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Hisham MB, Hashim AM, Mohd Hanafi N, Abdul Rahman N, Abdul Mutalib NE, Tan CK, Nazli MH, Mohd Yusoff NF. Bacterial communities associated with silage of different forage crops in Malaysian climate analysed using 16S amplicon metagenomics. Sci Rep 2022; 12:7107. [PMID: 35501317 PMCID: PMC9061801 DOI: 10.1038/s41598-022-08819-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 03/07/2022] [Indexed: 01/21/2023] Open
Abstract
Silage produced in tropical countries is prone to spoilage because of high humidity and temperature. Therefore, determining indigenous bacteria as potential inoculants is important to improve silage quality. This study aimed to determine bacterial community and functional changes associated with ensiling using amplicon metagenomics and to predict potential bacterial additives associated with silage quality in the Malaysian climate. Silages of two forage crops (sweet corn and Napier) were prepared, and their fermentation properties and functional bacterial communities were analysed. After ensiling, both silages were predominated by lactic acid bacteria (LAB), and they exhibited good silage quality with significant increment in lactic acid, reductions in pH and water-soluble carbohydrates, low level of acetic acid and the absence of propionic and butyric acid. LAB consortia consisting of homolactic and heterolactic species were proposed to be the potential bacterial additives for sweet corn and Napier silage fermentation. Tax4fun functional prediction revealed metabolic pathways related to fermentation activities (bacterial division, carbohydrate transport and catabolism, and secondary metabolite production) were enriched in ensiled crops (p < 0.05). These results might suggest active transport and metabolism of plant carbohydrates into a usable form to sustain bacterial reproduction during silage fermentation, yielding metabolic products such as lactic acid. This research has provided a comprehensive understanding of bacterial communities before and after ensiling, which can be useful for desirable silage fermentation in Malaysia.
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Affiliation(s)
- Minhalina Badrul Hisham
- Agro-Biotechnology Malaysia Institutes (ABI), National Institutes of Biotechnology Malaysia (NIBM), Ministry of Science, Technology and Innovation (MOSTI), c/o MARDI Headquarters, 43400, Serdang, Selangor, Malaysia
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Amalia Mohd Hashim
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
- Halal Products Research Institute, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
| | - Nursyuhaida Mohd Hanafi
- Agro-Biotechnology Malaysia Institutes (ABI), National Institutes of Biotechnology Malaysia (NIBM), Ministry of Science, Technology and Innovation (MOSTI), c/o MARDI Headquarters, 43400, Serdang, Selangor, Malaysia.
| | - Norafizah Abdul Rahman
- Agro-Biotechnology Malaysia Institutes (ABI), National Institutes of Biotechnology Malaysia (NIBM), Ministry of Science, Technology and Innovation (MOSTI), c/o MARDI Headquarters, 43400, Serdang, Selangor, Malaysia
| | - Nur Elina Abdul Mutalib
- Institutes for Health Systems Research, National Institutes of Health Malaysia (NIH), 40170, Shah Alam, Selangor, Malaysia
| | - Chun Keat Tan
- Agro-Biotechnology Malaysia Institutes (ABI), National Institutes of Biotechnology Malaysia (NIBM), Ministry of Science, Technology and Innovation (MOSTI), c/o MARDI Headquarters, 43400, Serdang, Selangor, Malaysia
| | - Muhamad Hazim Nazli
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Nur Fatihah Mohd Yusoff
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
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Khota W, Pholsen S, Higgs D, Cai Y. Comparative analysis of silage fermentation and in vitro digestibility of tropical grass prepared with Acremonium and Tricoderma species producing cellulases. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES 2018; 31:1913-1922. [PMID: 29879827 PMCID: PMC6212740 DOI: 10.5713/ajas.18.0083] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Accepted: 05/11/2018] [Indexed: 12/02/2022]
Abstract
Objective To find out ways of improving fermentation quality of silage, the comparative analysis of fermentation characteristics and in vitro digestibility of tropical grasses silage applied with cellulases produced from Acremonium or Tricoderma species were studied in Thailand. Methods Fresh and wilted Guinea grass and Napier grass silages were prepared with cellulases from Acremonium (AC) or Trichoderma (TC) at 0.0025%, 0.005%, and 0.01% on a fresh matter (FM), and their fermentation quality, chemical composition and in vitro digestibility were analyzed. Results All silages of fresh Napier grass were good quality with lower pH, butyric acid, and ammonia nitrogen, but higher lactic acid content than wilted Napier grass and Guinea grass silage. Silages treated with AC 0.01% had the best result in terms of fermentation quality. They also had higher in vitro dry matter digestibility and in vitro organic matter digestibility at 6 and 48 h after incubation than other silages. Silages treated with lower levels at 0.005% or 0.0025% of AC and all levels of TC did not improve silage fermentation. Conclusion The AC could improve silage fermentation and in vitro degradation of Guinea grass and Napier grass silages, and the suitable addition ration is 0.01% (73.5 U) of FM for tropical silage preparation.
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Affiliation(s)
- Waroon Khota
- Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Suradej Pholsen
- Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand
| | - David Higgs
- Department of Biological and Environmental Sciences, University of Hertfordshire, AL10 9AB, UK
| | - Yimin Cai
- Japan International Research Center for Agricultural Science (JIRCAS), Tsukuba, Ibaraki 305-8686, Japan
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