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Noda I. Enhanced Spectral Resolution and Two-Dimensional Correlation Spectroscopy (2D-COS). APPLIED SPECTROSCOPY 2024:37028231226338. [PMID: 38298019 DOI: 10.1177/00037028231226338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
The apparent enhancement of spectral resolution is one of the attractive features of two-dimensional correlation spectroscopy (2D-COS). Highly overlapped adjacent bands often encountered in one-dimensional spectra may be effectively differentiated and identified by spreading peaks along the second dimension. This differentiating feature or selectivity is especially prominent in asynchronous spectra, where even a slight difference in the variation patterns of overlapped bands in response to a given perturbation results in the generation of cross-peaks. While cross-peaks in asynchronous spectra can identify signals originating from different moieties or bands, they do not effectively specify which regions of spectra actually share the same molecular origin. Overreliance on asynchronous spectra alone risks the potential false negative assessment or lack of sufficient specificity, leading to the failure of classifying signals into a reasonable set of component groups. The combined use of synchronous and asynchronous spectra coupled with the scaling techniques, elimination of anti-correlated negative synchronous peaks, and a robust line shape narrowing method provides a means to achieve both selectivity and specificity for resolution-enhancement of 2D-COS.
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Affiliation(s)
- Isao Noda
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware, USA
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Noda I. Two-Dimensional Correlation Spectroscopy (2D-COS) Analysis of Evolving Hyperspectral Images. APPLIED SPECTROSCOPY 2024:37028231222011. [PMID: 38178788 DOI: 10.1177/00037028231222011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2024]
Abstract
The evolutionary behavior is examined for heterogeneously distributed hyperspectral images of a simulated biological tissue sample comprising lipid-like and protein-like components during the aging process. Taking a simple planar average of a spectral image loses useful information about the spatially resolved nature of the data. In contrast, multivariate curve resolution (MCR) analysis of a spectral image at a given stage of aging produces a set of loadings of major component groups. Each loading represents the combined spectral contributions of a mixture of similar but not identical constituents (i.e., lipid-like and protein-like components). Temporal analysis of individual component groups using two-dimensional correlation spectroscopy (2D-COS) and MCR provides much-streamlined results without interferences from the overlapped contributions. Grouping of data into separate components also allows for the effective comparison of the parallel processes of lipid oxidation and protein denaturation involving a number of constituents using the heterocomponent 2D-COS analysis. The complex interplays of lipid constituents and protein secondary structures during the tissue aging process are unambiguously highlighted. The possibility of extending this approach to a much more general form of applications using a moving window analysis is also discussed.
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Affiliation(s)
- Isao Noda
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware, USA
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Karthikeyan S, Vazquez-Zapien GJ, Martinez-Cuazitl A, Delgado-Macuil RJ, Rivera-Alatorre DE, Garibay-Gonzalez F, Delgado-Gonzalez J, Valencia-Trujillo D, Guerrero-Ruiz M, Atriano-Colorado C, Lopez-Reyes A, Lopez-Mezquita DJ, Mata-Miranda MM. Two-trace two-dimensional correlation spectra (2T2D-COS) analysis using FTIR spectra to monitor the immune response by COVID-19. J Mol Med (Berl) 2024; 102:53-67. [PMID: 37947852 DOI: 10.1007/s00109-023-02390-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 09/22/2023] [Accepted: 10/20/2023] [Indexed: 11/12/2023]
Abstract
There is a growing trend in using saliva for SARS-CoV-2 detection with reasonable accuracy. We have studied the responses of IgA, IgG, and IgM in human saliva by directly comparing disease with control analyzing two-trace two-dimensional correlation spectra (2T2D-COS) employing Fourier transform infrared (FTIR) spectra. It explores the molecular-level variation between control and COVID-19 saliva samples. The advantage of 2T2D spectra is that it helps in discriminating remarkably subtle features between two simple pairs of spectra. It gives spectral information from highly overlapped bands associated with different systems. The clinical findings from 2T2D show the decrease of IgG and IgM salivary antibodies in the 50, 60, 65, and 75-years COVID-19 samples. Among the various COVID-19 populations studied the female 30-years group reveals defense mechanisms exhibited by IgM and IgA. Lipids and fatty acids decrease, resulting in lipid oxidation due to the SARS-CoV-2 in the samples studied. Study shows salivary thiocyanate plays defense against SARS-CoV-2 in the male population in 25 and 35 age groups. The receiver operation characteristics statistical method shows a sensitivity of 98% and a specificity of 94% for the samples studied. The measure of accuracy computed as F score and G score has a high value, supporting our study's validation. Thus, 2T2D-COS analysis can potentially monitor the progression of immunoglobulin's response function to COVID-19 with reasonable accuracy, which could help diagnose clinical trials. KEY MESSAGES: The molecular profile of salivary antibodies is well resolved and identified from 2T2D-COS FTIR spectra. The IgG antibody plays a significant role in the defense mechanism against SARS-CoV-2 in 25-40 years. 2T2D-COS reveals the absence of salivary thiocyanate in the 40-75 years COVID-19 population. The receiver operation characteristic (ROC) analysis validates our study with high sensitivity and specificity.
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Affiliation(s)
- Sivakumaran Karthikeyan
- Department of Physics, Dr. Ambedkar Government Arts College, Chennai, Tamil Nadu, 600039, India.
| | - Gustavo J Vazquez-Zapien
- Centro de Investigación y Desarrollo del Ejército y Fuerza Aérea Mexicanos, Secretaría de la Defensa Nacional, Mexico City, 11400, Mexico.
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico.
| | - Adriana Martinez-Cuazitl
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico
- Escuela Nacional de Medicina y Homeopatía, Instituto Politécnico Nacional, Mexico City, 07320, Mexico
| | - Raul J Delgado-Macuil
- Centro de Investigación en Biotecnología Aplicada, Instituto Politécnico Nacional, Tlaxcala, 90700, Mexico
| | - Daniel E Rivera-Alatorre
- Centro de Investigación y Desarrollo del Ejército y Fuerza Aérea Mexicanos, Secretaría de la Defensa Nacional, Mexico City, 11400, Mexico
| | - Francisco Garibay-Gonzalez
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico
| | - Josemaria Delgado-Gonzalez
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico
| | - Daniel Valencia-Trujillo
- Servicio de Microbiología Clínica, Instituto Nacional de Enfermedades Respiratorias, Mexico City, 14080, Mexico
| | - Melissa Guerrero-Ruiz
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico
| | - Consuelo Atriano-Colorado
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico
| | - Alberto Lopez-Reyes
- Laboratorio de Gerociencias, Instituto Nacional de Rehabilitación Luis Guillermo Ibarra Ibarra, Secretaría de Salud, Mexico City, 14389, Mexico
| | | | - Monica M Mata-Miranda
- Escuela Militar de Medicina, Centro Militar de Ciencias de la Salud, Secretaría de la Defensa Nacional, Mexico City, 11200, Mexico.
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Hniopek J, Meurer J, Zechel S, Schmitt M, Hager MD, Popp J. Molecular in situ monitoring of the pH-triggered response in adaptive polymers by two-dimensional Raman micro-correlation-spectroscopy. Chem Sci 2023; 14:7248-7255. [PMID: 37416726 PMCID: PMC10321532 DOI: 10.1039/d3sc01455j] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 06/02/2023] [Indexed: 07/08/2023] Open
Abstract
Stimuli-responsive polymers can switch specific physical properties in response to a change of the environmental conditions. This behavior offers unique advantages in applications where adaptive materials are needed. To tune the properties of stimuli-responsive polymers, a detailed understanding of the relationship between the applied stimulus and changes in molecular structure as well as the relationship between the latter and macroscopic properties is required, which until now has required laborious methods. Here, we present a straightforward way to investigate the progressing trigger, the change of the chemical composition of the polymer and the macroscopic properties simultaneously. Thereby, the response behavior of the reversible polymer is studied in situ with molecular sensitivity and spatial as well as temporal resolution utilizing Raman micro-spectroscopy. Combined with two-dimensional correlation analysis (2DCOS), this method reveals the stimuli-response on a molecular level and determines the sequence of changes and the diffusion rate inside the polymer. Due to the label-free and non-invasive approach, it is furthermore possible to combine this method with the investigation of macroscopic properties revealing the response of the polymer to the external stimulus on both the molecular and the macroscopic level.
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Affiliation(s)
- Julian Hniopek
- Department Spectroscopy & Imaging, Leibniz Institute of Photonic Technology Albert-Einstein-Str. 9 0775 Jena Germany
- Institute of Physical Chemistry (IPC), Friedrich Schiller University Jena Helmholtzweg 4 07743 Jena Germany
- Abbe Center of Photonics, Friedrich Schiller University Jena Albert-Einstein-Str. 6 07745 Jena Germany
| | - Josefine Meurer
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena Humboldtstr. 10 07743 Jena Germany
- Jena Center of Soft Matter (JCSM), Friedrich Schiller University Jena Philosophenweg 7 07743 Jena Germany
| | - Stefan Zechel
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena Humboldtstr. 10 07743 Jena Germany
- Jena Center of Soft Matter (JCSM), Friedrich Schiller University Jena Philosophenweg 7 07743 Jena Germany
| | - Michael Schmitt
- Institute of Physical Chemistry (IPC), Friedrich Schiller University Jena Helmholtzweg 4 07743 Jena Germany
- Abbe Center of Photonics, Friedrich Schiller University Jena Albert-Einstein-Str. 6 07745 Jena Germany
| | - Martin D Hager
- Laboratory of Organic and Macromolecular Chemistry (IOMC), Friedrich Schiller University Jena Humboldtstr. 10 07743 Jena Germany
- Jena Center of Soft Matter (JCSM), Friedrich Schiller University Jena Philosophenweg 7 07743 Jena Germany
| | - Jürgen Popp
- Department Spectroscopy & Imaging, Leibniz Institute of Photonic Technology Albert-Einstein-Str. 9 0775 Jena Germany
- Institute of Physical Chemistry (IPC), Friedrich Schiller University Jena Helmholtzweg 4 07743 Jena Germany
- Abbe Center of Photonics, Friedrich Schiller University Jena Albert-Einstein-Str. 6 07745 Jena Germany
- Jena Center of Soft Matter (JCSM), Friedrich Schiller University Jena Philosophenweg 7 07743 Jena Germany
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Al-Mokhalelati K, Karabet F, Allaf AW, Naddaf M, Al Lafi AG. Spectroscopic investigations to reveal synergy between polystyrene waste and paraffin wax in super-hydrophobic sand. Sci Rep 2023; 13:9810. [PMID: 37330582 DOI: 10.1038/s41598-023-36987-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 06/14/2023] [Indexed: 06/19/2023] Open
Abstract
Sand based superhydrophobic materials, such as paraffin-coated sand, are the focus of global research to fight land desertification. The present work investigates the development of paraffin-coated sand with extending service life as well as improving and stabilizing hydrophobic property by adding plastic waste. While the addition of polyethylene (PE) did not improve the hydrophobic property of paraffin coated sand, incorporating 4.5% of polystyrene (PS) in the composition of coated sand increased the contact angle. Fourier Transform Infrared spectroscopy (FTIR), X-ray diffraction patterns (XRD) and two-dimensional correlation spectroscopy (2D-COS) indicated that PS increased the molecular orientation of sand and reduced the thickness of the paraffin coating. Paraffin on the other hand improved the distribution of PS and prevented aggregation with sand. Both FTIR bands at 1085 cm-1 and 462 cm-1 were more sensitive to change in PS contents, while other bands at 780 cm-1 and 798 cm-1 were more sensitive to change in paraffin contents. Moreover, the XRD patterns of sand were split into two components by the addition of PS indicating the transformation of morphology to less ordered or more distorted form. 2D-COS is a powerful tool to reveal harmony of components in mixtures, extract information related to the role of each of them, and help in decision-making process regarding choosing the appropriate recipes.
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Affiliation(s)
- K Al-Mokhalelati
- Department of Chemistry, Faculty of Science, Damascus University, Damascus, Syrian Arab Republic.
| | - F Karabet
- Department of Chemistry, Faculty of Science, Damascus University, Damascus, Syrian Arab Republic
| | - A W Allaf
- Department of Chemistry, Atomic Energy Commission, P.O. Box 6091, Damascus, Syrian Arab Republic
| | - M Naddaf
- Department of Chemistry, Atomic Energy Commission, P.O. Box 6091, Damascus, Syrian Arab Republic
| | - A G Al Lafi
- Department of Chemistry, Atomic Energy Commission, P.O. Box 6091, Damascus, Syrian Arab Republic
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Influence of Natural Aging on the Moisture Sorption Behaviour of Wooden Structural Components. Molecules 2023; 28:molecules28041946. [PMID: 36838933 PMCID: PMC9960851 DOI: 10.3390/molecules28041946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Revised: 02/10/2023] [Accepted: 02/14/2023] [Indexed: 02/22/2023] Open
Abstract
A greater understanding of moisture sorption behaviour of aged wooden structural components, which has a close relationship with dimensional stability, is required to effectively evaluate and preserve historical artefacts. This study focused on the effects of aging on Baotou beam samples from a Chinese historical wooden building. An analysis of the sorption isotherms and hysteresis loops of a naturally aged, decayed sample (AOS), an aged sound sample (AIS), and a reference sample (RS), using classical sorption isotherm models revealed that the moisture sorption behaviour of samples from the same growth ring in a Baotou beam can differ significantly. AOS showed higher hygroscopicity than AIS, and both these samples were more hygroscopic than RS. Furthermore, the mono/multilayer moisture contents of AOS were always higher than those of AIS and RS. In addition, Fourier transform infrared, second-derivative infrared, and two-dimensional correlation infrared spectroscopy were used to investigate chemical changes in the samples. The relative hemicellulose and lignin contents of the samples changed significantly with wood aging. Furthermore, AOS exhibited the highest calcium oxalate content, which may be associated with fungal infections. Overall, these results provide valuable insights into the effects of aging on wood samples and the dimensional stability of timber structures, which could inform future research on methods for the preservation or restoration of aging timber structures.
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