Methane production from acetate, formate and H2/CO2 under high ammonia level: Modified ADM1 simulation and microbial characterization

Enhanced anaerobic digestion model no.1 for high solids fermentation: Integrating homoacetogenesis and chain elongation

The production of volatile fatty acids (VFA) through high-solids anaerobic fermentation of organic waste offers a promising route for resource recovery. This study used a batch-mode anaerobic leach bed reactor (LBR) with leachate circulation to ferment the organic fraction of municipal solid waste, producing high concentrations of butyric acid, along with notable amounts of lactic and caproic acids. These results provide valuable insights and underscore the need for process optimization within conventional fermentation systems. To better model the LBR's complex dynamics, the Anaerobic Digestion Model No.1 (ADM1) was modified and extended to account for slow hydrolysis in dry fermentation conditions, thermodynamic constraints imposed by Gibbs Free Energy and hydrogen partial pressures, as well as lactic acid production and chain elongation pathways including homoacetogenesis and caproic acid formation. These enhancements provided deeper insights into high-solids anaerobic fermentation, advancing strategies for improved process control and system optimization.

Modifications to the anaerobic digestion model no. 1 (ADM1) for enhanced understanding and application of the anaerobic treatment processes - A comprehensive review

Anaerobic digestion (AD) is a promising method for the recovery of resources and energy from organic wastes. Correspondingly, AD modelling has also been developed in recent years. The International Water Association (IWA) Anaerobic Digestion Model No. 1 (ADM1) is currently the most commonly used structured AD model. However, as substrates become more complex and our understanding of the AD mechanism grows, both systematic and specific modifications have been applied to the ADM1. Modified models have provided a diverse range of application besides AD processes, such as fermentation and biogas upgrading processes. This paper reviews research on the modification of the ADM1, with a particular focus on processes, kinetics, stoichiometry and parameters, which are the major elements of the model. The paper begins with a brief introduction to the ADM1, followed by a summary of modifications, including extensions to the model structure, modifications to kinetics (including inhibition functions) and stoichiometry, as well as simplifications to the model. The paper also covers kinetic parameter estimation and validation of the model, as well as practical applications of the model to a variety of scenarios. The review highlights the need for improvements in simulating AD and biogas upgrading processes, as well as the lack of full-scale applications to other substrates besides sludge (such as food waste and agricultural waste). Future research directions are suggested for model development based on detailed understanding of the anaerobic treatment mechanisms, and the need to recover of valuable products.

Model Organisms To Study Methanogenesis, a Uniquely Archaeal Metabolism

Methanogenic archaea are the only organisms that produce CH4 as part of their energy-generating metabolism. They are ubiquitous in oxidant-depleted, anoxic environments such as aquatic sediments, anaerobic digesters, inundated agricultural fields, the rumen of cattle, and the hindgut of termites, where they catalyze the terminal reactions in the degradation of organic matter. Methanogenesis is the only metabolism that is restricted to members of the domain Archaea. Here, we discuss the importance of model organisms in the history of methanogen research, including their role in the discovery of the archaea and in the biochemical and genetic characterization of methanogenesis. We also discuss outstanding questions in the field and newly emerging model systems that will expand our understanding of this uniquely archaeal metabolism.

Interspecies Formate Exchange Drives Syntrophic Growth of Syntrophotalea carbinolica and Methanococcus maripaludis

The complete remineralization of organic matter in anoxic environments relies on communities of microorganisms that ferment organic acids and alcohols to CH₄. This is accomplished through syntrophic association of H₂ or formate producing bacteria and methanogenic archaea, where exchange of these intermediates enables growth of both organisms. While these communities are essential to Earth's carbon cycle, our understanding of the dynamics of H₂ or formate exchanged is limited. Here, we establish a model partnership between Syntrophotalea carbinolica and Methanococcus maripaludis. Through sequencing a transposon mutant library of M. maripaludis grown with ethanol oxidizing S. carbinolica, we found that genes encoding the F₄₂₀-dependent formate dehydrogenase (Fdh) and F₄₂₀-dependent methylene-tetrahydromethanopterin dehydrogenase (Mtd) are important for growth. Competitive growth of M. maripaludis mutants defective in either H₂ or formate metabolism verified that, across multiple substrates, interspecies formate exchange was dominant in these communities. Agitation of these cultures to facilitate diffusive loss of H₂ to the culture headspace resulted in an even greater competitive advantage for M. maripaludis strains capable of oxidizing formate. Finally, we verified that an M. maripaludis Δmtd mutant had a defect during syntrophic growth. Together, these results highlight the importance of formate exchange for the growth of methanogens under syntrophic conditions. IMPORTANCE In the environment, methane is typically generated by fermentative bacteria and methanogenic archaea working together in a process called syntrophy. Efficient exchange of small molecules like H₂ or formate is essential for growth of both organisms. However, difficulties in determining the relative contribution of these intermediates to methanogenesis often hamper efforts to understand syntrophic interactions. Here, we establish a model syntrophic coculture composed of S. carbinolica and the genetically tractable methanogen M. maripaludis. Using mutant strains of M. maripaludis that are defective for either H₂ or formate metabolism, we determined that interspecies formate exchange drives syntrophic growth of these organisms. Together, these results advance our understanding of the degradation of organic matter in anoxic environments.

Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Diversity of viruses infecting non-extremophilic archaea has been grossly understudied. This is particularly the case for viruses infecting methanogenic archaea, key players in the global carbon biogeochemical cycle. Only a dozen of methanogenic archaeal viruses have been isolated so far. In the present study, we implemented an original coupling between stable isotope probing and complementary shotgun metagenomic analyses to identify viruses of methanogens involved in the bioconversion of formate, which was used as the sole carbon source in batch anaerobic digestion microcosms. Under our experimental conditions, the microcosms were dominated by methanogens belonging to the order Methanobacteriales (Methanobacterium and Methanobrevibacter genera). Metagenomic analyses yielded several previously uncharacterized viral genomes, including a complete genome of a head-tailed virus (class Caudoviricetes, proposed family Speroviridae, Methanobacterium host) and several near-complete genomes of spindle-shaped viruses. The two groups of viruses are predicted to infect methanogens of the Methanobacterium and Methanosarcina genera and represent two new virus families. The metagenomics results are in good agreement with the electron microscopy observations, which revealed the dominance of head-tailed virus-like particles and the presence of spindle-shaped particles. The present study significantly expands the knowledge on the viral diversity of viruses of methanogens.

The response regularity of biohydrogen production by anthracite H2-producing bacteria consortium to six conventional veterinary antibiotics

The impact of antibiotics on H₂-producing bacteria must be considered in the industrialization of biological H₂ production using livestock manure as raw resources. However, whether antibiotics that may be contained in excreta will threaten the safety of biohydrogen production needs to be researched. This study explored the impact characteristics and mechanism of six single antibiotics and three groups of compound antibiotics on H₂ production. Experiments confirmed that most antibiotics have different degrees of H₂ production inhibition, while some antibiotics, which like Penicillin G, Streptomycin Sulfate, and their compound antibiotics, could promote the growth of Ethanoligenens sp. and improve H₂ yield on the contrary. Comprehensive analysis shows that the main inhibitory mechanisms were: (1) board-spectrum inhibition, (2) partial inhibition, (3) H₂ consumption enhancement; and the enhancement mechanisms were: (1) enhance the growth of H₂-producing bacteria, (2) enhanced starch hydrolysis, (3) inhibitory H₂ consumption or release of acid inhibition. Meanwhile, experiment found that the effect of antibiotics on H₂ producing was not only related to type, but also to dosage. Even one kind of antibiotic may have completely opposite effects on H₂-producing bacteria under different dosage conditions. Inhibition of H₂ yield was highest with Levofloxacin at 6.15 mg/L, gas production was reduced by 88.77%; and enhancement of H₂ yield was highest with Penicillin G at 7.20 mg/L, the gas production increased by 72.90%. In the selection of raw material, the type and content of antibiotics demand a detailed investigation and analysis to ensure that the sustainability of H₂ yield.

Noninvasive fecal metabolic profiling for the evaluation of characteristics of thermostable lactic acid bacteria, Weizmannia coagulans SANK70258, for broiler chickens

Weizmannia coagulans SANK70258 is a spore-forming thermostable lactic acid bacterium and an effective probiotic for the growth of livestock animals, but its growth-promoting mechanism remains unclear. Here, the composition of fecal metabolites in broilers continuously administered with W. coagulans SANK70258 was assessed under a regular program with antibiotics, which was transiently given for 6 days after birth. Oral administration of W. coagulans to broiler chicks tended to increase the average daily gain of body weights thereafter. The composition of fecal metabolites in the early chick stage (Day 10 after birth) was dramatically altered by the continuous exposure. The levels of short-chain fatty acids (SCFAs) propionate and butyrate markedly increased, while those of acetate, one of the SCFAs, and lactate were reduced. Simultaneously, arabitol, fructose, mannitol, and erythritol, which are carbohydrates as substrates for gut microbes to produce SCFAs, also increased along with altered correlation. Correlation network analyses classified the modularity clusters (|r| > 0.7) among carbohydrates, SCFAs, lactate, amino acids, and the other metabolites under the two conditions. The characteristic diversities by the exposure were visualized beyond the perspective associated with differences in metabolite concentrations. Further, enrichment pathway analyses showed that metabolic composition related to biosynthesis and/or metabolism for SCFAs, amino acids, and energy were activated. Thus, these observations suggest that W. coagulans SANK70258 dramatically modulates the gut metabolism of the broiler chicks, and the metabolomics profiles during the early chick stages may be associated with growth promotion.

Effect of Calcination Temperature on Cu-Modified Ni Catalysts Supported on Mesocellular Silica for Methane Decomposition

Catalytic methane decomposition has been considered suitable for the green and sustainable production of high-purity H₂ to help reduce greenhouse gas emissions. This research developed a copper-modified nickel-supported mesocellular silica NiCu/MS(x) catalyst synthesized at different calcination temperatures to improve the activity and stability in the CH₄ decomposition reaction at 600 °C. Ni and Cu metals were loaded on a mesocellular silica (MS) support using a co-impregnation method and calcined at different temperatures (500, 600, 700, and 800 °C). The NiCu/MS(600) catalyst not only had the highest H₂ yield (32.78%), which was 1.47-3.87 times higher than those of the other NiCu/MS(x) catalysts, but also showed better stability during the reaction. Calcination at 600 °C helps improve the active nickel dispersion, the reducibility of the NiCu catalyst, and the interaction of the NiCu-MS support, leading to the formation of fishbone and platelet carbon nanofibers via a tip-growth mechanism, resulting in the NiCu metals remaining active during the reaction.