Co-response of Fe-reducing/oxidizing bacteria and Fe species to the dynamic redox cycles of natural sediment

A critical review of microbial profiles in black and odorous waters

Black and odorous waters (BOWs) are a serious environmental problem frequently reported over the past few decades. Microorganisms are identified as implementors of the black and odorous phenomenon, which play a crucial role in the decomposition and transformation of pollutants within the BOWs. However, the information on the role of microorganisms in BOWs remains elusive. BOWs are characterized by high concentrations of organic compounds and limited oxygen inputs, which have facilitated the emergence of distinct microbial species. The algae, hydrolytic and fermentative bacterium, sulfate-reducing bacteria, Fe-reducing bacteria and other microorganisms play an important role in the process of blackening and odorization of waters. Studying these specific microbial taxonomies provides valuable insights into their adaptations and contributions to the overall functioning of BOWs. This study comprehensively reviews 1) the microbial community structure, assembly and succession in BOWs; 2) the key microbial profiles involved in BOWs formation; 3) the interspecies interactions process in the BOWs, which are the issues easily overlooked but deserve further research and development.

Control of dissolved H2 concentration enhances electron generation, transport and TCE reduction by indigenous microbial community

Electrokinetic enhanced bioremediation (EK-Bio) is practical for trichloroethene (TCE) dechlorination because the cathode can produce a wide range of dissolved H2 (DH) concentrations of 1.3-0 mg/L from the electrode to the aquifer. In this study, TCE dechlorination was investigated under different DH concentrations. The mechanisms were discussed by analyzing the microbial community structure and abundance of organohalide-respiring bacteria (OHRB) using 16S rRNA, and the gene abundances of key enzymes in the TCE electron transport chain using metagenomic analysis. The results showed that the moderate DH concentration of 0.19-0.53 mg/L exhibited the most pronounced TCE dechlorination, even better than the higher DH concentrations, due to the optimal redox environment, the enrichments of OHRB, reductive dehalogenase (rdhA) genes and key enzyme genes in the electron generation and transport chain. More electrons were obtained from H2 metabolism by Dehalobacter by promoting the formation of [NiFe] hydrogenase (HupS/L/C) or from glycolysis by versatile OHRB by stimulating the formation of formate and enriching formate dehydrogenase (FDH) under moderate DH conditions. In addition, the enhanced amino acid metabolism improved the vitamin K cycle for electron transport and enriched the reductive dechlorinating enzyme (RDase) genes. This study identifies the optimal DH concentration that facilitates bioremediation efficiency, provides insights into microbial community shifts and key enzymatic pathways in EK-Bio remediation.

Recent Progress in Molecular Oxygen Activation by Iron-Based Materials: Prospects for Nano-Enabled In Situ Remediation of Organic-Contaminated Sites

In situ chemical oxidation (ISCO) is commonly used for the remediation of contaminated sites, and molecular oxygen (O2) after activation by aquifer constituents and artificial remediation agents has displayed potential for efficient and selective removal of soil and groundwater contaminants via ISCO. In particular, Fe-based materials are actively investigated for O2 activation due to their prominent catalytic performance, wide availability, and environmental compatibility. This review provides a timely overview on O2 activation by Fe-based materials (including zero-valent iron-based materials, iron sulfides, iron (oxyhydr)oxides, and Fe-containing clay minerals) for degradation of organic pollutants. The mechanisms of O2 activation are systematically summarized, including the electron transfer pathways, reactive oxygen species formation, and the transformation of the materials during O2 activation, highlighting the effects of the coordination state of Fe atoms on the capability of the materials to activate O2. In addition, the key factors influencing the O2 activation process are analyzed, particularly the effects of organic ligands. This review deepens our understanding of the mechanisms of O2 activation by Fe-based materials and provides further insights into the application of this process for in situ remediation of organic-contaminated sites.

Revealing microbial community assembly patterns and succession process in the blackening process of black-odor water

Human-imported pollutants could induce water black, changing microbial community structure and function. Employed 16S rRNA high-throughput sequencing, field-scale investigations and laboratory-scale experiments were successively conducted to reveal mechanistic insights into microbial community assembly and succession of black-odor waters (BOWs). In the field-scale investigation, livestock breeding wastewater (56.7 ± 3.2%) was the most critical microbial source. Moreover, fermentation (27.1 ± 4.4%) was found to be the dominant function. Combined with laboratory experiments, the critical environmental factors, such as total organic carbon (30-100 mg/L), ammonia nitrogen (2.5-9 mg/L), initial dissolved oxygen (2-8 mg/L) and chlorophyll a (0-90 mg/L), impacted the intensity of blackening. The differentiation of ecological niches within the microbial community played a significant role in driving the blackening speed. In laboratory-scale experiments, the microbial ecological niche determined the blackening timing and dominations of the stochastic processes in the microbial assembly process (88 - 51%). The three stages, including the anaerobic degradation stage, blackening stage and slow recovery stage, were proposed to understand the assembly of the microbial communities. These findings enhance our understanding of microorganisms in BOWs and provide valuable insights for detecting and managing heavily organic polluted waters.

Response of TCE biodegradation to elevated H2 and O2: Implication for electrokinetic-enhanced bioremediation

The study investigated the influences of pure H2 and O2 introduction, simulating gases produced from the electrokinetic-enhanced bioremediation (EK-Bio), on TCE degradation, and the dynamic changes of the indigenous microbial communities. The dissolved hydrogen (DH) and oxygen (DO) concentrations ranged from 0.2 to 0.7 mg/L and 2.6 to 6.6 mg/L, respectively. The biological analysis was conducted by 16S rRNA sequencing and functional gene analyses. The results showed that the H2 introduction enhanced TCE degradation, causing a 90.4% TCE removal in the first 4 weeks, and 131.1 μM was reduced eventually. Accordingly, cis-dichloroethylene (cis-DCE) was produced as the only product. The following three ways should be responsible for this promoted TCE degradation. Firstly, the high DH rapidly reduced the oxidation-reduction potential (ORP) value to around -500 mV, beneficial to TCE microbial dechlorination. Secondly, the high DH significantly changed the community and promoted the enrichment of TCE anaerobic dechlorinators, such as Sulfuricurvum, Sulfurospirillum, Shewanella, Geobacter, and Desulfitobacterium, and increased the abundance of dechlorination gene pceA. Thirdly, the high DH promoted preferential TCE dechlorination and subsequent sulfate reduction. However, TCE bio-remediation did not occur in a high DO environment due to the reduced aerobic function or lack of functional bacteria or co-metabolic substrate. The competitive dissolved organic carbon (DOC) consumption and unfriendly microbe-microbe interactions also interpreted the non-degradation of TCE in the high DO environment. These results provided evidence for the mechanism of EK-Bio. Providing anaerobic obligate dechlorinators, and aerobic metabolic bacteria around the electrochemical cathodes and anodes, respectively, or co-metabolic substrates to the anode can be feasible methods to promote remediation of TCE-contaminated shallow aquifer under EK-Bio technology.

Immobilization of phosphorus in water-sediment system by iron-modified attapulgite, calcite, bentonite and dolomite under feed input condition: Efficiency, mechanism, application mode effect and response of microbial communities and iron mobilization

Four kinds of iron-based materials, i.e., iron-modified attapulgite, calcite, bentonite and dolomite (abbreviated as Fe-ATP, Fe-CA, Fe-BT and Fe-DOL, respectively) were prepared and used to immobilize the phosphorus in the system of overlying water (O-water) and sediment under the feed input condition, and their immobilization efficiencies and mechanisms were investigated. The influence of application mode on the immobilization of phosphorus in the water-sediment system by Fe-ATP, Fe-CA, Fe-BT and Fe-DOL was researched. The effects of Fe-ATP, Fe-CA, Fe-BT and Fe-DOL on the concentration of labile iron in the water-sediment system and the microbial communities in sediment were also studied. The results showed that the Fe-ATP, Fe-CA, Fe-BT and Fe-DOL addition all can effectively immobilize the soluble reactive phosphorus (SRP), dissolved total phosphorus (DTP) and diffusive gradients in thin-films (DGT)-labile phosphorus in O-water under the feed input condition, and also had the ability to inactivate the DGT-labile phosphorus in the top sediment. Although the change in the application mode from the one-time addition to the multiple addition reduced the inactivation efficiencies of SRP and DTP in O-water in the early period of application, it increased the immobilization efficiencies in the later period of application. Although Fe-ATP, Fe-CA, Fe-BT and Fe-DOL had a certain releasing risk of iron into the pore water, they had negligible risk of iron release into O-water. The addition of Fe-ATP, Fe-CA, Fe-BT or Fe-DOL reshaped the sediment bacterial community structure and can affect the microorganism-driven phosphorus cycle in the sediment. Results of this work suggest that Fe-ATP, Fe-CA, Fe-BT and Fe-DOL are promising phosphorus-inactivation materials to immobilize the phosphorus in the water-sediment system under the feed input condition.

Filtration columns containing waste iron shavings, loofah, and plastic shavings for further removal of nitrate and phosphate from wastewater effluent

A novel pilot-scale advanced treatment system combining waste products as fillers is proposed and established to enhance the removal of nitrate (NO₃^--N) and phosphate (PO₄^3--P) from secondary treated effluent. The system consists of four modular filter columns, one containing iron shavings (R1), two containing loofahs (R2 and R3), and one containing plastic shavings (R4). The monthly average concentration of total nitrogen (TN) and total phosphorus (TP) decreased from 8.87 to 2.52 mg/L and 0.607 to 0.299 mg/L, respectively. Micro-electrolysis of iron shavings produces Fe²⁺ and Fe³⁺ to remove PO₄^3--P, while oxygen (O₂) consumption creates anoxic conditions for subsequent denitrification. Gallionellaceae, iron-autotrophic Microorganisms, enriched the surface of iron shavings. The loofah served as a carbon source to remove NO₃^--N, and its porous mesh structure facilitated the attachment of biofilm. The plastic shavings intercepted suspended solids and degraded excess carbon sources. This system can be scaled up and installed at wastewater plants to improve the water quality of effluent cost-effectively.

Suspended phosphorus sustains algal blooms in a dissolved phosphorus-depleted lake

The expansion of algal bloom in surface waters is a global problem in the freshwater ecosystem. Differential reactivity of organic phosphorus (P_o) compounds from organic debris, suspended particulate matter (SPM), and sediment towards hydrolysis can dictate the extent of supply often limited inorganic P (P_i) for algal growth, thereby controlling the extent of bloom. Here, we combined solution P-31 nuclear magnetic resonance (³¹P NMR), sequential extraction, enzymatic hydrolysis, and 16S rRNA measurements to characterize speciation and biogeochemical cycling of P in Lake Erhai, China. Lower ratios of diester-P/monoester-P in SPM in January (mean 0.09) and July (0.14) than that in April (0.29) reflected the higher degree of diester-P remineralization in cold and warm months. Both H₂O-P_i and P_o were significantly higher in SPM (mean 1580 mg ·kg^-1 and 1618 mg ·kg^-1) than those in sediment (mean 8 mg ·kg^-1 and 387 mg ·kg^-1). In addition, results from enzymatic hydrolysis experiments demonstrated that 61% P_o in SPM and 58% in sediment in the H₂O, NaHCO₃, and NaOH extracts could be hydrolyzed. These results suggested that H₂O-P_i and P_o from SPM were the primarily bioavailable P sources for algae. Changes of P_i contents (particularly H₂O-P_i) in algae and alkaline phosphatase activity (APA) during the observation periods were likely to be controlled by the strategies of P uptake and utilization of algae. P remobilization/remineralization from SPM likely resulted from algae and bacteria (e.g., Pseudomonas). Collectively, these results provide important insights that SPM P could sustain the algal blooms even if the dissolved P was depleted in the water column.