Pushing the limit of NMR-based distance measurements - retrieving dipolar couplings to spins with extensively large quadrupolar frequencies

Fungicidal amphotericin B sponges are assemblies of staggered asymmetric homodimers encasing large void volumes

Amphotericin B (AmB) is a powerful but toxic fungicide that operates via enigmatic small molecule-small molecule interactions. This mechanism has challenged the frontiers of structural biology for half a century. We recently showed AmB primarily forms extramembranous aggregates that kill yeast by extracting ergosterol from membranes. Here, we report key structural features of these antifungal 'sponges' illuminated by high-resolution magic-angle spinning solid-state NMR, in concert with simulated annealing and molecular dynamics computations. The minimal unit of assembly is an asymmetric head-to-tail homodimer: one molecule adopts an all-trans C1-C13 motif, the other a C6-C7-gauche conformation. These homodimers are staggered in a clathrate-like lattice with large void volumes similar to the size of sterols. These results illuminate the atomistic interactions that underlie fungicidal assemblies of AmB and suggest this natural product may form biologically active clathrates that host sterol guests.

Solid-State Nuclear Magnetic Resonance Techniques for the Structural Characterization of Geminal Alane-Phosphane Frustrated Lewis Pairs and Secondary Adducts

The first comprehensive solid-state nuclear magnetic resonance (NMR) characterization of geminal alane-phosphane frustrated Lewis pairs (Al/P FLPs) is reported. Their relevant NMR parameters (isotropic chemical shifts, direct and indirect 27 Al-31 P spin-spin coupling constants, and 27 Al nuclear electric quadrupole coupling tensor components) have been determined by numerical analysis of the experimental NMR line shapes and compared with values computed from the known crystal structures by using density functional theory (DFT) methods. Our work demonstrates that the 31 P NMR chemical shifts for the studied Al/P FLPs are very sensitive to slight structural inequivalences. The 27 Al NMR central transition signals are spread out over a broad frequency range (>200 kHz), owing to the presence of strong nuclear electric quadrupolar interactions that can be well-reproduced by the static 27 Al wideband uniform rate smooth truncation (WURST) Carr-Purcell-Meiboom-Gill (WCPMG) NMR experiment. 27 Al chemical shifts and quadrupole tensor components offer a facile and clear distinction between three- and four-coordinate aluminum environments. For measuring internuclear Al⋅⋅⋅P distances a new resonance-echo saturation-pulse double-resonance (RESPDOR) experiment was developed by using efficient saturation via frequency-swept WURST pulses. The successful implementation of this widely applicable technique indicates that internuclear Al⋅⋅⋅P distances in these compounds can be measured within a precision of ±0.1 Å.

Distance measurements to quadrupolar nuclei: Evolution of the rotational echo double resonance technique

Molecular structure determination is the basis for understanding chemical processes and the property of materials. The direct dependence of the magnetic dipolar interaction on the distance makes solid-state nuclear magnetic resonance (NMR) an excellent tool to study molecular structure when X-ray crystallography fails to provide atomic-resolution data. Although techniques to measure distances between pairs of isolated nuclear spin-1/2 pairs are routine and easy to implement using the rotational echo double resonance (REDOR) experiment (Gullion & Schaefer, 1989), the existence of a nucleus with a spin > 1/2, appearing in approximately 75% of the elements in the periodic table, poses a challenge due to difficulties stemming from the large nuclear quadrupolar coupling constant (QCC). This mini-review presents the existing solid-state magic-angle spinning NMR techniques aimed toward the efficient and accurate determination of internuclear distances between a spin-1/2 and a "quadrupolar" nucleus having a spin larger than one half. Analytical expressions are provided for the various recoupling curves stemming from different techniques, and a coherent nomenclature for these various techniques is suggested. Treatment of some special cases such as multiple spin effects and spins with close Larmor frequencies is also discussed. The most advanced methods can recouple spins with quadrupolar frequencies up to tens of megahertz and beyond, expanding the distance measurement capabilities of solid-state NMR to an increasingly growing number of applications and nuclear spin systems.

Structure Solution of Nano-Crystalline Small Molecules Using MicroED and Solid-State NMR Dipolar-Based Experiments

Three-dimensional electron diffraction crystallography (microED) can solve structures of sub-micrometer crystals, which are too small for single crystal X-ray crystallography. However, R factors for the microED-based structures are generally high because of dynamic scattering. That means R factor may not be reliable provided that kinetic analysis is used. Consequently, there remains ambiguity to locate hydrogens and to assign nuclei with close atomic numbers, like carbon, nitrogen, and oxygen. Herein, we employed microED and ssNMR dipolar-based experiments together with spin dynamics numerical simulations. The NMR dipolar-based experiments were 1H-14N phase-modulated rotational-echo saturation-pulse double-resonance (PM-S-RESPDOR) and 1H-1H selective recoupling of proton (SERP) experiments. The former examined the dephasing effect of a specific 1H resonance under multiple 1H-14N dipolar couplings. The latter examined the selective polarization transfer between a 1H-1H pair. The structure was solved by microED and then validated by evaluating the agreement between experimental and calculated dipolar-based NMR results. As the measurements were performed on 1H and 14N, the method can be employed for natural abundance samples. Furthermore, the whole validation procedure was conducted at 293 K unlike widely used chemical shift calculation at 0 K using the GIPAW method. This combined method was demonstrated on monoclinic l-histidine.

Selective 1H-14N Distance Measurements by 14N Overtone Solid-State NMR Spectroscopy at Fast MAS

Accurate distance measurements between proton and nitrogen can provide detailed information on the structures and dynamics of various molecules. The combination of broadband phase-modulated (PM) pulse and rotational-echo saturation-pulse double-resonance (RESPDOR) sequence at fast magic-angle spinning (MAS) has enabled the measurement of multiple 1H-14N distances with high accuracy. However, complications may arise when applying this sequence to systems with multiple inequivalent 14N nuclei, especially a single 1H sitting close to multiple 14N atoms. Due to its broadband characteristics, the PM pulse saturates all 14N atoms; hence, the single 1H simultaneously experiences the RESPDOR effect from multiple 1H-14N couplings. Consequently, no reliable H-N distances are obtained. To overcome the problem, selective 14N saturation is desired, but it is difficult because 14N is an integer quadrupolar nucleus. Alternatively, 14N overtone (OT) NMR spectroscopy can be employed owing to its narrow bandwidth for selectivity. Moreover, owing to the sole presence of two energy levels (m = ± 1), the 14N OT spin dynamics behaves similarly to that of spin-1/2. This allows the interchangeability between RESPDOR and rotational-echo double-resonance (REDOR) since their principles are the same except the degree of 14N OT population transfer; saturation for the former whereas inversion for the latter. As the ideal saturation/inversion is impractical due to the slow and orientation-dependent effective nutation of 14N OT, the working condition is usually an intermediate between REDOR and RESPDOR. The degree of 14N OT population transfer can be determined from the results of protons with short distances to 14N and then can be used to obtain long-distance determination of other protons to the same 14N site. Herein, we combine the 14N OT and REDOR/RESPDOR to explore the feasibility of selective 1H-14N distance measurements. Experimental demonstrations on simple biological compounds of L-tyrosine.HCl, N-acetyl-L-alanine, and L-alanyl-L-alanine were performed at 14.1 T and MAS frequency of 62.5 kHz. The former two consist of a single 14N site, whereas the latter consists of two 14N sites. The experimental optimizations and reliable fittings by the universal curves are described. The extracted 1H-14N distances by OT-REDOR are in good agreement with those determined by PM-RESPDOR and diffraction techniques.

Distance measurements between carbon and bromine using a split-pulse PM-RESPDOR solid-state NMR experiment

Solid-state nuclear magnetic resonance has long been used to probe atomic distances between nearby nuclear spins by virtue of the dipolar interaction. New technological advances have recently enabled simultaneous tuning of the radio-frequency resonance circuits to nuclei with close Larmor frequencies, bringing great promise, among other experiments, also to distance measurements between such nuclei, in particular for nuclei with a spin larger than one-half. However, this new possibility has also required modifications of those experiments since the two nuclei cannot be irradiated simultaneously. When measuring distances between a spin S = 1/2 and a quadrupolar spin (S > ½), this drawback can be overcome by splitting the continuous-wave recoupling pulse applied to the quadrupolar nucleus. We show here that a similar adjustment to a highly-efficient phase-modulated (PM) recoupling pulse enables distance measurements between nuclei with close Larmor frequencies, where the coupled spin experiences a very large coupling. Such an experiment, split phase-modulated RESPDOR, is demonstrated on a 13C-81Br system, where the difference in Larmor frequencies is only 7%, or 11.2 MHz on a 14.1 T magnet. The inter-nuclear distances are extracted using an unscaled analytical formula. Since bromine usually experiences particularly high quadrupolar couplings, as in the current case, we suggest that the split-PM-RESPDOR experiment can be highly beneficial for research on bromo-compounds, including many pharmaceuticals, where carbon-bromine bonds are prevalent, and organo-catalysts utilizing the high reactivity of bromides. We show that for butyl triphenylphosphonium bromide, the solid-state NMR distances are in agreement with a low-hydration compound rather than a water-caged semi-clathrate form. The split-PM-RESPDOR experiment is suitable for distance measurements between any quadrupolar ↔ spin-1/2 pair, in particular when the quadrupolar spin experiences a significantly large coupling.

Highly Transparent Fluorotellurite Glass-Ceramics: Structural Investigations and Luminescence Properties

Crystallization from glass can lead to the stabilization of metastable crystalline phases, which offers an interesting way to unveil novel compounds and control the optical properties of resulting glass-ceramics. Here, we report on a crystallization study of the ZrF₄-TeO₂ glass system and show that under specific synthesis conditions, a previously unreported Te_0.47Zr_0.53O_xF_y zirconium oxyfluorotellurite antiglass phase can be selectively crystallized at the nanometric scale within the 65TeO₂-35ZrF₄ amorphous matrix. This leads to highly transparent glass-ceramics in both the visible and near-infrared ranges. Under longer heat treatment, the stable cubic ZrTe₃O₈ phase crystallizes in addition to the previous unreported antiglass phase. The structure, microstructure, and optical properties of 65TeO₂-35ZrF₄Tm³⁺-doped glass-ceramics, were investigated in detail by means of X-ray diffraction, scanning and transmission electron microscopies, and ¹⁹F, ⁹¹Zr, and ¹²⁵Te NMR, Raman, and photoluminescence spectroscopies. The crystal chemistry study of several single crystals samples by X-ray diffraction evidence that the novel phase, derived from α-UO₃ type, corresponds in terms of long-range ordering inside this basic hexagonal/trigonal disordered phase (antiglass) to a complex series of modulated microphases rather than a stoichiometric compound with various superstructures analogous to those observed in the UO₃-U₃O₈ subsystem. These results highlight the peculiar disorder-order phenomenon occurring in tellurite materials.

Accurate 1H-14N distance measurements by phase-modulated RESPDOR at ultra-fast MAS

The combination of a phase-modulated (PM) saturation pulse and symmetry-based dipolar recoupling into a rotational-echo saturation-pulse double-resonance (RESPDOR) sequence has been employed to measure ¹H-¹⁴N distances. Such a measurement is challenging owing to the quadrupolar interaction of ¹⁴N nucleus and the intense ¹H-¹H homonuclear dipolar interactions. Thanks to the recent advances in probe technology, the homonuclear dipolar interaction can be sufficiently suppressed at a fast MAS frequency (ν_R ≥ 60 kHz). PM pulse is robust to large variations of parameters on quadrupolar spins, but it has not been demonstrated under very fast MAS conditions. On the other hand, the RESPDOR sequence is applicable to such condition when it employs symmetry-based pulses during the recoupling period, but a prior knowledge on the system is required. In this article, we demonstrated the PM-RESPDOR combination for providing accurate ¹H-¹⁴N distances at a very fast MAS frequency of 70 kHz on two samples, namely L-tyrosine⋅HCl and N-acetyl-L-alanine. This sequence, supported by simulations and experiments, has shown its feasibility at ν_R = 70 kHz as well as the robustness to the ¹⁴N quadrupolar interaction. It is applicable to a wide range of ¹H-¹⁴N dipolar coupling constants when a radio frequency field on the ¹⁴N channel is approximately 80 kHz or more, while the PM pulse length lasts 10 rotor periods. For the first time, multiple ¹H-¹⁴N heteronuclear dipolar couplings, thus multiple quantitative distances, are simultaneously and reliably extracted by fitting the experimental fraction curves with the analytical expression. The size of the ¹H-¹⁴N dipolar interaction is solely used as a fitting parameter. These determined distances are in excellent agreement with those derived from diffraction techniques.

How does the mood stabilizer lithium bind ATP, the energy currency of the cell: Insights from solid-state NMR

BACKGROUND

Lithium, in the form of a salt, is a mood stabilizer and a leading drug for the treatment of bipolar disorder. It has a very narrow therapeutic range and a variety of side effects. Lithium can replace magnesium and other cations in enzymes and small molecules, among them ATP, thereby affecting and inhibiting many biochemical pathways. The form of binding of lithium ions to ATP is not known.

METHODS

Here we extract the binding environment of lithium in solid ATP using a multi-nuclear multi-dimensional solid-state NMR approach.

RESULTS

We determine that the coordination sphere of lithium includes, at a distance of 3.0(±0.4) Å, three phosphates; the two phosphates closest to the ribose ring from one ATP molecule, and the middle phosphate from another ATP molecule. A water molecule most probably completes the fourth coordination. Despite the use of excess lithium in the preparations, sodium ions still remain bound to the sample, at distances of 4.3-5.5 Å from Li, and coordinate the first phosphate and two terminal phosphates.

CONCLUSIONS

Solid-state NMR enables to unravel the exact coordination of lithium in ATP showing binding to three phosphates from two molecules, none of which are the terminal gamma phosphate.

GENERAL SIGNIFICANCE

The methods we use are applicable to study lithium bound to a variety of ATP-bound enzymes, or to other cellular targets of lithium, consequently suggesting a molecular basis for its mode of action.

1H-Detected quadrupolar spin-lattice relaxation measurements under magic-angle spinning solid-state NMR

Proton detection and phase-modulated pulse saturation enable the measurement of spin-lattice relaxation times of "invisible" quadrupolar nuclei with extensively large quadrupolar couplings. For nitrogen-14, efficient cross-polarization is obtained with a long-duration preparation pulse. The experiment paves the way to the characterization of a large variety of materials containing halogens, metals and more.