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Pupavac D, Nikolić AM, Webster JP, Curtis TP, And Elković B, Newhouse TR, Opsenica IM. Computational Rational Design of Bridgehead Nitrogen Heterocyclic Azobenzene Photoswitches. J Org Chem 2025. [PMID: 40371946 DOI: 10.1021/acs.joc.5c00731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2025]
Abstract
Azobenzenes are proven to be one of the most successful molecular photoswitches applied across different fields such as organic chemistry, material science, cosmetics, and pharmaceuticals. Such a widespread implementation is possible because of their photochromic properties contingent upon the substitution pattern and aryl-core nature. In recent endeavors of molecular design, replacing one or both phenyl rings with heteroaromatics turned out to be a good strategy to access compounds with improved photoswitching properties, as well as to expand molecular diversity. One of the challenges related to the design of new azobenzene photoswitches is that it often includes the synthesis of large libraries of compounds due to limited methods for prediction of their properties. Herein, we present a computationally driven workflow for the design and synthesis of a novel class of azobenzene photoswitches, heteroaryl azobenzenes with N-bridgehead heterocycles─pyrazolo[1,5-a]pyrimidine and 1,2,4-triazolo[1,5-a]pyrimidine. A small library of heteroaryl photoswitches was synthesized, and their photochemical properties were evaluated. Subsequently, these results were used to validate a computational approach, which included the in silico evaluation of a large library of designed photoswitch candidates leading to the synthesis of a new photoswitch with improved spectral properties, red-shifted λmax values.
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Affiliation(s)
- Dunja Pupavac
- Innovative Centre, Faculty of Chemistry, Ltd., Studentski Trg 12-16, 11158 Belgrade, Serbia
| | - Andrea M Nikolić
- University of Belgrade, Faculty of Chemistry, P.O. Box 51, Studentski Trg 16, 11158 Belgrade, Serbia
| | - John-Paul Webster
- Department of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States
| | - Theodore P Curtis
- Department of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States
| | - Boban And Elković
- University of Belgrade, Faculty of Chemistry, P.O. Box 51, Studentski Trg 16, 11158 Belgrade, Serbia
| | - Timothy R Newhouse
- Department of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States
| | - Igor M Opsenica
- University of Belgrade, Faculty of Chemistry, P.O. Box 51, Studentski Trg 16, 11158 Belgrade, Serbia
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2
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Neymash AO, Ulomsky EN, Fedotov VV, Aminov SV, Lyapustin DN, Gorbunov EB, Ishimnikov VA, Slepukhin PA, Rusinov VL. Reconstructive Methodology in the Synthesis of 2-Aminopurine. Molecules 2023; 29:134. [PMID: 38202717 PMCID: PMC10780053 DOI: 10.3390/molecules29010134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/20/2023] [Accepted: 12/23/2023] [Indexed: 01/12/2024] Open
Abstract
A fundamentally new synthetic approach to the synthesis of 2-aminopurine has been developed. It consists in the combination of the creation of a condensed polyazotic heterocyclic tetrazolopyrimidine structure, its transformation into triaminopyrimidine, and its subsequent cyclization into 2-aminopurine. The structure of the obtained compounds was established based on spectral characteristics, and the structure of the intermediate compound 5 was established directly by X-ray diffraction analysis.
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Affiliation(s)
- Artyom O. Neymash
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
| | - Evgeny N. Ulomsky
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
| | - Victor V. Fedotov
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
| | - Semen V. Aminov
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
| | - Daniil N. Lyapustin
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
| | - Evgeny B. Gorbunov
- Institute of Organic Synthesis, Ural Branch of the Russian Academy of Science, Sofii Kovalevskoy St. 22, 620137 Yekaterinburg, Russia; (E.B.G.); (P.A.S.)
| | - Vladislav A. Ishimnikov
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
| | - Pavel A. Slepukhin
- Institute of Organic Synthesis, Ural Branch of the Russian Academy of Science, Sofii Kovalevskoy St. 22, 620137 Yekaterinburg, Russia; (E.B.G.); (P.A.S.)
| | - Vladimir L. Rusinov
- Chemical Engineering Institute, Ural Federal University, 19 Mira St., 620002 Yekaterinburg, Russia; (V.V.F.); (S.V.A.); (D.N.L.); (V.A.I.); (V.L.R.)
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3
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Mamedov VA, Mustakimova LV, Qu ZW, Zhu H, Syakaev VV, Galimullina VR, Shamsutdinova LR, Rizvanov IK, Gubaidullin AT, Sinyashin OG, Grimme S. Divergent Synthesis of 3-(Indol-2-yl)quinoxalin-2-ones and 4-(Benzimidazol-2-yl)-3-methyl(aryl)cinnolines via Polyphosphoric Acid (PPA)-Mediated Intramolecular Rearrangements of 3-(Methyl/aryl(2-phenylhydrazono)methyl)quinoxalin-2-ones. J Org Chem 2023. [PMID: 38033308 DOI: 10.1021/acs.joc.3c01626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2023]
Abstract
Herein, we report a polyphosphoric acid (PPA)-mediated divergent metal-free operation to access a diverse collection of 3-(indol-2-yl)quinoxalin-2-ones and 4-(benzimidazol-2-yl)-3-methylcinnolines in moderate to excellent overall yields. The described process involves two distinct, and competing rearrangements of 3-(methyl(2-phenylhydrazono)methyl)quinoxalin-2-ones, namely [3,3]-sigmatropic Fischer rearrangement with the formation of an indole ring to produce 3-(indol-2-yl)-quinoxalin-2-ones, and Mamedov rearrangement with simultaneous construction of benzimidazole and cinnoline rings to form the new biheterocyclic system─4-(benzimidazol-2-yl)-3-methylcinnolines. The reaction mechanism of both rearrangement channels is explored by extensive dispersion-corrected DFT calculations. It is partcularly remarkable that when 3-(aryl(2-phenylhydrazono)methyl)quinoxalin-2-ones is used, instead of 3-(methyl(2-phenylhydrazono)methyl)quinoxalin-2-ones, reactions proceed regioselectively with the formation of only rearrangement products─4-(benzimidazol-2-yl)-3-arylcinnolines with high yields. This operationally simple protocol enables a rapid access to these scaffolds and is compatible with a wide scope of starting materials. In addition, the new rearrangement found features a promising approach for the design of unique compound libraries for drug design and discovery programs.
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Affiliation(s)
- Vakhid A Mamedov
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Liliya V Mustakimova
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Zheng-Wang Qu
- Mulliken Center for Theoretical Chemistry University of Bonn Beringstr. 4, 53115 Bonn, Germany
| | - Hui Zhu
- Mulliken Center for Theoretical Chemistry University of Bonn Beringstr. 4, 53115 Bonn, Germany
| | - Victor V Syakaev
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Venera R Galimullina
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Leisan R Shamsutdinova
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Il'dar Kh Rizvanov
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Aidar T Gubaidullin
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Oleg G Sinyashin
- A.E. Arbuzov Institute of Organic and Physical Chemistry, RFC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Street 8, 420088 Kazan, Russian Federation
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry University of Bonn Beringstr. 4, 53115 Bonn, Germany
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Gazizov DA, Gorbunov EB, Zhilina EF, Slepukhin PA, Rusinov GL. Direct C–H/C–H Coupling of the Azoloannulated Pteridines with Electron Rich (Hetero)Aromatic Compounds. J Org Chem 2022; 87:13011-13022. [DOI: 10.1021/acs.joc.2c01558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Denis A. Gazizov
- Postovsky Institute of Organic Synthesis, Ural Branch of Russian Academy of Sciences, Sofia Kovalevskoy St. 22/20, Ekaterinburg 620108, Russia
| | - Evgeny B. Gorbunov
- Postovsky Institute of Organic Synthesis, Ural Branch of Russian Academy of Sciences, Sofia Kovalevskoy St. 22/20, Ekaterinburg 620108, Russia
| | - Ekaterina F. Zhilina
- Postovsky Institute of Organic Synthesis, Ural Branch of Russian Academy of Sciences, Sofia Kovalevskoy St. 22/20, Ekaterinburg 620108, Russia
| | - Pavel A. Slepukhin
- Postovsky Institute of Organic Synthesis, Ural Branch of Russian Academy of Sciences, Sofia Kovalevskoy St. 22/20, Ekaterinburg 620108, Russia
- Department of Organic and Biomolecular Chemistry, Ural Federal University, Mira St. 19, Ekaterinburg 620002, Russia
| | - Gennady L. Rusinov
- Postovsky Institute of Organic Synthesis, Ural Branch of Russian Academy of Sciences, Sofia Kovalevskoy St. 22/20, Ekaterinburg 620108, Russia
- Department of Organic and Biomolecular Chemistry, Ural Federal University, Mira St. 19, Ekaterinburg 620002, Russia
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5
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Voinkov EK, Drokin RA, Fedotov VV, Butorin II, Savateev KV, Lyapustin DN, Gazizov DA, Gorbunov EB, Slepukhin PA, Gerasimova NA, Evstigneeva NP, Zilberberg NV, Kungurov NV, Ulomsky EN, Rusinov VL. Azolo[5,1‐
c
][1,2,4]triazines and Azoloazapurines: Synthesis, Antimicrobial activity and
in silico
Studies. ChemistrySelect 2022. [DOI: 10.1002/slct.202104253] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Egor K. Voinkov
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
| | - Roman A. Drokin
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
| | - Victor V. Fedotov
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
| | - Ilya I. Butorin
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
| | - Konstantin V. Savateev
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
| | - Daniil N. Lyapustin
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
| | - Denis A. Gazizov
- I. Ya. Postovskiy Institute of Organic Synthesis Ural Division of the Russian Academy of Sciences 22/20 S. Kovalevskoy st. / Akademicheskaya st. Yekaterinburg Russian Federation
| | - Evgeny B. Gorbunov
- I. Ya. Postovskiy Institute of Organic Synthesis Ural Division of the Russian Academy of Sciences 22/20 S. Kovalevskoy st. / Akademicheskaya st. Yekaterinburg Russian Federation
| | - Pavel A. Slepukhin
- I. Ya. Postovskiy Institute of Organic Synthesis Ural Division of the Russian Academy of Sciences 22/20 S. Kovalevskoy st. / Akademicheskaya st. Yekaterinburg Russian Federation
| | - Natalya A. Gerasimova
- Ural Research Institute of Dermatovenereology and Immunopathology 8 Shcherbakova st. Yekaterinburg Russian Federation
| | - Natalya P. Evstigneeva
- Ural Research Institute of Dermatovenereology and Immunopathology 8 Shcherbakova st. Yekaterinburg Russian Federation
| | - Natalya V. Zilberberg
- Ural Research Institute of Dermatovenereology and Immunopathology 8 Shcherbakova st. Yekaterinburg Russian Federation
| | - Nikolay V. Kungurov
- Ural Research Institute of Dermatovenereology and Immunopathology 8 Shcherbakova st. Yekaterinburg Russian Federation
| | - Evgeny N. Ulomsky
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
- I. Ya. Postovskiy Institute of Organic Synthesis Ural Division of the Russian Academy of Sciences 22/20 S. Kovalevskoy st. / Akademicheskaya st. Yekaterinburg Russian Federation
| | - Vladimir L. Rusinov
- Department of Organic and Biomolecular Chemistry Institute of Chemical Technology Ural Federal University 19 Mira St. Yekaterinburg Russian Federation
- I. Ya. Postovskiy Institute of Organic Synthesis Ural Division of the Russian Academy of Sciences 22/20 S. Kovalevskoy st. / Akademicheskaya st. Yekaterinburg Russian Federation
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