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Abstract
A few months before the COVID-19 pandemic, Pierre Vogel and Kendall N. Houk published with a new textbook Wiley-VCH, “Organic Chemistry: Theory, Reactivity, and Mechanisms in Modern Synthesis”, with a foreword from the late Roberts H. Grubbs. The book demonstrates how catalytic processes dominate all fields of modern organic chemistry and synthesis, and how invention combines thermodynamics, kinetics, spectroscopy, quantum mechanics, and thermochemical data libraries. Here, the authors present a few case studies that should be of interest to teachers, practitioners of organic and organometallic chemistry, and the engineers of molecules. The Vogel–Houk book is both textbook and reference manual; it provides a modern way to think about chemical reactivity and a powerful toolbox to inventors of new reactions and new procedures.
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Gil de Montes E, Jiménez-Moreno E, Oliveira BL, Navo CD, Cal PMSD, Jiménez-Osés G, Robina I, Moreno-Vargas AJ, Bernardes GJL. Azabicyclic vinyl sulfones for residue-specific dual protein labelling. Chem Sci 2019; 10:4515-4522. [PMID: 31057781 PMCID: PMC6482879 DOI: 10.1039/c9sc00125e] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 03/18/2019] [Indexed: 12/31/2022] Open
Abstract
We have developed [2.2.1]azabicyclic vinyl sulfone reagents that simultaneously enable cysteine-selective protein modification and introduce a handle for further bioorthogonal ligation.
We have developed [2.2.1]azabicyclic vinyl sulfone reagents that simultaneously enable cysteine-selective protein modification and introduce a handle for further bioorthogonal ligation. The reaction is fast and selective for cysteine relative to other amino acids that have nucleophilic side-chains, and the formed products are stable in human plasma and are moderately resistant to retro Diels–Alder degradation reactions. A model biotinylated [2.2.1]azabicyclic vinyl sulfone reagent was shown to efficiently label two cysteine-tagged proteins, ubiquitin and C2Am, under mild conditions (1–5 equiv. of reagent in NaPi pH 7.0, room temperature, 30 min). The resulting thioether-linked conjugates were stable and retained the native activity of the proteins. Finally, the dienophile present in the azabicyclic moiety on a functionalised C2Am protein could be fluorescently labelled through an inverse electron demand Diels–Alder reaction in cells to allow selective apoptosis imaging. The combined advantages of directness, site-specificity and easy preparation mean [2.2.1]azabicyclic vinyl sulfones can be used for residue-specific dual protein labelling/construction strategies with minimal perturbation of native function based simply on the attachment of an [2.2.1]azabicyclic moiety to cysteine.
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Affiliation(s)
- Enrique Gil de Montes
- Departamento de Química Orgánica , Facultad de Química , Universidad de Sevilla , C/Prof. García González, 1 , 41012-Sevilla , Spain .
| | - Ester Jiménez-Moreno
- Department of Chemistry , University of Cambridge , Lensfield Road , CB2 1EW Cambridge , UK .
| | - Bruno L Oliveira
- Department of Chemistry , University of Cambridge , Lensfield Road , CB2 1EW Cambridge , UK . .,Instituto de Medicina Molecular , Faculdade de Medicina da Universidade de Lisboa , Av. Prof. Egas Moniz , 1649-028 Lisboa , Portugal
| | - Claudio D Navo
- Departamento de Química , Centro de Investigación en Síntesis Química , Universidad de La Rioja , 26006 Logroño , Spain.,CIC bioGUNE , Bizkaia Technology Park, Building 801A , 48170 Derio , Spain
| | - Pedro M S D Cal
- Instituto de Medicina Molecular , Faculdade de Medicina da Universidade de Lisboa , Av. Prof. Egas Moniz , 1649-028 Lisboa , Portugal
| | - Gonzalo Jiménez-Osés
- Departamento de Química , Centro de Investigación en Síntesis Química , Universidad de La Rioja , 26006 Logroño , Spain.,CIC bioGUNE , Bizkaia Technology Park, Building 801A , 48170 Derio , Spain
| | - Inmaculada Robina
- Departamento de Química Orgánica , Facultad de Química , Universidad de Sevilla , C/Prof. García González, 1 , 41012-Sevilla , Spain .
| | - Antonio J Moreno-Vargas
- Departamento de Química Orgánica , Facultad de Química , Universidad de Sevilla , C/Prof. García González, 1 , 41012-Sevilla , Spain .
| | - Gonçalo J L Bernardes
- Department of Chemistry , University of Cambridge , Lensfield Road , CB2 1EW Cambridge , UK . .,Instituto de Medicina Molecular , Faculdade de Medicina da Universidade de Lisboa , Av. Prof. Egas Moniz , 1649-028 Lisboa , Portugal
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Pérez SJ, Purino MA, Cruz DA, López-Soria JM, Carballo RM, Ramírez MA, Fernández I, Martín VS, Padrón JI. Enantiodivergent Synthesis of (+)- and (−)-Pyrrolidine 197B: Synthesis oftrans-2,5-Disubstituted Pyrrolidines by Intramolecular Hydroamination. Chemistry 2016; 22:15529-15535. [DOI: 10.1002/chem.201602708] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Indexed: 12/16/2022]
Affiliation(s)
- Sixto J. Pérez
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
| | - Martín A. Purino
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
| | - Daniel A. Cruz
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
| | - Juan M. López-Soria
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
- Instituto de Productos Naturales y Agrobiología; Consejo Superior de Investigaciones Científicas (CSIC); C/Francisco Sánchez 3 38206 La Laguna, Tenerife Spain
| | - Rubén M. Carballo
- Laboratorio de Química Farmacéutica; Facultad de Química; Universidad Autónoma de Yucatán, C/41, n°421×26 y 28; 97150 Mérida, Yucatán México
| | - Miguel A. Ramírez
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
| | - Israel Fernández
- Departamento de Química Orgánica I; Facultad de Ciencias Químicas; Universidad Complutense de Madrid; 28040 Madrid Spain
| | - Víctor S. Martín
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
| | - Juan I. Padrón
- Instituto Universitario de Bio-Orgánica “Antonio González” (CIBICAN); “Síntesis Orgánica Sostenible; Unidad Asociada al CSIC”; Departamento de Química Orgánica; Universidad de La Laguna; C/Francisco Sánchez 2 38206 La Laguna, Tenerife Spain
- Instituto de Productos Naturales y Agrobiología; Consejo Superior de Investigaciones Científicas (CSIC); C/Francisco Sánchez 3 38206 La Laguna, Tenerife Spain
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Moreno-Clavijo E, Moreno-Vargas AJ, Carmona AT, Robina I. Strain-promoted retro-Dieckmann-type condensation on [2.2.2]- and [2.2.1]bicyclic systems: a fragmentation reaction for the preparation of functionalized heterocycles and carbocycles. Org Biomol Chem 2014; 11:7016-25. [PMID: 24057443 DOI: 10.1039/c3ob41160e] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The fragmentation reaction of differently functionalized [2.2.2]- and [2.2.1]bicyclic systems that leads to substituted five membered heterocycles and five/six membered carbocycles is broadly studied. This reaction is carried out through a retro-Dieckmann-type condensation on strained [2.2.1]bicyclic β-ketosulfones and their counterparts β-ketoesters under very mild catalytic acid or basic conditions and short reaction times. The same reaction is also achieved on [2.2.2]bicyclic β-ketosulfones requiring harsher reaction conditions.
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Affiliation(s)
- Elena Moreno-Clavijo
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, C/Prof. García-González, 1, E-41012, Seville, Spain.
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Rossegger E, Oláh L, Fischer R, Kaschnitz P, Varga O, Kállay M, Scheipl G, Stelzer F, Wiesbrock F. Synthesis of a poly(2-azanorbornene) with a high degree of cis-TT-stereoregularity and a regular secondary solution structure. Polym Chem 2012. [DOI: 10.1039/c2py20219k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Moreno-Clavijo E, Moreno-Vargas AJ, Kieffer R, Sigstam T, Carmona AT, Robina I. Exploiting the ring strain in bicyclo[2.2.1]heptane systems for the stereoselective preparation of highly functionalized cyclopentene, dihydrofuran, pyrroline, and pyrrolidine scaffolds. Org Lett 2011; 13:6244-7. [PMID: 22066934 DOI: 10.1021/ol2027009] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The high strain of bicyclic systems drives retro-condensation reactions on bridgehead substituted bicyclo[2.2.1]hept-2-enes giving rise to orthogonally functionalized cyclopentene, 2,5-dihydrofuran, and 3-pyrroline scaffolds. Retro-Dieckman reactions were easily carried out on 3-tosyl-(7-carba/7-oxa/7-aza)bicyclo[2.2.1]hept-5-en-2-ones. Retro-aldol reactions of N-Boc-3-tosyl-7-azabicyclo[2.2.1]hept-5-en-2-ol and functionalized N-Boc-3-tosyl-7-azabicyclo[2.2.1]heptan-2-ols yield functionalized pyrrolidine scaffolds stereoselectively. The same reaction does not work with corresponding norbornene and 7-oxanorbornene derivatives.
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Affiliation(s)
- Elena Moreno-Clavijo
- Department of Organic Chemistry, Faculty of Chemistry, University of Seville, Prof. García González, 1, 41012-Seville, Spain
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