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Hunt LR, Grant PS, Shimokura GK, Furkert DP, Brimble MA. Total Synthesis of (-)-Cordycicadin D and 3,4-trans-Cordycicadins A and B: Entry to the 3,4-trans-Fused Cordycicadin Framework. Angew Chem Int Ed Engl 2025; 64:e202419989. [PMID: 39578232 DOI: 10.1002/anie.202419989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Revised: 11/21/2024] [Accepted: 11/22/2024] [Indexed: 11/24/2024]
Abstract
Cordycicadins A-D are four C20 polyketides, all containing a γ-lactone fused to a 10-membered lactone. The proposed biosynthetic pathway for the cordycicadins anticipates the formation of two more natural products which are unknown. We report the total synthesis of (-)-cordycicadin D and the two anticipated natural products 3,4-trans-cordycicadins A and B. The targets were convergently assembled, in a biomimetic fashion, via an efficient ketene trapping-intramolecular Michael addition sequence that delivered the requisite 3,4-trans-fused framework with high diastereoselectivity, enabled by the synthesis of complex dioxenones that serve as in situ ketene precursors. Recognition of the embedded polyketide symmetry enabled the use of a divergent-convergent synthetic strategy, based on the use of two products from an early-stage enzymatic resolution. The synthetic routes afforded (-)-cordycicadin D in 14 steps and 3,4-trans-cordycicadins A and B in 13 steps (longest linear sequence). This work confirms the structure of (-)-cordycicadin D and the observed instability of the anticipated natural product 3,4-trans-cordycicadin B during purification may explain why it is yet to be isolated.
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Affiliation(s)
- Liam R Hunt
- School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, 1010, New Zealand
- Maurice Wilkins Centre for Molecular Biodiscovery, 23 Symonds Street, Auckland, 1010, New Zealand
| | - Phillip S Grant
- School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, 1010, New Zealand
| | - Grace K Shimokura
- School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, 1010, New Zealand
| | - Daniel P Furkert
- School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, 1010, New Zealand
- Maurice Wilkins Centre for Molecular Biodiscovery, 23 Symonds Street, Auckland, 1010, New Zealand
| | - Margaret A Brimble
- School of Chemical Sciences, University of Auckland, 23 Symonds Street, Auckland, 1010, New Zealand
- Maurice Wilkins Centre for Molecular Biodiscovery, 23 Symonds Street, Auckland, 1010, New Zealand
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2
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Gao DW, Jamieson CS, Wang G, Yan Y, Zhou J, Houk KN, Tang Y. A Polyketide Cyclase That Forms Medium-Ring Lactones. J Am Chem Soc 2020; 143:80-84. [PMID: 33351624 DOI: 10.1021/jacs.0c11226] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Medium-ring lactones are synthetically challenging due to unfavorable energetics involved in cyclization. We have discovered a thioesterase enzyme DcsB, from the decarestrictine C1 (1) biosynthetic pathway, that efficiently performs medium-ring lactonizations. DcsB shows broad substrate promiscuity toward linear substrates that vary in lengths and substituents, and is a potential biocatalyst for lactonization. X-ray crystal structure and computational analyses provide insights into the molecular basis of catalysis.
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Affiliation(s)
| | | | - Gaoqian Wang
- State Key Laboratory of Bio-organic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Shanghai, China
| | | | - Jiahai Zhou
- State Key Laboratory of Bio-organic and Natural Products Chemistry, Center for Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Shanghai, China
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3
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Sudina PR, Motati DR, Seema A. Stereocontrolled Total Synthesis of Nonenolide. JOURNAL OF NATURAL PRODUCTS 2018; 81:1399-1404. [PMID: 29889525 DOI: 10.1021/acs.jnatprod.8b00001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Nonenolide (1) was first isolated from the entomopathogenic fungus Cordyceps militaries BCC2816 and exhibited good antimalarial activity against Plasmodium falciparum K1. Structurally, it features a decanolide with a trans-double bond attached to two chiral hydroxy groups, making the total synthesis of the exclusive isomer of 1 more difficult. Herein, we report the successful synthesis of 1 by employing a MacMillan α-hydroxylation to generate three chiral centers in both the key fragments, starting from 1,6-hexanediol and 1,4-butanediol, followed by Steglich esterification of compounds 2 and 3. The exclusive E-isomer was obtained via a ring-closing metathesis of the mono-PMB-protected diene 19. Deprotection provided the required natural product 1.
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Affiliation(s)
- Purushotham Reddy Sudina
- Division of Natural Product Chemistry , CSIR-Indian Institute of Chemical Technology , Hyderabad - 500007 , India
| | - Damoder Reddy Motati
- Division of Natural Product Chemistry , CSIR-Indian Institute of Chemical Technology , Hyderabad - 500007 , India
| | - Aravind Seema
- Department of Chemistry , Osmania University , Hyderabad - 500007 , India
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4
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Total synthesis and in vitro bioevaluation of clavaminols A, C, H & deacetyl clavaminol H as potential chemotherapeutic and antibiofilm agents. Eur J Med Chem 2016; 120:86-96. [DOI: 10.1016/j.ejmech.2016.04.073] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Revised: 04/26/2016] [Accepted: 04/27/2016] [Indexed: 01/12/2023]
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5
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Avula K, Mohapatra DK. Ring-closing metathesis based total synthesis of ciliatamides A and B and their structural confirmation. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.03.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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6
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Mohapatra DK, Pulluri K, Gajula S, Yadav JS. 13-Step total synthesis of Dendrodolide K following iterative Bartlett–Smith iodocarbonate cyclization. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.09.126] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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7
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8
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Heravi MM, Lashaki TB, Poorahmad N. Applications of Sharpless asymmetric epoxidation in total synthesis. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.tetasy.2015.03.006] [Citation(s) in RCA: 72] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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9
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Mohapatra DK, Reddy DP, Gajula S, Pulluri K, Yadav JS. A Unified Synthetic Strategy for Dendrodolides E, F, G, I, J, and L. ASIAN J ORG CHEM 2015. [DOI: 10.1002/ajoc.201500037] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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10
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Mohapatra DK, Pulluri K, Bhimireddy E, Reddy DP, Yadav JS. Total Syntheses of Dendrodolides A, B, and E. ASIAN J ORG CHEM 2014. [DOI: 10.1002/ajoc.201402126] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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11
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Dayaker G, Krishna PR. Olefin Cross-Metathesis: Studies towards the Total Synthesis of (+)-Bitungolide F. Helv Chim Acta 2014. [DOI: 10.1002/hlca.201300326] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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12
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13
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Mohapatra DK, Umamaheshwar G, Rao MM, Umadevi D, Yadav JS. Concise total synthesis of botryolide B. RSC Adv 2014. [DOI: 10.1039/c3ra44478c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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14
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Bharath Y, Thirupathi B, Ranjit G, Mohapatra DK. An Efficient Synthesis of Dibenzo[b,f]oxepins by Ring-Closing Metathesis. ASIAN J ORG CHEM 2013. [DOI: 10.1002/ajoc.201300141] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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15
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Venkanna A, Sreedhar E, Siva B, Babu KS, Prasad KR, Rao JM. Studies directed towards the total synthesis of koshikalide: stereoselective synthesis of the macrocyclic core. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.tetasy.2013.07.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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16
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Jena BK, Mohapatra DK. Synthesis of the C1–C15 fragment of palmerolide A via protecting group dependent RCM reaction. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.04.069] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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17
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Ma B, Zhong Z, Hu H, Li H, Zhao C, Xie X, She X. Concise Enantioselective Synthesis of Cephalosporolide B, (4R)-4-OMe-Cephalosporolide C, and (4S)-4-OMe-Cephalosporolide C. Chem Asian J 2013; 8:1391-4. [DOI: 10.1002/asia.201300332] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Indexed: 11/09/2022]
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18
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Shibuya M, Doi R, Shibuta T, Uesugi SI, Iwabuchi Y. Organocatalytic one-pot oxidative cleavage of terminal diols to dehomologated carboxylic acids. Org Lett 2012; 14:5006-9. [PMID: 22991924 DOI: 10.1021/ol3021429] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The organocatalytic one-pot oxidative cleavage of terminal 1,2-diols to one-carbon-unit-shorter carboxylic acids is described. The combination of 1-Me-AZADO (cat.), NaOCl (cat.), and NaClO(2) caused smooth one-pot oxidative cleavage under mild conditions. A broad range of substrates including carbohydrates and N-protected amino diols were converted without epimerization. Terminal triols and tetraols respectively underwent cleavage of their C-2 and C-3 moieties to afford their corresponding two- and three-carbon-unit-shorter carboxylic acids.
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Affiliation(s)
- Masatoshi Shibuya
- Department of Organic Chemistry, Graduate School of Pharmaceutical Sciences, Tohoku University, 6-3 Aobayama, Sendai 980-8578, Japan.
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19
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Killen JC, Axford LC, Newberry SE, Simpson TJ, Willis CL. Convergent syntheses of 3,6-dihydroxydec-4-enolides. Org Lett 2012; 14:4194-7. [PMID: 22849633 DOI: 10.1021/ol3018566] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The total syntheses of the 3,6-dihydroxydecanolide from Cordyceps militaris and the novel C-3 epimer are reported using a diastereoselective Nozaki-Hiyama-Kishi reaction in the key cyclization to generate the 6R stereocenter.
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Affiliation(s)
- Jonathan C Killen
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK
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21
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Lu S, Sun P, Li T, Kurtán T, Mándi A, Antus S, Krohn K, Draeger S, Schulz B, Yi Y, Li L, Zhang W. Bioactive nonanolide derivatives isolated from the endophytic fungus Cytospora sp. J Org Chem 2011; 76:9699-710. [PMID: 22011230 DOI: 10.1021/jo201755v] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Cytospolides F-Q (6-17) and decytospolides A and B (18 and 19), 14 unusual nonanolide derivatives, were isolated from Cytospora sp., an endophytic fungus from Ilex canariensis. The structures were elucidated by means of detailed spectroscopic analysis, chemical interconversion, and X-ray single crystal diffraction. The solution- and solid-state conformers were compared by the combination of experimental methods (X-ray, NMR) supported by DFT calculations of the conformers. Absolute configurations were assigned using the modified Mosher's method and solution- and solid-state TDDFT ECD calculations. In an in vitro cytotoxicity assay toward the tumor cell lines of A549, HCT116, QGY, A375, and U973, the γ-lactone 17 demonstrated a potent growth inhibitory activity toward the cell line A-549, while nonanolide 16 with (2S) configuration showed the strongest activity against cell lines A-549, QGY, and U973. A cell cycle analysis indicated that compound 16 can significantly mediate G1 arrest in A549 tumor cells, confirming the important role of the C-2 methyl in the growth inhibition toward the tumor line. The discovery of an array of new nonanolides demonstrates the productivity of the fungus, and it is an example of chemical diversity, extending the nonanolide family by derivatives formed by ring cleavage, oxidation, esterification, and Michael addition.
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Affiliation(s)
- Shan Lu
- Research Center for Marine Drugs, and Department of Pharmacology, School of Pharmacy, Second Military Medical University, 325 Guo-He Road, Shanghai 200433, PR China
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22
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Lu S, Kurtán T, Yang G, Sun P, Mándi A, Krohn K, Draeger S, Schulz B, Yi Y, Li L, Zhang W. Cytospolides A-E, New Nonanolides from an Endophytic Fungus, Cytospora sp. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100675] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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23
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24
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Herndon JW. The chemistry of the carbon–transition metal double and triple bond: Annual survey covering the year 2009. Coord Chem Rev 2011. [DOI: 10.1016/j.ccr.2010.07.003] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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25
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Mohapatra DK, Pattanayak MR, Das PP, Pradhan TR, Yadav JS. Ring-closing metathesis (RCM) based synthesis of the macrolactone core of amphidinolactone A. Org Biomol Chem 2011; 9:5630-2. [DOI: 10.1039/c1ob05335c] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Giri AG, Mondal MA, Puranik VG, Ramana CV. Effect of the allylic substituents on ring closing metathesis: the total synthesis of stagonolide B and 4-epi-stagonolide B. Org Biomol Chem 2010; 8:398-406. [DOI: 10.1039/b916198h] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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Radha Krishna P, Rao TJ. Total synthesis of decarestrictine I and botryolide B via RCM protocol. Org Biomol Chem 2010; 8:3130-2. [DOI: 10.1039/c004556j] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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