Metagenomic insights into the prokaryotic communities of heavy metal-contaminated hypersaline soils

Strategies of Environmental Adaptation in the Haloarchaeal Genera Haloarcula and Natrinema

Haloarchaea, a group of extremophilic archaea, thrive in hypersaline environments characterized not only by high salinity but also by other extreme conditions, such as intense UV radiation, high osmotic pressure, heavy metal contamination, oxidative stress, and fluctuating temperatures. This study investigates the environmental adaptation strategies of species of two genera, Haloarcula and Natrinema, the second and third largest haloarchaeal genera, respectively, after Halorubrum. Comparative genomic analyses were conducted on 48 species from both genera to elucidate their genomic diversity, metabolic potential, and stress-tolerance mechanisms. The genomes revealed diverse metabolic pathways, including rhodopsin-mediated phototrophy, nitrogen assimilation, and thiamine biosynthesis, which support their survival and adaptation to extreme conditions. The analysis identified mechanisms for oxidative stress mitigation, DNA repair, "salt-in" and "salt-out" osmoregulatory strategies, adaptations to temperature shifts and heavy metal exposure, and immune defense. Experimental validation of four representative species, Haloarcula terrestris S1AR25-5AT, Haloarcula saliterrae S1CR25-12T, Haloarcula onubensis S3CR25-11T, and Natrinema salsiterrestre S1CR25-10T, isolated from the heavy-metal-rich hypersaline soils in the Odiel Saltmarshes (Huelva, Spain), demonstrated their tolerance, especially to arsenic, corroborating genomic predictions. This study advances our understanding of the resilience of haloarchaea under poly-extreme conditions and underscores their ecological significance and promise for biotechnological applications, such as the bioremediation of heavy-metal-polluted environments and the production of valuable biomolecules.

Surfing in the storm: how Paraburkholderia xenovorans thrives under stress during biodegradation of toxic aromatic compounds and other stressors

The adaptive mechanisms of Burkholderiales during the catabolism of aromatic compounds and abiotic stress are crucial for their fitness and performance. The aims of this report are to review the bacterial adaptation mechanisms to aromatic compounds, oxidative stress, and environmental stressful conditions, focusing on the model aromatic-degrading Paraburkholderia xenovorans LB400, other Burkholderiales, and relevant degrading bacteria. These mechanisms include (i) the stress response during aromatic degradation, (ii) the oxidative stress response to aromatic compounds, (iii) the metabolic adaptation to oxidative stress, (iv) the osmoadaptation to saline stress, (v) the synthesis of siderophore during iron limitation, (vi) the proteostasis network, which plays a crucial role in cellular function maintenance, and (vii) the modification of cellular membranes, morphology, and bacterial lifestyle. Remarkably, we include, for the first time, novel genomic analyses on proteostasis networks, carbon metabolism modulation, and the synthesis of stress-related molecules in P. xenovorans. We analyzed these metabolic features in silico to gain insights into the adaptive strategies of P. xenovorans to challenging environmental conditions. Understanding how to enhance bacterial stress responses can lead to the selection of more robust strains capable of thriving in polluted environments, which is critical for improving biodegradation and bioremediation strategies.

The collaboration and competition between indigenous microorganisms and exogenous anaerobic digester sludge in anaerobic treatment of pickled mustard wastewater at different salinities

The highly concentrated pickled mustard wastewater presents significant potential for energy recovery, but the stress effect of high osmotic pressure on cell integrity and activity seriously impedes the methane production by anaerobic microorganisms. The survival ability of indigenous microorganisms (IM) in pickled mustard wastewater supports the establishment of anaerobic treatment. Moreover, inoculation of anaerobic digester sludge is a common start-up strategy. However, the effects of exogenous anaerobic sludge on IM are unclear, especially in hypersaline environment. This research aimed to investigate the influence of exogenous anaerobic sludge on the construction, performance, and microbiota at 3% and 5% salinity. And the research focused on the collaboration and competition between exogenous anaerobic sludge and IM. The neutral community model (which explains the formation and evolution of biological communities) indicated that the interaction between exogenous digester sludge microorganisms and IM dominated community assembly. At 3%, the digester sludge collaborated with IM to increase daily COD reduction and biogas production compared with IM group. However, at 5%, the competitive relationship reduced daily COD reduction and biogas production compared with IM group. This study provides a new perspective for the selection of inoculation strategies for exogenous anaerobic digester sludge under different salinity, in order to realize energy conversion from salinity organic wastewater.