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Chen Y, Yang Y, Cui J, Zhang H, Zhao Y. Decoding PFAS contamination via Raman spectroscopy: A combined DFT and machine learning investigation. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133260. [PMID: 38128230 DOI: 10.1016/j.jhazmat.2023.133260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 11/30/2023] [Accepted: 12/12/2023] [Indexed: 12/23/2023]
Abstract
In this study, density function theory (DFT) is employed to compute Raman spectra of 40 important Perfluoroalkyl substances (PFASs) as listed in Draft Method 1633 by U.S. Environmental Protection Agent. A systematic comparison of their spectral features is conducted, and Raman peaks and vibrational modes are identified. The Raman spectral regions for the main chemical bonds (such as C-C, CF2 & CF3, O-H) and main functional groups (such as -COOH, -SO3H, -C2H4SO3H, and -SO2NH2) are identified and compared. The impacts of branching location in isomer, molecular chain length, and functional groups on the Raman spectra are analyzed. Particularly, the isomers of PFOA alter the peak locations slightly in wavenumber regions of 200 - 800 and 1000 - 1400 cm-1, while for PFOS, spectral features in the 230 - 360, 470 - 680, and 1030 - 1290 cm-1 regions exhibit significant difference. The carbon chain length can significantly increase the number of Raman peaks, while different functional groups give significantly different peak locations. To facilitate differentiation, a spectral database is constructed by introducing controlled noise into the DFT-computed Raman spectra. Subsequently, two chemometric techniques, principal component analysis (PCA) and t-distributed stochastic neighbor embedding (t-SNE), are applied to effectively distinguish among these spectra, both for 40 PFAS compounds and the isomers. The findings demonstrate the promising potential of combining Raman spectroscopy with advanced spectral analysis methods to discriminate between distinct PFAS compounds, holding significant implications for improved PFAS detection and characterization methodologies.
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Affiliation(s)
- Yangxiu Chen
- College of Physics, Sichuan University, Chengdu, China
| | - Yanjun Yang
- School of Electrical and Computer Engineering, College of Engineering, The University of Georgia, Athens, GA 30602, USA
| | - Jiaheng Cui
- School of Electrical and Computer Engineering, College of Engineering, The University of Georgia, Athens, GA 30602, USA
| | - Hong Zhang
- College of Physics, Sichuan University, Chengdu, China.
| | - Yiping Zhao
- Department of Physics and Astronomy, The University of Georgia, Athens, GA 30602, USA.
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Sánchez-Alvarado AB, Zhou J, Jin P, Neumann O, Senftle TP, Nordlander P, Halas NJ. Combined Surface-Enhanced Raman and Infrared Absorption Spectroscopies for Streamlined Chemical Detection of Polycyclic Aromatic Hydrocarbon-Derived Compounds. ACS NANO 2023; 17:25697-25706. [PMID: 38063501 DOI: 10.1021/acsnano.3c10746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) constitute a class of universally prevalent carcinogenic environmental contaminants. It is increasingly recognized, however, that PAHs derivatized with oxygen, sulfur, or nitrogen functional groups are frequently more dangerous than their unfunctionalized counterparts. This much larger family of chemicals─polycyclic aromatic compounds─PACs─is far less well characterized than PAHs. Using surface-enhanced Raman and IR Absorption spectroscopies (SERS + SEIRA) combined on a single substrate, along with density functional theoretical (DFT) calculations, we show that direct chemical detection and identification of PACs at sub-parts-per-billion concentration can be achieved. Focusing our studies on 9,10-anthraquinone, 5,12-tetracenequinone, 9-nitroanthracene, and 1-nitropyrene as model PAC contaminants, detection is made possible by incorporating a hydroxy-functionalized self-assembled monolayer that facilitates hydrogen bonding between analytes and the SERS + SEIRA substrate. 5,12-Tetracenequinone was detected at 0.3 ppb, and the limit of detection was determined to be 0.1 ppb using SEIRA alone. This approach is straightforwardly extendable to other families of analytes and will ultimately facilitate fieldable chemical detection of these dangerous yet largely overlooked environmental contaminants.
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Affiliation(s)
- Andrés B Sánchez-Alvarado
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
- Laboratory for Nanophotonics, Rice University, Houston, Texas 77005, United States
| | - Jingyi Zhou
- Department of Materials Science and Nanoengineering, Rice University, Houston, Texas 77005, United States
- Laboratory for Nanophotonics, Rice University, Houston, Texas 77005, United States
| | - Peixuan Jin
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| | - Oara Neumann
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas 77005, United States
- Laboratory for Nanophotonics, Rice University, Houston, Texas 77005, United States
| | - Thomas P Senftle
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| | - Peter Nordlander
- Department of Materials Science and Nanoengineering, Rice University, Houston, Texas 77005, United States
- Department of Physics and Astronomy, Rice University, Houston, Texas 77005, United States
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas 77005, United States
- Laboratory for Nanophotonics, Rice University, Houston, Texas 77005, United States
| | - Naomi J Halas
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
- Department of Physics and Astronomy, Rice University, Houston, Texas 77005, United States
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas 77005, United States
- Laboratory for Nanophotonics, Rice University, Houston, Texas 77005, United States
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Spinelli F, d'Agostino S, Taddei P, Jones CD, Steed JW, Grepioni F. Activating [4 + 4] photoreactivity in the solid-state via complexation: from 9-(methylaminomethyl)anthracene to its silver(i) complexes. Dalton Trans 2018; 47:5725-5733. [PMID: 29632941 DOI: 10.1039/c8dt00198g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The [4 + 4] photoreactivity of the anthracene derivative 9-(methylaminomethyl)anthracene (MAMA) has been investigated in solution, gel medium and in the solid state. While quantitative formation of the cyloaddition photoproduct was achieved upon irradiation at λ = 365 nm of ethanol solutions of MAMA, only partial and slow conversion was detected in gels of low molecular weight gelators, and solid-state reactivity was not observed due to the unfavourable relative orientation of the anthracene moieties in the crystal. In hexafluorophosphate, tetrafluoroborate and nitrate silver(i) complexes, however, 9-(methylaminomethyl)anthracene exhibits a more favourable mutual orientation for the aromatic fragments, and [4 + 4] photoreactivity resulted. All compounds were structurally characterized via single crystal and/or X-ray powder diffraction and by Raman spectroscopy; this last technique proved effective in detection of the photoproduct in all solid state complexes.
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Affiliation(s)
- Floriana Spinelli
- Dipartimento di Chimica "Giacomo Ciamician", Università di Bologna, Via Selmi 2, 40126 Bologna, Italy.
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Stanković B, Ostojić BD, Popović A, Gruden MА, Đorđević DS. Theoretical study of nitrodibenzofurans: A possible relationship between molecular properties and mutagenic activity. JOURNAL OF HAZARDOUS MATERIALS 2016; 318:623-630. [PMID: 27475460 DOI: 10.1016/j.jhazmat.2016.07.035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2015] [Revised: 06/17/2016] [Accepted: 07/14/2016] [Indexed: 06/06/2023]
Abstract
In this study we present a theoretical investigation of the molecular properties of nitrodibenzofurans (NDFs) and dinitrodibenzofurans (DNDFs) and their relation to mutagenic activity. Equilibrium geometries, relative energies, vertical ionization potentials (IP), vertical electron activities (EA), electronic dipole polarizabilities, and dipole moments of all NDFs and three DNDFs calculated by Density Functional Theory (DFT) methods are reported. The Ziegler/Rauk Energy Decomposition Analysis (EDA) is employed for a direct estimate of the variations of the orbital interaction and steric repulsion terms corresponding to the nitro group and the oxygen of the central ring of NDFs. The results indicate differences among NDF isomers for the cleavage of the related bonds and steric effects in the active site. The results show a good linear relationship between polarizability (<α>), anisotropy of polarizability (Δα), the summation of IR intensities (ΣIIR) and the summation of Raman activities (ΣARaman) over all 3N-6 vibrational modes and experimental mutagenic activities of NDF isomers in Salmonella typhimurium TA98 strain. The polarizability changes with respect to the νsNO+CN vibrational mode are in correlation with the mutagenic activities of NDFs and suggest that intermolecular interactions are favoured along this coordinate.
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Affiliation(s)
- B Stanković
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11 000 Belgrade, Serbia
| | - B D Ostojić
- Institute for Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia.
| | - A Popović
- Faculty of Chemistry, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
| | - M А Gruden
- Faculty of Chemistry, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
| | - D S Đorđević
- Institute for Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
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Ostojić BD, Đorđević DS. Electronic properties of environmental pollutants and their mutagenic activity: Nitro derivatives of azaphenanthrenes. CHEMOSPHERE 2015; 135:319-324. [PMID: 25974009 DOI: 10.1016/j.chemosphere.2015.04.073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2014] [Revised: 04/22/2015] [Accepted: 04/24/2015] [Indexed: 06/04/2023]
Abstract
The physico-chemical properties of nitroazaphenanthrene isomers: 4-nitro-9-azaphenanthrene (4-N-9-Aph), 5-nitro-9-azaphenanthrene (5-N-9-Aph), 6-nitro-4-azaphenanthrene (6-N-4-Aph), 8-nitro-1-azaphenanthrene (8-N-1-Aph), and 8-nitro-4-azaphenanthrene (8-N-4-Aph) have been investigated theoretically using Density Functional Theory (DFT) calculations. Equilibrium geometries, relative stability, ionization potentials, electron affinities, molecular electrostatic potentials, dipole moments, electric polarizabilities, and vibrational properties of these isomers are presented. Averaged O-N-C-C dihedral angle, dipole moment, polarizability, the summation of IR intensities (∑IIR) and the summation of Raman activities (∑ARaman) over all 3N-6 vibrational degrees of freedom are sensitive to the structure of isomers. A very good linear relationship between ∑ARaman values (R=1.00) and the Salmonella typhimurium strain TA98(-S9) mutagenic activity of the investigated nitroazaphenanthrene isomers (Tokiwa et al., 2003) reveals a very important role of inductive and dispersive forces on the mutagenic pathways of the investigated isomers.
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Affiliation(s)
- Bojana D Ostojić
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia.
| | - Dragana S Đorđević
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
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Ostojić BD, Đorđević DS. Two nitro derivatives of azabenzo[a]pyrene N-oxide: electronic properties and their relation to mutagenic activity. JOURNAL OF HAZARDOUS MATERIALS 2015; 285:94-102. [PMID: 25497021 DOI: 10.1016/j.jhazmat.2014.11.032] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Revised: 10/25/2014] [Accepted: 11/22/2014] [Indexed: 06/04/2023]
Abstract
The equilibrium geometries, relative energies, IR and Raman spectra, vertical ionization potentials (IP), vertical electron affinities (EA), dipole moments (μ), electronic dipole polarizabilities (α), and molecular electrostatic potentials (MEP) of two species that show very high mutagenicity, 1-nitro-6-azabenzo[a]pyrene N-oxide (1-N-6-ABPO) and 3-nitro-6-azabenzo[a]pyrene N-oxide (3-N-6-ABPO), are investigated by means of Density Functional Theory (DFT) using B3LYP functional with different basis sets. The 3-N-6-ABPO isomer was estimated to be much more mutagenic in Salmonella typhimurium tester strain TA98 (396,000 revertants/nmol) than 1-N-6-ABPO (36100 revertants/nmol) (Fukuhara et al., 1992). The results show that for both isomers the structural, energetic, and vibrational properties are similar. The orientation of the nitro group with respect to the plane of the aromatic system as well as the nitroreduction and oxidation reaction and polarizability seem not be important for the determination of different mutagenic behavior of these isomers. However, the dipole moment of 3-N-6-ABPO is about 3 times that of 1-N-6-ABPO. The larger dipole moment and the different electronic charge distribution of 3-N-6-ABPO compared to 1-N-6-ABPO imply stronger electrostatic and inductive molecular interactions so that the active site of the enzyme involved in the mutagenic activation can more effectively bind 3-N-6-ABPO compared to 1-N-6-ABPO.
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Affiliation(s)
- Bojana D Ostojić
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia.
| | - Dragana S Đorđević
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
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Ostojić BD, Stanković B, Ðorđević DS. Theoretical study of the molecular properties of dimethylanthracenes as properties for the prediction of their biodegradation and mutagenicity. CHEMOSPHERE 2014; 111:144-150. [PMID: 24997911 DOI: 10.1016/j.chemosphere.2014.03.067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2014] [Revised: 03/13/2014] [Accepted: 03/18/2014] [Indexed: 06/03/2023]
Abstract
There is little information available on methyl derivatives of anthracene and their interaction with the enzymes of bacterial consortia that could be found in petroleum sludge. In this study a theoretical investigation of all dimethylanthracenes (DMA) isomers and their relation to biodegradation are presented. Equilibrium geometries, ionization potentials (IP), electronic affinities (EA), dipole moments and electronic dipole polarizabilities of DMA isomers calculated by Density Functional Theory (DFT) methods are reported. The calculated IP and EA values vary little along the series of isomers. The polarizability values (〈α〉, Δα, and αyy) increase on passing from meso,meso- and α,meso- to β,β-DMA isomers. The computed polarizability values of DMAs can be used as predictors in determining differences in biodegradation rates of DMAs. The summation over Raman activity ∑ARaman over 3N-6 vibrational modes is sensitive to the position of the methyl substituent. The ∑ARaman values of 1-methylanthracene (MA), 2-MA, 2,9-DMA and 9,10-DMA are consistent with observed mutagenic activities in Salmonella Typhimurium strains TA98 and TA100.
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Affiliation(s)
- Bojana D Ostojić
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia.
| | - Branislav Stanković
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11 000 Belgrade, Serbia
| | - Dragana S Ðorđević
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
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Vougioukalakis GC, Konstantakou M, Pefkianakis EK, Kabanakis AN, Stergiopoulos T, Kontos AG, Andreopoulou AK, Kallitsis JK, Falaras P. A Ruthenium-Based Light-Harvesting Antenna Bearing an Anthracene Moiety in Dye-Sensitized Solar Cells. ASIAN J ORG CHEM 2014. [DOI: 10.1002/ajoc.201402096] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Ostojić BD, Stanković B, Ðorđević DS. The molecular properties of nitrobenzanthrone isomers and their mutagenic activities. CHEMOSPHERE 2014; 104:228-236. [PMID: 24355164 DOI: 10.1016/j.chemosphere.2013.11.057] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2013] [Revised: 11/12/2013] [Accepted: 11/24/2013] [Indexed: 06/03/2023]
Abstract
The mutagenic activity of five mono-substituted nitrobenzanthrones (NBA) has been determined in the Ames assay (Takamura-Enya et al., 2006). In the present study, a theoretical investigation of the electronic properties of all mono-substituted NBA isomers and their relation to mutagenic activity are presented. Equilibrium geometries, vertical ionization potentials (VIP), vertical electron affinities (VEA), relative energies, dipole moments and electronic dipole polarizabilities, and the IR and Raman spectra of NBA isomers calculated by Density Functional Theory (DFT) methods are presented. The position of the nitro group affects the spectral features of the IR and Raman spectra of the NBA isomers. The results show that a good linear relationship exists between the summation of Raman activities (∑ARaman) over all the 3N-6 vibrational modes and the mutagenic activity of the NBA isomers in Salmonella typhimurium strains. The spectroscopic results suggest that the unknown mutagenic activities of 4-NBA, 5-NBA, 6-NBA, 8-NBA and 10-NBA are predicted to follow the order 4-NBA>10-NBA>5-NBA>8-NBA>6-NBA.
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Affiliation(s)
- Bojana D Ostojić
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia.
| | - Branislav Stanković
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11 000 Belgrade, Serbia
| | - Dragana S Ðorđević
- Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Studentski trg 14-16, 11 000 Belgrade, Serbia
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Alparone A, Librando V. Prediction of mutagenic activity of nitrophenanthrene and nitroanthracene isomers by simulated IR and Raman spectra. CHEMOSPHERE 2013; 90:158-163. [PMID: 22809700 DOI: 10.1016/j.chemosphere.2012.06.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Revised: 06/17/2012] [Accepted: 06/19/2012] [Indexed: 06/01/2023]
Abstract
This paper expands upon our original work on nitroanthracenes in (Alparone, A., Librando, V., 2012. Spectrochim. Acta A 89, 129-136) on the series of nitrophenanthrene isomers. Geometries, electric properties, IR and Raman spectra of 1-, 2-, 3-, 4- and 9-nitrophenanthrene (1-NP, 2-NP, 3-NP, 4-NP and 9-NP) were obtained and analyzed using Density Functional Theory calculations. The balance between steric and π-conjugative interactions determines the order of stability 4-NP<1-NP~9-NP<2-NP∼3-NP. IR and Raman spectral zones between 1000 and 1600 cm(-1) show intense bands noticeably affected by the position of the substituent, being potentially useful to discriminate and monitor the investigated isomers. Dipole moments, summations of IR intensity (ΣI(IR)) and Raman activity (ΣA(Raman)) over the 3N-6 vibrational modes are sensitive to the structure, increasing steadily from the non-planar to the planar isomers. Good linear relationships between the ΣI(IR) (r=0.90) and ΣA(Raman) (r=0.99) against the Salmonella typhimurium strain TA98 mutagenic activity of nitrophenanthrenes and isomeric nitroanthracenes are found. On the basis of the structural and vibrational properties, 4-NP seems to have not mutagenic activity, while the unknown TA98 mutagenic potency of 1-nitroanthracene is predicted to be between that of 9-NP and 3-NP. Calculated ΣI(IR) and ΣA(Raman) values could be used as molecular descriptors for QSARs applications of series of isomers.
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Affiliation(s)
- Andrea Alparone
- Research Centre for Analysis, Monitoring and Minimization Methods of Environmental Risk, viale A. Doria 6, Catania 95125, Italy
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