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Arthi P, Dharmasivam M, Kaya B, Rahiman AK. Multi-target activity of copper complexes: Antibacterial, DNA binding, and molecular docking with SARS-CoV-2 receptor. Chem Biol Interact 2023; 373:110349. [PMID: 36639010 PMCID: PMC9831667 DOI: 10.1016/j.cbi.2023.110349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 01/03/2023] [Accepted: 01/09/2023] [Indexed: 01/12/2023]
Abstract
A series of pendant-armed mixed-ligand copper(II) complexes of the type [CuL1-3(diimine)] (1-6) have been synthesized by the reaction of pendant-armed ligands N,N-bis(2-(((E)-2-hydroxy-5-methylbenzylidene)amino)ethyl)benzamide (H2L1), N,N-bis(2-(((E)-2-hydroxy-5-methylbenzylidene)amino)ethyl)-4-nitrobenzamide (H2L2) and N,N-bis(2-(((E)-2-hydroxy-5-methylbenzylidene)amino)ethyl)-3,5-dinitrobenzamide (H2L3) with diimine = 2,2'-bipyridyl (bpy) or 1,10-phenanthroline (phen) in the presence of copper(II) chloride and analyzed using various spectroscopic methods. All the spectroscopic results support that the complexes adopt a pentagonal-bipyramidal shape around the copper ion. Gram-positive and Gram-negative bacteria were used to test all the complexes for antibacterial activity and all the complexes had greater potency against gram-negative pathogens. DNA-binding experiments of complexes with calf thymus DNA revealed a major-groove binding pattern, further supported by molecular docking studies. Complexes have significantly interacted with SARS-CoV-2 receptor via π-π, π-σ, π-alkyl, π-anion, π-cation, alkyl, hydrogen bond, van der Waals, and electrostatic interactions. The estimated binding energy and inhibition constant of these complexes are higher than standard drugs, chloroquine, and molnupiravir.
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Affiliation(s)
- Padmanathan Arthi
- Department of Chemistry, SRM Institute of Science and Technology, Ramapuram, Chennai, 600 089, India
| | - Mahendiran Dharmasivam
- Centre for Cancer Cell Biology and Drug Discovery, Griffith Institute for Drug Discovery, Griffith University, Nathan, Brisbane, Queensland, 4111, Australia
| | - Busra Kaya
- Centre for Cancer Cell Biology and Drug Discovery, Griffith Institute for Drug Discovery, Griffith University, Nathan, Brisbane, Queensland, 4111, Australia; Department of Chemistry, Istanbul University-Cerrahpasa, Avcilar, 34320, Istanbul, Turkey
| | - Aziz Kalilur Rahiman
- Post-Graduate and Research Department of Chemistry, The New College (Autonomous), University of Madras, Chennai, 600 014, India.
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2
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Chaudhary KP, Patel UH, Pandya SB, Socha BN, Padariya TJ, Alalawy MD, Chavda BR, Patel R, Patel NJ, Bhatt BS. Coordination behavior of succinylsulfathiazole – Crystal structure of [Cu(SST).(Pyridine)3.H2O]n, DNA interaction and cytotoxic studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129262] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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3
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Synthesis, characterization, ab initio quantum chemical calculations and molecular docking studies of Se bearing phenoxo-bridged bimetallic Ni(II) complexes. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128771] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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4
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Golbedaghi R, Tabanez AM, Esmaeili S, Fausto R. Biological Applications of Macrocyclic Schiff Base Ligands and Their Metal Complexes: A Survey of the Literature (2005–2019). Appl Organomet Chem 2020. [DOI: 10.1002/aoc.5884] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Reza Golbedaghi
- Chemistry Department Payame Noor University Tehran 19395‐4697 Iran
- University of Coimbra CQC, Department of Chemistry Coimbra P‐3004‐535 Portugal
| | - Andreia M. Tabanez
- University of Coimbra CQC, Department of Chemistry Coimbra P‐3004‐535 Portugal
| | - Somayeh Esmaeili
- Internal Medicine Department Shahid Beheshti University of Medical Sciences Tehran Iran
| | - Rui Fausto
- University of Coimbra CQC, Department of Chemistry Coimbra P‐3004‐535 Portugal
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5
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Rhodium(III) complexes of 1-Alkyl-2-{(o-thioalkyl) phenylazo}imidazoles: synthesis, structure, spectral characterization, DNA binding study and DFT calculation. TRANSIT METAL CHEM 2020. [DOI: 10.1007/s11243-020-00414-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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6
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Pandya SB, Patel UH, Chaudhary KP, Socha BN, Patel NJ, Bhatt BS. DNA interaction, cytotoxicity and molecular structure of cobalt complex of 4‐amino‐N‐(6‐chloropyridazin‐3‐yl)benzene sulfonamide in the presence of secondary ligand pyridine. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5235] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Sachin B. Pandya
- X‐ray Laboratory, Department of PhysicsSardar Patel University Vallabh Vidyanagar 388120 Gujarat India
| | - Urmila H. Patel
- X‐ray Laboratory, Department of PhysicsSardar Patel University Vallabh Vidyanagar 388120 Gujarat India
| | - Kaushik P. Chaudhary
- X‐ray Laboratory, Department of PhysicsSardar Patel University Vallabh Vidyanagar 388120 Gujarat India
| | - Bhavesh N. Socha
- X‐ray Laboratory, Department of PhysicsSardar Patel University Vallabh Vidyanagar 388120 Gujarat India
| | - Nikita J. Patel
- Department of ChemistrySardar Patel University Vallabh Vidyanagar 388120 Gujarat India
| | - Bhupesh S. Bhatt
- Department of ChemistrySardar Patel University Vallabh Vidyanagar 388120 Gujarat India
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7
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Vekariya PA, Karia PS, Bhatt BS, Patel MN. Spectroscopic and electrochemical study for evaluating DNA interaction activity of 4‐(3‐halophenyl)‐6‐(pyridin‐2‐yl)pyrimidin‐2‐amine based piano stool Cp* Rh (III) and Ir (III) complexes. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.5152] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
| | - Parag S. Karia
- Department of ChemistrySardar Patel University Vallabh Vidyanagar 388 120 Gujarat India
| | - Bhupesh S. Bhatt
- Department of ChemistrySardar Patel University Vallabh Vidyanagar 388 120 Gujarat India
| | - Mohan N. Patel
- Department of ChemistrySardar Patel University Vallabh Vidyanagar 388 120 Gujarat India
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Kou YY, Zhao Q, Wang XR, Li ML, Ren XH. Synthesis of three new binuclear Mn complexes: characterization and DNA binding and cleavage properties. J COORD CHEM 2019. [DOI: 10.1080/00958972.2019.1647339] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Ying-Ying Kou
- Key Laboratory of Urban Stormwater System and Water Environment, Beijing University of Civil Engineering and Architecture, Beijing, P. R. China
| | - Qian Zhao
- Key Laboratory of Urban Stormwater System and Water Environment, Beijing University of Civil Engineering and Architecture, Beijing, P. R. China
| | - Xue-Rao Wang
- Key Laboratory of Urban Stormwater System and Water Environment, Beijing University of Civil Engineering and Architecture, Beijing, P. R. China
| | - Mei-Ling Li
- Key Laboratory of Urban Stormwater System and Water Environment, Beijing University of Civil Engineering and Architecture, Beijing, P. R. China
| | - Xiang-Hao Ren
- Key Laboratory of Urban Stormwater System and Water Environment, Beijing University of Civil Engineering and Architecture, Beijing, P. R. China
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Thakor KP, Lunagariya MV, Bhatt BS, Patel MN. Fluorescence and absorption studies of DNA-Pd(II) complex interaction: Synthesis, spectroanalytical investigations and biological activities. LUMINESCENCE 2019; 34:113-124. [DOI: 10.1002/bio.3587] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 11/26/2018] [Accepted: 11/30/2018] [Indexed: 01/17/2023]
Affiliation(s)
- Khyati P. Thakor
- Department of Chemistry; Sardar Patel University; Vallabh Vidyanagar Gujarat India
| | - Miral V. Lunagariya
- Department of Chemistry; Sardar Patel University; Vallabh Vidyanagar Gujarat India
| | - Bhupesh S. Bhatt
- Department of Chemistry; Sardar Patel University; Vallabh Vidyanagar Gujarat India
| | - Mohan N. Patel
- Department of Chemistry; Sardar Patel University; Vallabh Vidyanagar Gujarat India
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Arunadevi A, Paulpandiyan R, Raman N. Probing of effective pyrazolone based metallonucleases: Molecular docking and in vitro
biological critiques. Appl Organomet Chem 2018. [DOI: 10.1002/aoc.4500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Alagarraj Arunadevi
- Research Department of Chemistry; VHNSN College; Virudhunagar -626 001 India
| | | | - Natarajan Raman
- Research Department of Chemistry; VHNSN College; Virudhunagar -626 001 India
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11
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Effect of Substituents on the Biological Activities of Piano Stool η5-Cyclopentadienyl Rh(III) and Ir(III) Complexes. J Inorg Organomet Polym Mater 2018. [DOI: 10.1007/s10904-018-0957-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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12
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Vekariya PA, Karia PS, Bhatt BS, Patel MN. Half Sandwich Rhodium(III) and Iridium(III) Complexes as Cytotoxic and Metallonuclease Agents. Appl Biochem Biotechnol 2018; 187:556-569. [PMID: 30003473 DOI: 10.1007/s12010-018-2835-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Accepted: 07/02/2018] [Indexed: 12/28/2022]
Abstract
Half sandwich complexes of the type [(η5-C5Me5)M(L1-3)Cl]Cl.2H2O were synthesized using [{(η5-C5Me5)M(μ-Cl)Cl}2], where M = Rh(III)/Ir(III) and L1-3 = pyrimidine-based ligands. The complexes were characterized by spectral analysis. DNA interaction studies by absorption titration and hydrodynamic measurement and suggest intercalative mode of binding of complexes with CT-DNA. The molecular docking study also supports intercalation of the complexes between the stacks of nucleotide base pairs. The gel electrophoresis assay demonstrated the ability of the complexes to interact and cleave plasmid DNA. Minimum inhibitory concentrations (MIC) of the complexes were investigated by the microdilution broth method. The cytotoxic properties of the metal complexes were evaluated using brine shrimp lethality bioassay.
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Affiliation(s)
- Pankajkumar A Vekariya
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat, 388120, India
| | - Parag S Karia
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat, 388120, India
| | - Bhupesh S Bhatt
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat, 388120, India
| | - Mohan N Patel
- Department of Chemistry, Sardar Patel University, Vallabh Vidyanagar, Gujarat, 388120, India.
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13
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Theoretical, biological and in silico studies of pendant-armed heteroleptic copper(II) phenolate complexes. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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14
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Arunadevi A, Raman N. Biological contour, molecular docking and antiproliferative studies of DNA targeted histidine based transition metal(II) complexes: Invention and its depiction. Appl Organomet Chem 2018. [DOI: 10.1002/aoc.4250] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
| | - Natarajan Raman
- Research Department of Chemistry; VHNSN College; Virudhunagar 626 001 India
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15
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Novel Bioactive Co(II), Cu(II), Ni(II) and Zn(II) Complexes with Schiff Base Ligand Derived from Histidine and 1,3-Indandione: Synthesis, Structural Elucidation, Biological Investigation and Docking Analysis. J Fluoresc 2016; 27:135-150. [DOI: 10.1007/s10895-016-1941-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Accepted: 09/21/2016] [Indexed: 12/25/2022]
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16
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Packianathan S, Kumaravel G, Raman N. DNA interaction, antimicrobial and molecular docking studies of biologically interesting Schiff base complexes incorporating 4-formyl-N
,N
-dimethylaniline and propylenediamine. Appl Organomet Chem 2016. [DOI: 10.1002/aoc.3577] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Seemon Packianathan
- Research Department of Chemistry; VHNSN College; Virudhunagar 626 001 Tamilnadu India
| | - Ganesan Kumaravel
- Research Department of Chemistry; VHNSN College; Virudhunagar 626 001 Tamilnadu India
| | - Natarajan Raman
- Research Department of Chemistry; VHNSN College; Virudhunagar 626 001 Tamilnadu India
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17
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Vekariya PA, Karia PS, Vaghasiya JV, Soni S, Suresh E, Patel MN. Evolution of rhodium(III) and iridium(III) chelates as metallonucleases. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.01.050] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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18
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Mahendiran D, Kumar RS, Viswanathan V, Velmurugan D, Rahiman AK. Targeting of DNA molecules, BSA/c-Met tyrosine kinase receptors and anti-proliferative activity of bis(terpyridine)copper(ii) complexes. Dalton Trans 2016; 45:7794-814. [DOI: 10.1039/c5dt03831f] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The newly synthesized bis(terpyridine)copper(ii) complexes may act as DNA-targeting metallo-anticancer agents to overcome cisplatin resistance.
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Affiliation(s)
- Dharmasivam Mahendiran
- Post-Graduate and Research Department of Chemistry
- The New College (Autonomous)
- Chennai 600 014
- India
| | - Raju Senthil Kumar
- Department of Pharmaceutical Chemistry
- Swami Vivekanandha College of Pharmacy
- Tiruchengodu 637 205
- India
| | - Vijayan Viswanathan
- CAS in Crystallography and Biophysics
- University of Madras
- Guindy Campus
- Chennai 600 025
- India
| | - Devadasan Velmurugan
- CAS in Crystallography and Biophysics
- University of Madras
- Guindy Campus
- Chennai 600 025
- India
| | - Aziz Kalilur Rahiman
- Post-Graduate and Research Department of Chemistry
- The New College (Autonomous)
- Chennai 600 014
- India
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Arun T, Subramanian R, Raman N. Novel bio-essential metal based complexes linked by heterocyclic ligand: Synthesis, structural elucidation, biological investigation and docking analysis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2015; 154:67-76. [PMID: 26690017 DOI: 10.1016/j.jphotobiol.2015.11.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Revised: 11/06/2015] [Accepted: 11/10/2015] [Indexed: 11/30/2022]
Abstract
New series of bio-essential metal based complexes linked by Schiff base ligand (L) and 2,2'-bipyridine (bpy) have been synthesized and characterized by diverse spectral techniques such as elemental analysis, magnetic susceptibility, molar conductivity measurements, FT-IR, UV-Vis., (1)H NMR, (13)C NMR, EPR and Mass. The spectral data suggest that the metal complexes espouse octahedral geometry around the metal ions. Interactions of the complexes with CT DNA have been explored by electronic absorption, ethidium bromide displacement assay, viscosity measurements, cyclic voltammetry and differential pulse voltammetry in order to evaluate the possible DNA-binding mode and to calculate the corresponding DNA-binding constants. The DNA interaction studies propose that the intercalative mode of interaction and the complexes exhibit oxidative cleavage of pUC19 DNA in the presence of hydrogen peroxide as activator. The synthesized Schiff base ligand and its metal complexes have been screened for anti-microbial activity by micro dilution method against two Gram-positive bacteria (Staphylococcus aureus and Bacillus subtilis), two Gram-negative bacteria (Escherichia coli and Salmonella typhi) and three fungi strains (Fusarium solani, Aspergillus niger and Candida albicans) revealing that the complexes are good anti-pathogenic agents than the ligand. Moreover, molecular docking analysis has been performed to confirm the nature of binding of the complexes with DNA.
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Affiliation(s)
- T Arun
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamilnadu, India
| | - R Subramanian
- Centre for Scientific and Applied Research, PSN College of Engineering and Technology, Tirunelveli 627152, Tamilnadu, India
| | - N Raman
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamilnadu, India.
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Quinoxaline based bio-active mixed ligand transition metal complexes: Synthesis, characterization, electrochemical, antimicrobial, DNA binding, cleavage, antioxidant and molecular docking studies. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2015; 151:100-9. [DOI: 10.1016/j.jphotobiol.2015.07.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2015] [Revised: 07/11/2015] [Accepted: 07/14/2015] [Indexed: 11/18/2022]
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Arun T, Packianathan S, Malarvizhi M, Antony R, Raman N. Bio-relevant complexes of novel N2O2 type heterocyclic ligand: Synthesis, structural elucidation, biological evaluation and docking studies. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2015; 149:93-102. [PMID: 26057019 DOI: 10.1016/j.jphotobiol.2015.05.022] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2015] [Revised: 05/27/2015] [Accepted: 05/28/2015] [Indexed: 01/20/2023]
Abstract
Organic and inorganic entities [Cu(II), Co(II), Ni(II) and Zn(II)] have been bridged by N2O2 type heterocyclic imine (CN) ligand for the synthesis of novel organic-inorganic bridged complexes of the type [M(H2L)]. The synthesized complexes were characterized by spectral techniques such as FT-IR, UV-visible, (1)H NMR, (13)C NMR, EPR, ESI-Mass, elemental analysis, magnetic susceptibility and molar conductivity measurements. The metal complexes adopt square planar geometrical arrangement around the metal ions. DNA binding ability of these complexes has been explored by different techniques viz. electronic absorption, fluorescence, cyclic voltammetry, differential pulse voltammetry and viscosity measurements. These studies prove that CT DNA interaction of the complexes follows intercalation mode. The oxidative cleavage of the complexes with pUC19 DNA has been investigated by gel electrophoresis. Molecular docking calculations have been performed to understand the nature of binding of the complexes with DNA. Moreover, the anti-pathogenic actions of the complexes were tested in vitro against few bacteria and fungi by disk diffusion method. The data reveal that the complexes have higher anti-pathogenic activity than the ligand.
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Affiliation(s)
- T Arun
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamil Nadu, India
| | - S Packianathan
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamil Nadu, India
| | - M Malarvizhi
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamil Nadu, India
| | - R Antony
- Organometallics and Materials Chemistry Lab, IIT-Bombay, Powai, Mumbai 400076, India
| | - N Raman
- Research Department of Chemistry, VHNSN College, Virudhunagar 626 001, Tamil Nadu, India.
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