/psr-2019-0002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractThe Fourier-transform infrared spectroscopy (FT-IR) spectrum of 2,4-dichloro-N-phenethylbenzenesulfonamide (DPBS) was obtained and the compound was studied theoretically. The optimized geometry, total electronic energy and vibrational wavenumbers of DPBS were examined using Hartree–Fock (HF) and density functional theory (DFT) method such as B3LYP, BP86 and M06 functionals with the basis set of 6-311++G(d,p) for all atoms. A complete vibrational assignment was studied for DPBS. The molecular orbital energies, polarizability and thermodynamic properties of DPBS were also computed. Analysis of molecular orbitals reveals the parameters such as chemical potential, chemical hardness and electrophilicity index. The molecular properties such as electric dipole moment µ, polarizability α, and hyperpolarizability β reveal the non-linear optical (NLO) property of DPBS. Natural bond analysis study reveals charge delocalization of the molecule. The experimental and computational results are found to have good agreement among themselves. The results of this work will pave the way for further insight in the study of the applications of DPBS.Graphical Abstract:
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Affiliation(s)
- R. Kavipriya
- Department of Chemistry, SRM Institute of Science and Technology, Ramapuram campus, Chennai, Tamilnadu 600089, India
| | - Helen P. Kavitha
- Department of Chemistry, SRM Institute of Science and Technology, Ramapuram campus, Chennai, Tamilnadu 600089, India
| | - Jasmine P. Vennila
- Department of Physics, Panimalar Institute of Technology, 6 Icross street, Bharathi Nagar, Ramapuram, Chennai, Tamilnadu600 089, India
| | - Lydia Rhyman
- Department of Chemical Sciences, University of Johannesburg, Doornfontein, Johannesburg 2028, South Africa
- Department of Chemistry, University of Mauritius, Réduit 80832, Mauritius
| | - Ponnadurai Ramasami
- Department of Chemical Sciences, University of Johannesburg, Doornfontein, Johannesburg 2028, South Africa
- Department of Chemistry, University of Mauritius, Réduit 80832, Mauritius
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19
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Sert Y, Gökce H, Chandra, Mahendra M, Srikantamurthy N, Çırak Ç. Molecular docking and vibrational spectroscopy studies of (E)-N′-hydroxy-1,3-diphenyl-4,5-dihydro-1H-pyrazole-5-carboximidamide. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.02.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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20
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Al-Wahaibi LH, Öztürk N, Hassan HM, Sert Y, El-Emam AA, Al-Tamimi AMS, Gökce H. Experimental (FT-IR, Laser-Raman and NMR) and theoretical comparative study on 2-benzylsulfanyl-4-pentyl-6-(phenylsulfanyl)pyrimidine-5-carbonitrile, a potential bioactive agent. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2018. [DOI: 10.1142/s0219633618500359] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In this paper, the experimental and theoretical vibrational frequencies of a potential bioactive pyrimidine derivative molecule named 2-benzylsulfanyl-4-pentyl-6-(phenylsulfanyl)pyrimidine-5-carbonitrile has been investigated. The experimental FT-IR and Laser-Raman spectra of the studied molecule are in the region (4000–400[Formula: see text]cm[Formula: see text] and (4000–100[Formula: see text]cm[Formula: see text], respectively, in gas phase. The vibrational modes and optimized ideal structure parameters(bond lengths, bond angles and selected dihedral angles) were calculated by using DFT/B3LYP, DFT/BHandHLYP and DFT/PBE1PBE methods with 6-311[Formula: see text]G(d,p) basis set. The theoretical mode assignments have been obtained by using potential energy distribution (PED) with the VEDA4 software program. Additionally, infrared and Raman intensities, the highest occupied molecular orbital (HOMO), the lowest unoccupied molecular orbital (LUMO) energies and their clouds, and other related molecular properties were calculated and evaluated. The proton (1H) and carbon-13 ([Formula: see text]C) nuclear magnetic resonance (NMR) chemical shifts have been investigated for the title molecule, both experimentally (in DMSO-d[Formula: see text] and theoretically (in vacuum and DMSO). The thermodynamic properties of the tile compound have been investigated using the mentioned theoretical computational methods. The results revealed that there isgood agreement between experimental and theoretical results and these results have supported the related literature.
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Affiliation(s)
- Lamya H. Al-Wahaibi
- Department of Chemistry, College of Sciences, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia
| | - Nuri Öztürk
- Dereli Vocational School, Giresun University, 28950 Giresun, Turkey
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, College of Pharmacy, Delta University for Science and Technology, Mansoura, Egypt
| | - Yusuf Sert
- Sorgun Vocational School, Bozok University, 66100 Yozgat, Turkey
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, University of Mansoura, Mansoura 35516, Egypt
| | - Abdul-Malek S. Al-Tamimi
- Department of Pharmaceutical Chemistry, College of Pharmacy, Sattam bin Abdulaziz University, Alkharj 11942, Saudi Arabia
| | - Halil Gökce
- Vocational School of Health Services, Giresun University, 28200 Giresun, Turkey
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21
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Density functional theory analysis and molecular docking evaluation of 1-(2, 5-dichloro-4-sulfophenyl)-3-methyl-5-pyrazolone as COX2 inhibitor against inflammatory diseases. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.03.061] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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22
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Arockia doss M, Rajarajan G, Thanikachalam V, Selvanayagam S, Sridhar B. Synthesis, spectroscopic (UV–Vis, FT-IR and NMR), single crystal XRD of 3,5-diethyl -2,6-di(thiophen-2-yl)piperidin-4-on-1-ium picrate: A comprehensive experimental and computational study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.08.065] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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23
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Arockia Doss M, Savithiri S, Rajarajan G, Thanikachalam V, Anbuselvan C. Synthesis, electronic structure investigation of 3-pentyl-2,6-di(furan-2-yl)piperidin-4-one by FT-IR, FT-Raman and UV-Visible spectral studies and ab initio/DFT calculations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 151:773-784. [PMID: 26172464 DOI: 10.1016/j.saa.2015.07.024] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2014] [Revised: 07/02/2015] [Accepted: 07/03/2015] [Indexed: 06/04/2023]
Abstract
FT-IR and FT-Raman spectra of 3-pentyl-2,6-di(furan-2-yl) piperidin-4-one (3-PFPO) were recorded in the solid phase. The structural and spectroscopic analyses of 3-PFPO were made by using B3LYP/HF level with 6-311++G(d, p) basis set. The fundamental vibrations are assigned on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method and PQS program. Comparison of the observed fundamental vibrational frequencies of 3-PFPO with calculated results by HF and DFT methods indicates that B3LYP is superior to HF method for molecular vibrational problems. The electronic properties such as excitation energies, oscillator strength, wavelengths and HOMO-LUMO energies were obtained by time-dependent DFT (TD-DFT) approach. The polarizability and first order hyperpolarizability of the title molecule were calculated and interpreted. The hyperconjugative interaction energy (E((2))) and electron densities of donor (i) and acceptor (j) bonds were calculated using NBO analysis. In addition, MEP and atomic charges of carbon, nitrogen, oxygen and hydrogen were calculated using B3LYP/6-311++G(d, p) level theory. Moreover, thermodynamic properties (heat capacities, entropy and enthalpy) of the title compound at different temperatures were calculated in gas phase.
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Affiliation(s)
- M Arockia Doss
- Department of chemistry, Annamalai University, Annamalainagar 608 002, India
| | - S Savithiri
- Department of chemistry, Annamalai University, Annamalainagar 608 002, India
| | - G Rajarajan
- Department of chemistry, Annamalai University, Annamalainagar 608 002, India.
| | - V Thanikachalam
- Department of chemistry, Annamalai University, Annamalainagar 608 002, India
| | - C Anbuselvan
- Department of chemistry, Annamalai University, Annamalainagar 608 002, India
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24
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Therasa Alphonsa A, Loganathan C, Athavan Alias Anand S, Kabilan S. FT-IR, FT-Raman, UV, NMR spectra and molecular structure investigation of (E)-2-(3-chloropyrazin-2-yl)-1-(3-ethyl-2, 6-diphenyl piperidin-4-ylidene) hydrazine: A combined experimental and theoretical study. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.07.024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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25
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Arockia doss M, Savithiri S, Rajarajan G, Thanikachalam V, Saleem H. Synthesis, spectroscopic (FT-IR, FT-Raman, UV and NMR) and computational studies on 3t-pentyl-2r,6c-diphenylpiperidin-4-one semicarbazone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 148:189-202. [PMID: 25879989 DOI: 10.1016/j.saa.2015.03.117] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2014] [Revised: 03/11/2015] [Accepted: 03/27/2015] [Indexed: 06/04/2023]
Abstract
The structural and spectroscopic studies of 3t-pentyl-2r,6c-diphenylpiperidin-4-one semicarbazone (PDPOSC) were made by adopting B3LYP/HF levels theory using 6-311++G(d,p) basis set. The FT-IR and Raman spectra were recorded in solid phase, the fundamental vibrations were assigned on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method and PQS program. DFT method indicates that B3LYP is superior to HF method for molecular vibrational analysis. UV-vis spectrum of the compound was recorded in different solvents in the region of 200-800 nm and the electronic properties such as excitation energies, oscillator strength, wavelengths, HOMO and LUMO energies were evaluated by time-dependent DFT (TD-DFT) approach. The polarizability and first order hyperpolarizability of the title molecule were calculated and interpreted. The hyperconjugative interaction energy (E((2))) and electron densities of donor (i) and acceptor (j) bonds were calculated using NBO analysis. In addition, MEP and atomic charges of carbon, nitrogen and oxygen were calculated using B3LYP/6-311++G(d,p) level theory. Moreover, thermodynamic properties of the title compound were calculated by B3LYP/HF, levels using 6-311++G(d,p) basis set. The (1)H and (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by the gauge independent atomic orbital (GIAO) method and compared with experimental results.
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Affiliation(s)
- M Arockia doss
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India
| | - S Savithiri
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India
| | - G Rajarajan
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India.
| | - V Thanikachalam
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India
| | - H Saleem
- Department of Physics, Annamalai University, Annamalainagar 608 002, India
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26
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Sert Y, Mahendra M, Keskinoğlu S, Srikantamurthy N, Umesha KB, Çırak Ç. FT-IR, Laser-Raman spectra and computational analysis of 5-Methyl-3-phenylisoxazole-4-carboxylic acid. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 139:145-155. [PMID: 25554964 DOI: 10.1016/j.saa.2014.12.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2014] [Revised: 10/16/2014] [Accepted: 12/09/2014] [Indexed: 06/04/2023]
Abstract
In this study the experimental and theoretical vibrational frequencies of a newly synthesized anti-tumor, antiviral, hypoglycemic, antifungal and anti-HIV agent namely, 5-Methyl-3-phenylisoxazole-4-carboxylic acid has been investigated. The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) of the molecule in solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths, bond angles and torsion angles) have been calculated by using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr and DFT/M06-2X: highly parametrized, empirical exchange correlation function) with 6-311++G(d,p) basis set by Gaussian 09W software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis by using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data and results in the literature. In addition, the highest occupied molecular orbital (HOMO) energy, the lowest unoccupied molecular orbital (LUMO) energy and the other related molecular energy values of the compound have been investigated by using the same theoretical calculations.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - M Mahendra
- Department of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570006, India
| | - S Keskinoğlu
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - N Srikantamurthy
- Department of Chemistry, Yuvaraja's College, University of Mysore, Mysore 570005, India
| | - K B Umesha
- Department of Chemistry, Yuvaraja's College, University of Mysore, Mysore 570005, India
| | - Ç Çırak
- Department of Physics, Faculty of Art & Sciences, Erzincan University, Erzincan 24100, Turkey
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27
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Suresh M, Syed Ali Padusha M, Govindarasu K, Kavitha E. Synthesis, structural and spectral analysis of 1-(pyrazin-2-yl) piperidin-2-ol by density functional theory. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 138:271-282. [PMID: 25498824 DOI: 10.1016/j.saa.2014.11.063] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Revised: 10/24/2014] [Accepted: 11/20/2014] [Indexed: 06/04/2023]
Abstract
The organic compound 1-(pyrazin-2-yl) piperidin-2-ol (abbreviated as PPOL) has been synthesized and characterized by IR, Raman, (1)H NMR and UV-Vis spectroscopy. The Fourier-transform Raman (3500-50cm(-1)) and infrared spectra (4000-400cm(-1)) were recorded in the solid state and interpreted by comparison with theoretical spectra derived from density functional theory (DFT) calculations. The optimized geometry, frequency and intensity of the vibrational bands of the compound was obtained by the density functional theory using 6-31G(d,p) basis set. In the optimized geometry results shows that geometry parameters are good agreement with XRD values. Stability of the molecule arising from hyper conjugative interactions, charge delocalization has been analyzed using natural bond orbital (NBO) analysis. In calculation of electronic absorption spectra, TD-DFT calculations were carried out in the both gas and solution phases. (1)H NMR chemical shifts were calculated by using the gauge-invariant atomic orbital (GIAO) method. (1)H NMR analysis is evident for O-H⋯O intermolecular interaction of the title molecule. The thermodynamic properties of the title compound have been calculated at different temperatures and the results reveal that the standard heat capacities (Cp,m), standard entropies (Sm) and standard enthalpy changes (Hm) increase with rise in temperature. In addition, HOMO and LUMO energies and the first-order hyperpolarizability have been computed.
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Affiliation(s)
- M Suresh
- PG & Research Department of Chemistry, Jamal Mohamed College, Tiruchirappalli 620 020, India.
| | - M Syed Ali Padusha
- PG & Research Department of Chemistry, Jamal Mohamed College, Tiruchirappalli 620 020, India.
| | - K Govindarasu
- Department of Physics (Engg.), Annamalai University, Annamalainagar 608 002, India
| | - E Kavitha
- Department of Physics (Engg.), Annamalai University, Annamalainagar 608 002, India
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28
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Savithiri S, Arockia doss M, Rajarajan G, Thanikachalam V, Bharanidharan S, Saleem H. Spectroscopic (FT-IR, FT-Raman) and quantum mechanical studies of 3t-pentyl-2r,6c-diphenylpiperidin-4-one thiosemicarbazone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt B:782-792. [PMID: 25448976 DOI: 10.1016/j.saa.2014.09.095] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2014] [Revised: 09/17/2014] [Accepted: 09/22/2014] [Indexed: 06/04/2023]
Abstract
In this study, the molecular structure and vibrational spectra of 3t-pentyl2r,6c-diphenylpiperidin-4-one thiosemicarbazone (PDPOTSC) were studied. The ground-state molecular geometry was ascertained by using the density functional theory (DFT)/B3LYP method using 6-31++G(d,p) as a basis set. The vibrational (FT-IR and FT-Raman) spectra of PDPOTSC were computed using DFT/B3LYP and HF methods with 6-31++G(d,p) basis set. The fundamental vibrations were assigned on the basis of the total energy distribution (TED⩾10%) of the vibrational modes, calculated with scaled quantum mechanics (SQM) methods PQS program. The electrical dipole moment (μ) and first hyperpolarizability (βo) values have been computed using DFT/B3LYP and HF methods. The calculated result (βo) shows that the title molecule might have nonlinear optical (NLO) behavior. Atomic charges of C, N, S and molecular electrostatic potential (MEP) were calculated using B3LYP/6-31G++(d,p). The HOMO-LUMO energies were calculated and natural bonding orbital (NBO) analysis has also been carried out.
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Affiliation(s)
- S Savithiri
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India
| | - M Arockia doss
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India
| | - G Rajarajan
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India.
| | - V Thanikachalam
- Department of Chemistry, Annamalai University, Annamalainagar 608 002, India
| | - S Bharanidharan
- Department of Physics, Annamalai University, Annamalainagar 608 002, India
| | - H Saleem
- Department of Physics, Annamalai University, Annamalainagar 608 002, India
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Sert Y, Puttaraju K, Keskinoğlu S, Shivashankar K, Ucun F. FT-IR and Raman vibrational analysis, B3LYP and M06-2X simulations of 4-bromomethyl-6-tert-butyl-2H-chromen-2-one. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2014.09.043] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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30
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Sert Y, Balakit AA, Öztürk N, Ucun F, El-Hiti GA. Experimental (FT-IR, NMR and UV) and theoretical (M06-2X and DFT) investigation, and frequency estimation analyses on (E)-3-(4-bromo-5-methylthiophen-2-yl)acrylonitrile. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 131:502-511. [PMID: 24840492 DOI: 10.1016/j.saa.2014.04.105] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2014] [Revised: 04/16/2014] [Accepted: 04/22/2014] [Indexed: 06/03/2023]
Abstract
The spectroscopic properties of (E)-3-(4-bromo-5-methylthiophen-2-yl)acrylonitrile have been investigated by FT-IR, UV, (1)H and (13)C NMR techniques. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and angles) have been calculated using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and DFT/M06-2X (the highly parameterized, empirical exchange correlation function) quantum chemical methods with 6-311++G(d,p) basis set by Gaussian 03 software, for the first time. The assignments of the vibrational frequencies have been carried out by potential energy distribution (PED) analysis by using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies were in good agreement with the corresponding experimental data, and with the results in the literature. (1)H and (13)C NMR chemical shifts were calculated by using the gauge-invariant atomic orbital (GIAO) method. The electronic properties, such as excitation energies, oscillator strength wavelengths were performed by B3LYP methods. In addition, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and the other related molecular energy values have been calculated and depicted.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - Asim A Balakit
- Department of Chemistry, College of Science for Women, University of Babylon, Babylon, Iraq; College of Pharmacy, Babylon University, Iraq
| | - Nuri Öztürk
- Department of Physics, Faculty of Art & Sciences, Süleyman Demirel University, Isparta 32100, Turkey
| | - Fatih Ucun
- Department of Physics, Faculty of Art & Sciences, Süleyman Demirel University, Isparta 32100, Turkey
| | - Gamal A El-Hiti
- Department of Optometry, College of Applied Medical Sciences, King Saud University, P.O. Box 10219, Riyadh 11433, Saudi Arabia
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Synthesis, spectral, stereochemical, single crystal XRD and biological studies of 3t-pentyl-2r,6c-diarylpiperidin-4-one picrate derivatives. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.06.096] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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32
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Sert Y, Miroslaw B, Çırak Ç, Doğan H, Szulczyk D, Struga M. Vibrational spectroscopy (FT-IR and Laser-Raman) investigation, and computational (M06-2X and B3LYP) analysis on the structure of 4-(3-fluorophenyl)-1-(propan-2-ylidene)-thiosemicarbazone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:91-99. [PMID: 24662757 DOI: 10.1016/j.saa.2014.02.134] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Revised: 01/31/2014] [Accepted: 02/19/2014] [Indexed: 06/03/2023]
Abstract
In this study, the experimental and theoretical vibrational spectral analysis of 4-(3-fluorophenyl)-1-(propan-2-ylidene)-thiosemicarbazone have been carried out. The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) have been recorded for the solid state samples. The theoretical vibrational frequencies and the optimized geometric parameters (bond lengths and angles) have been calculated for gas phase using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and M06-2X (the highly parametrized, empirical exchange correlation function) quantum chemical methods with 6-311++G(d,p) basis set. The diversity in molecular geometry of fluorophenyl substituted thiosemicarbazones has been discussed based on the X-ray crystal structure reports and theoretical calculation results from the literature. The assignments of the vibrational frequencies have been done on the basis of potential energy distribution (PED) analysis by using VEDA4 software. A good correlation was found between the computed and experimental geometric and vibrational data. In addition, the highest occupied (HOMO) and lowest unoccupied (LUMO) molecular orbital energy levels and other related molecular energy values of the compound have been determined using the same level of theoretical calculations.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - Barbara Miroslaw
- Faculty of Chemistry, Maria Curie-Sklodowska University, pl. M. Curie-Sklodowskiej 3, 20-031 Lublin, Poland
| | - Çağrı Çırak
- Department of Physics, Faculty of Art & Sciences, Erzincan University, Erzincan 24100, Turkey
| | - Hatice Doğan
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - Daniel Szulczyk
- Department of Medical Chemistry, Medical University of Warsaw, 02-007 Warszawa, Poland
| | - Marta Struga
- Department of Pharmacogenomics, Medical University of Warsaw, 02-097 Warszawa, Poland
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33
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Sert Y, Mahendra M, Shivashankar K, Puttaraju KB, Doğan H, Çırak Ç, Ucun F. Vibrational spectroscopy investigation using M06-2X and B3LYP methods analysis on the structure of 2-Trifluoromethyl-10H-benzo[4,5]-imidazo[1,2-a]pyrimidin-4-one. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:109-118. [PMID: 24662759 DOI: 10.1016/j.saa.2014.02.125] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Revised: 02/01/2014] [Accepted: 02/19/2014] [Indexed: 06/03/2023]
Abstract
In this study, the experimental and theoretical vibrational frequencies of a newly synthesized bioactive agent namely, 2-Trifluoromethyl-10H-benzo[4,5]-imidazo[1,2-a]pyrimidin-4-one (TIP) have been investigated. The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) of the molecule in solid phase have been recorded. The theoretical vibrational frequencies and the optimized geometric parameters (bond lengths and bond angles) have been calculated using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and M06-2X (the highly parametrized, empirical exchange correlation function) quantum chemical methods with 6-311++G(d,p) basis set by Gaussian 09W software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data and results in the literature. In addition, the highest occupied molecular orbital (HOMO) energy, the lowest unoccupied molecular orbital (LUMO) energy and the other related molecular energy values of the compound have been investigated using the same theoretical calculations.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - M Mahendra
- Department of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India
| | - K Shivashankar
- P.G. Department of Chemistry, Central College Campus, Bangalore University, Bangalore 560 001, India
| | - K B Puttaraju
- P.G. Department of Chemistry, Central College Campus, Bangalore University, Bangalore 560 001, India
| | - H Doğan
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - Çagrı Çırak
- Department of Physics, Faculty of Art & Sciences, Erzincan University, Erzincan 24100, Turkey
| | - Fatih Ucun
- Department of Physics, Faculty of Art & Sciences, Süleyman Demirel University, Isparta 32100, Turkey
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Sert Y, Doğan H, Navarrete A, Somanathan R, Aguirre G, Çırak Ç. Experimental FT-IR, Laser-Raman and DFT spectroscopic analysis of 2,3,4,5,6-Pentafluoro-trans-cinnamic acid. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:119-126. [PMID: 24662760 DOI: 10.1016/j.saa.2014.02.122] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Revised: 02/04/2014] [Accepted: 02/19/2014] [Indexed: 06/03/2023]
Abstract
In this study, the experimental and theoretical vibrational frequencies of a newly synthesized 2,3,4,5,6-Pentafluoro-trans-cinnamic acid have been investigated. The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) of the molecule in solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and bond angles) have been calculated by using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and DFT/M06-2X (the highly parameterized, empirical exchange correlation function) quantum chemical methods with 6-311++G(d,p) basis set by Gaussian 09W software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis by using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data, and with the results in the literature. In addition, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and the other related molecular energy values have been calculated and depicted.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - Hatice Doğan
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - Angélica Navarrete
- Centro de Graduados e Investigación del Instituto Tecnológico de Tijuana, Apdo. Postal 1166, 22500 Tijuana, B.C., Mexico
| | - Ratnasamy Somanathan
- Centro de Graduados e Investigación del Instituto Tecnológico de Tijuana, Apdo. Postal 1166, 22500 Tijuana, B.C., Mexico
| | - Gerardo Aguirre
- Centro de Graduados e Investigación del Instituto Tecnológico de Tijuana, Apdo. Postal 1166, 22500 Tijuana, B.C., Mexico
| | - Çağrı Çırak
- Department of Physics, Faculty of Art & Sciences, Erzincan University, Erzincan 24100, Turkey
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Sert Y, Singer LM, Findlater M, Doğan H, Çırak Ç. Vibrational frequency analysis, FT-IR, DFT and M06-2X studies on tert-Butyl N-(thiophen-2yl)carbamate. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:46-53. [PMID: 24657467 DOI: 10.1016/j.saa.2014.02.114] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Revised: 01/31/2014] [Accepted: 02/19/2014] [Indexed: 06/03/2023]
Abstract
In this study, the experimental and theoretical vibrational frequencies of a newly synthesized tert-Butyl N-(thiophen-2yl)carbamate have been investigated. The experimental FT-IR (4000-400 cm(-1)) spectrum of the molecule in the solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and bond angles) have been calculated by using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and DFT/M06-2X (the highly parametrized, empirical exchange correlation function) quantum chemical methods with the 6-311++G(d,p) basis set by Gaussian 09W software, for the first time. The vibrational frequencies have been assigned using potential energy distribution (PED) analysis by using VEDA 4 software. The computational optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data, and with related literature results. In addition, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and the other related molecular energy values have been calculated and are depicted.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - L M Singer
- Department of Chemistry & Biochemistry, Texas Tech University, Memorial Circle & Boston, Lubbock, TX 79409, USA
| | - M Findlater
- Department of Chemistry & Biochemistry, Texas Tech University, Memorial Circle & Boston, Lubbock, TX 79409, USA
| | - Hatice Doğan
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - Ç Çırak
- Department of Physics, Faculty of Art & Sciences, Erzincan University, Erzincan 24100, Turkey
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Sert Y, Sreenivasa S, Doğan H, Manojkumar KE, Suchetan PA, Ucun F. FT-IR, Laser-Raman spectra and quantum chemical calculations of methyl 4-(trifluoromethyl)-1H-pyrrole-3-carboxylate-A DFT approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 127:122-130. [PMID: 24632165 DOI: 10.1016/j.saa.2014.02.069] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Revised: 02/07/2014] [Accepted: 02/14/2014] [Indexed: 06/03/2023]
Abstract
In this study the experimental and theoretical vibrational frequencies of a newly synthesized anti-tumor and anti-inflammatory agent namely, methyl 4-(trifluoromethyl)-1H-pyrrole-3-carboxylate have been investigated. The experimental FT-IR (4000-400cm(-1)) and Laser-Raman spectra (4000-100cm(-1)) of the molecule in solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths, bond angles and torsion angles) have been calculated using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr and DFT/M06-2X: highly parameterized, empirical exchange correlation function) with 6-311++G(d,p) basis set by Gaussian 03 software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data and results in the literature. In addition, the highest occupied molecular orbital (HOMO) energy, the lowest unoccupied molecular orbital (LUMO) energy and the other related molecular energy values of the compound have been investigated using the same theoretical calculations.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey; Sorgun Vocational School, Bozok University, Yozgat 66100, Turkey.
| | - S Sreenivasa
- Department of Studies and Research in Chemistry, Tumkur University, Tumkur 572103, Karnataka (State), India
| | - H Doğan
- Department of Physics, Faculty of Art & Sciences, Bozok University, Yozgat 66100, Turkey
| | - K E Manojkumar
- Department of Studies and Research in Chemistry, Tumkur University, Tumkur 572103, Karnataka (State), India
| | - P A Suchetan
- Department of Studies and Research in Chemistry, Tumkur University, Tumkur 572103, Karnataka (State), India
| | - Fatih Ucun
- Department of Physics, Faculty of Art & Sciences, Süleyman Demirel University, Isparta 32100, Turkey
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Velraj G, Soundharam S, Sridevi C. Structure, vibrational, electronic, NBO and NMR analyses of 3-methyl-2,6-diphenylpiperidin-4-one (MDPO) by experimental and theoretical approach. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2013.12.040] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Kunduracıoğlu A, Tamer Ö, Avcı D, Kani I, Atalay Y, Cetinkaya B. 1-Pentamethylbenzyl-3-(n)buthylbenzimidazolesilver(I)bromide complex: synthesis, characterization and DFT calculations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 121:35-45. [PMID: 24220668 DOI: 10.1016/j.saa.2013.10.075] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2013] [Revised: 10/09/2013] [Accepted: 10/17/2013] [Indexed: 06/02/2023]
Abstract
A novel NHC complex of silver(I) ion, 1-pentamethylbenzyl-3-(n)buthylbenzimidazolesilver(I)bromide, was prepared and fully characterized by single crystal X-ray structure determination. FT-IR, NMR and UV-vis spectroscopies were employed to investigate the electronic transition behaviors of the complex. Additionally, the molecular geometry, vibrational frequencies, gauge including atomic orbital (GIAO) (1)H and (13)C chemical shift and electronic transition values of silver(I) complex were calculated by using density functional theory levels (B3LYP and PBE1PBE) with LANL2DZ basis set. Also, the vibrational frequencies were supported on the basis of the potential energy distribution (PED) analysis calculated for PBE1PBE level. We were also investigated total static dipole moment (μ), the mean polarizability (〈α〉), the anisotropy of the polarizability (Δα), the mean first-order hyperpolarizability (〈β〉) of the title complex. Natural bond orbital (NBO) analysis was performed to determine the presence of hyperconjugative interactions, and charge distributions.
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Affiliation(s)
- Ahmet Kunduracıoğlu
- Pamukkale University, Tavas Vocational College, 20225 Tavas, Denizli, Turkey
| | - Ömer Tamer
- Sakarya University, Art and Science Faculty, Department of Physics, 54140 Sakarya, Turkey
| | - Davut Avcı
- Sakarya University, Art and Science Faculty, Department of Physics, 54140 Sakarya, Turkey.
| | - Ibrahim Kani
- Anadolu University, Faculty of Science, Department of Chemistry, 26470 Eskişehir, Turkey
| | - Yusuf Atalay
- Sakarya University, Art and Science Faculty, Department of Physics, 54140 Sakarya, Turkey
| | - Bekir Cetinkaya
- Ege University, Faculty of Science, Department of Chemistry, 35100 Bornova, Izmir, Turkey
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Sert Y, Al-Turkistani AA, Al-Deeb OA, El-Emam AA, Ucun F, Çırak Ç. Experimental FT-IR, Laser-Raman and DFT spectroscopic analysis of a potential chemotherapeutic agent 6-(2-methylpropyl)-4-oxo-2-sulfanylidene-1,2,3,4-tetrahydropyrimidine-5-carbonitrile. SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 120:97-105. [PMID: 24177876 DOI: 10.1016/j.saa.2013.09.138] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2013] [Revised: 09/07/2013] [Accepted: 09/29/2013] [Indexed: 11/27/2022]
Abstract
In this study, the experimental and theoretical vibrational frequencies of a newly synthesized potential chemotherapeutic agent namely, 6-(2-methylpropyl)-4-oxo-2-sulfanylidene-1,2,3,4-tetrahydropyrimidine-5-carbonitrile have been investigated. The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) of the molecule in solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and bond angles) have been calculated by using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and M06-2X (the highly parametrized, empirical exchange correlation function) quantum chemical methods with 6-311++G(d,p) basis set by Gaussian 09 W software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis by using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data, and with the results in the literature. In addition, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and the other related molecular energy values have been calculated and depicted.
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Affiliation(s)
- Yusuf Sert
- Department of Physics, Faculty of Art and Sciences, Bozok University, Yozgat 66100, Turkey.
| | | | - Omar A Al-Deeb
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Ali A El-Emam
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Fatih Ucun
- Department of Physics, Faculty of Art and Sciences, Süleyman Demirel University, Isparta 32100, Turkey
| | - Çağrı Çırak
- Department of Physics, Faculty of Art and Sciences, Erzincan University, Yozgat 24100, Turkey
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Karipcin F, Atis M, Sariboga B, Celik H, Tas M. Structural, spectral, optical and antimicrobial properties of synthesized 1-benzoyl-3-furan-2-ylmethyl-thiourea. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.05.042] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Atiş M, Karipcin F, Sarıboğa B, Taş M, Çelik H. Structural, antimicrobial and computational characterization of 1-benzoyl-3-(5-chloro-2-hydroxyphenyl)thiourea. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 98:290-301. [PMID: 22999164 DOI: 10.1016/j.saa.2012.08.020] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2012] [Revised: 08/03/2012] [Accepted: 08/12/2012] [Indexed: 06/01/2023]
Abstract
A new thiourea derivative, 1-benzoyl-3-(5-chloro-2-hydroxyphenyl)thiourea (bcht) has been synthesized from the reaction of 2-amino-4-chlorophenol with benzoyl isothiocyanate. The title compound has been characterized by elemental analyses, FT-IR, (13)C, (1)H NMR spectroscopy and the single crystal X-ray diffraction analysis. The structure of bcht derived from X-ray diffraction of a single crystal has been presented. The structural and spectroscopic data of the molecule in the ground state were calculated by using density functional method using 6-311++G(d,p) basis set. The complete assignments of all vibrational modes were performed on the basis of the total energy distributions (TED). Isotropic chemical shifts ((13)C NMR and (1)H NMR) were calculated using the gauge-invariant atomic orbital (GIAO) method. Theoretical calculations of bond parameters, harmonic vibration frequencies and nuclear magnetic resonance are in good agreement with experimental results. The UV absorption spectra of the compound that dissolved in ACN and MeOH were recorded. Bcht was also screened for antimicrobial activity against pathogenic bacteria and fungi.
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Affiliation(s)
- Murat Atiş
- Department of Physics, Sciences and Arts Faculty, Nevsehir University, 50300 Nevsehir, Turkey.
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