1
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Mohammad-Salim H, de Julián-Ortiz JV, Dahlous KA, Islam MS, Almutairi TM, Benmetir S. Elucidating the mechanism and selectivity of [3 + 2] cycloaddition: a DFT and molecular docking investigation of the reaction of 6-butoxy-5,6-dihydro-4H-1,2-oxazine 2-oxide with dimethyl maleate. Struct Chem 2025; 36:339-350. [DOI: 10.1007/s11224-024-02373-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 08/19/2024] [Indexed: 11/25/2024]
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2
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Stoikov II, Antipin IS, Burilov VA, Kurbangalieva AR, Rostovskii NV, Pankova AS, Balova IA, Remizov YO, Pevzner LM, Petrov ML, Vasilyev AV, Averin AD, Beletskaya IP, Nenajdenko VG, Beloglazkina EK, Gromov SP, Karlov SS, Magdesieva TV, Prishchenko AA, Popkov SV, Terent’ev AO, Tsaplin GV, Kustova TP, Kochetova LB, Magdalinova NA, Krasnokutskaya EA, Nyuchev AV, Kuznetsova YL, Fedorov AY, Egorova AY, Grinev VS, Sorokin VV, Ovchinnikov KL, Kofanov ER, Kolobov AV, Rusinov VL, Zyryanov GV, Nosov EV, Bakulev VA, Belskaya NP, Berezkina TV, Obydennov DL, Sosnovskikh VY, Bakhtin SG, Baranova OV, Doroshkevich VS, Raskildina GZ, Sultanova RM, Zlotskii SS, Dyachenko VD, Dyachenko IV, Fisyuk AS, Konshin VV, Dotsenko VV, Ivleva EA, Reznikov AN, Klimochkin YN, Aksenov DA, Aksenov NA, Aksenov AV, Burmistrov VV, Butov GM, Novakov IA, Shikhaliev KS, Stolpovskaya NV, Medvedev SM, Kandalintseva NV, Prosenko OI, Menshchikova EB, Golovanov AA, Khashirova SY. Organic Chemistry in Russian Universities. Achievements of Recent Years. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2024; 60:1361-1584. [DOI: 10.1134/s1070428024080013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 03/28/2024] [Accepted: 03/31/2024] [Indexed: 01/06/2025]
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3
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Donkor B, Umar AR, Opoku E. Mechanistic elucidation of the tandem Diels–Alder/(3 + 2) cycloadditions in the design and syntheses of heterosteroids. J Mol Model 2022; 28:70. [DOI: 10.1007/s00894-022-05063-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 02/16/2022] [Indexed: 11/28/2022]
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4
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Efremova MM, Makarova AA, Novikov AS, Kryukova MA, Kuznetsov MA, Molchanov AP. Regio- and stereoselective (3 + 2)-cycloaddition reactions of nitrones with cyclic allenes. Org Biomol Chem 2021; 19:9773-9784. [PMID: 34730596 DOI: 10.1039/d1ob01584b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
An effective approach to access functionalized 2H-cyclonona(deca)[d]isoxazoles and 15-oxo-3,10-methanobenzo[b][1]azacyclododecines has been developed by the reaction of N-aryl-C,C-bis(methoxycarbonyl)nitrones with cyclonona(deca)-1,2-dienes in a one-pot fashion. The reaction of N-aryl-C-(phenylcarbamoyl)nitrones with these allenes proceeds strictly regioselectively giving the mixtures of diastereomeric isoxazolidines containing a double bond at the C4-position of the isoxazolidine ring. The quantum chemical calculations show that the regioselectivity of these reactions is in good agreement with the reactivity indices of the considered compounds.
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Affiliation(s)
- Mariia M Efremova
- Institute of Chemistry, Saint Petersburg State University (SPbU), Universitetskaya nab. 7/9, Saint Petersburg 199034, Russia.
| | - Anastasia A Makarova
- Institute of Chemistry, Saint Petersburg State University (SPbU), Universitetskaya nab. 7/9, Saint Petersburg 199034, Russia.
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University (SPbU), Universitetskaya nab. 7/9, Saint Petersburg 199034, Russia.
| | - Mariya A Kryukova
- Institute of Chemistry, Saint Petersburg State University (SPbU), Universitetskaya nab. 7/9, Saint Petersburg 199034, Russia.
| | - Mikhail A Kuznetsov
- Institute of Chemistry, Saint Petersburg State University (SPbU), Universitetskaya nab. 7/9, Saint Petersburg 199034, Russia.
| | - Alexander P Molchanov
- Institute of Chemistry, Saint Petersburg State University (SPbU), Universitetskaya nab. 7/9, Saint Petersburg 199034, Russia.
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Thakur S, Das A, Das T. 1,3-Dipolar cycloaddition of nitrones: synthesis of multisubstituted, diverse range of heterocyclic compounds. NEW J CHEM 2021. [DOI: 10.1039/d1nj02023d] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The 1,3-dipolar cycloaddition reaction of nitrone is one of the most important methods for the synthesis of different sizes of heterocycles which have enormous applications in natural products, biologically active molecules and pharmaceuticals.
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Affiliation(s)
- Seema Thakur
- Department of Chemistry
- NIT Jamshedpur
- Jamshedpur 831014
- India
| | - Arunima Das
- Department of Chemistry
- NIT Jamshedpur
- Jamshedpur 831014
- India
| | - Tapas Das
- Department of Chemistry
- NIT Jamshedpur
- Jamshedpur 831014
- India
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6
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Pipim GB, Tia R, Adei E. Investigating the regio-, stereo-, and enantio-selectivities of the 1,3-dipolar cycloaddition reaction of C-cyclopropyl-N-phenylnitrone derivatives and benzylidenecyclopropane derivatives: A DFT study. J Mol Graph Model 2020; 100:107672. [PMID: 32659628 DOI: 10.1016/j.jmgm.2020.107672] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 06/23/2020] [Accepted: 06/24/2020] [Indexed: 01/03/2023]
Abstract
The biomedical importance of spirocyclopropane isoxazolidine derivatives is widely known. The 1,3-dipolar cycloaddition (1,3-DC) of C-cyclopropyl-N-phenylnitrone derivative and benzylidenecyclopropane derivatives leading to the formation of 5- and 4-spirocyclopropane isoxazolidines derivatives have been studied using density functional theory (DFT) at M06-2X/6-311G (d,p) level of theory. An extensive exploration of the potential energy surface shows that the 1,3-dipole adds across the dipolarophile via an asynchronous concerted mechanism. While electron-donating groups (EDGs) on the benzylidenecyclopropane favor the formation of the 4-spirocyclopropane isomer, electron-withdrawing groups (EWGs) favor the reaction channels that furnish the 5-spirocyclopropane isoxazolidine isomer. Both EWDs and EDGs on the 1,3-dipole favor the formation of the 5-spirocyclopropane isoxazolidine isomer. Irrespective of the electronic nature of substituents on the C-cyclopropyl-N-phenylnitrone, the reaction channels that regioselectively lead to the formation of the 5-spirocyclopropane isoxazolidine isomer are favored. In all reactions considered, the channels that selectively lead to the formation of the cis-diastereoisomers proceed with lower activation barriers than the trans-diastereoisomers. In all cases, the observed selectivities in the title reaction are kinetically controlled.
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Affiliation(s)
- George Baffour Pipim
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
| | - Richard Tia
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
| | - Evans Adei
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
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7
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Efremova MM, Molchanov AP, Novikov AS, Starova GL, Muryleva AA, Slita AV, Zarubaev VV. 1,3-Dipolar cycloaddition of N-allyl substituted polycyclic derivatives of isoindole-1,3-dione with nitrones and nitrile oxides: An experimental and theoretical investigation. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131104] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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8
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Molchanov AP, Lukina VM, Efremova MM, Muryleva AA, Slita AV, Zarubaev VV. The 1,3-dipolar cycloaddition of adamantine-derived nitrones with maleimides. SYNTHETIC COMMUN 2020. [DOI: 10.1080/00397911.2020.1738494] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Alexander P. Molchanov
- Institute of Chemistry Saint Petersburg State University, St. Petersburg, Russian Federation
| | - Valentina M. Lukina
- Institute of Chemistry Saint Petersburg State University, St. Petersburg, Russian Federation
| | - Mariia M. Efremova
- Institute of Chemistry Saint Petersburg State University, St. Petersburg, Russian Federation
| | - Anna A. Muryleva
- Saint Petersburg Pasteur Institute, St. Petersburg, Russian Federation
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9
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Pipim GB, Opoku E, Tia R, Adei E. Peri-, Chemo-, Regio-, Stereo- and Enantio-Selectivities of 1,3-dipolar cycloaddition reaction of C,N-Disubstituted nitrones with disubstituted 4-methylene-1,3-oxazol-5(4H)- one: A quantum mechanical study. J Mol Graph Model 2020; 97:107542. [PMID: 32004806 DOI: 10.1016/j.jmgm.2020.107542] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2019] [Revised: 01/15/2020] [Accepted: 01/16/2020] [Indexed: 10/25/2022]
Abstract
The peri-, chemo-, regio-, stereo- and enantio-selectivities of 1,3-dipolar cycloaddition reaction of C,N-disubstituted nitrones with disubstituted 4-methylene-1,3-oxazol-5(4H)-one have been studied using density functional theory (DFT) at the M06-2X/6-311G (d,p) level of theory. The 1,3-dipole preferentially adds chemo-selectively across the olefinic bond in a (3 + 2) fashion forming the corresponding spirocycloadduct. The titled reaction occurs with poor enantio- and stereo-selectivities, but a high degree of regio-selectivity is observed for the addition of the 1,3-dipole across the dipolarophile. Electron-withdrawing groups on the dipolarophile significantly reduce the activation barriers while electron-donating groups on the dipolarophile increase the activation barriers. Analysis of the HOMO and LUMO energies of the two reacting species indicates that the 1,3-dipole reacts as a nucleophile while the dipolarophile reacts as the electrophile. Investigation of the electrophilic Parr function (PK+) at the various reaction centers in the dipolarophile indicates that the 1,3-dipole selectively adds across the atomic species with the largest electrophilic Mulliken and NBO atomic spin densities which is in accordance with the energetic trends observed.
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Affiliation(s)
- George Baffour Pipim
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
| | - Ernest Opoku
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
| | - Richard Tia
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
| | - Evans Adei
- Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
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Washington Denton R, Kempf A, Singh J, C. Merrer D. A Facile Synthesis of 4-Substituted Glutamate Derivative via 1,3-Dipolar Cycloaddition of Dimethyl 2- Methyleneglutarate and Nitrone Derived (-)-Menthone. HETEROCYCLES 2020. [DOI: 10.3987/com-19-14173] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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11
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Chafaa F, Khorief Nacereddine A, Djerourou A. Unravelling the mechanism and the origin of the selectivity of the [3 + 2] cycloaddition reaction between electrophilic nitrone and nucleophilic alkene. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2510-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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12
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Teterina PS, Efremova MM, Sirotkina EV, Novikov AS, Khoroshilova OV, Molchanov AP. A highly efficient and stereoselective cycloaddition of nitrones to N-arylitaconimides. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2019.151063] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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13
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Yanai K, Togo H. Novel preparation of N-arylmethyl-N-arylmethyleneamine N-oxides from benzylic bromides with zinc and isobutyl nitrite. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.05.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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14
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Il’in MV, Sysoeva AA, Bolotin DS, Novikov AS, Suslonov VV, Rogacheva EV, Kraeva LA, Kukushkin VY. Aminonitrones as highly reactive bifunctional synthons. An expedient one-pot route to 5-amino-1,2,4-triazoles and 5-amino-1,2,4-oxadiazoles – potential antimicrobials targeting multi-drug resistant bacteria. NEW J CHEM 2019. [DOI: 10.1039/c9nj04529e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
A four-component one-pot reaction proceeds very rapidly under mild conditions and gives the heterocyclic systems in good yields.
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Affiliation(s)
- Mikhail V. Il’in
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Alexandra A. Sysoeva
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Dmitrii S. Bolotin
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Alexander S. Novikov
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | - Vitalii V. Suslonov
- Center for X-ray Diffraction Studies
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
| | | | - Liudmila A. Kraeva
- Saint Petersburg Pasteur Institute
- Saint Petersburg
- Russian Federation
- S. M. Kirov Military Medical Academy
- Saint Petersburg
| | - Vadim Yu. Kukushkin
- Institute of Chemistry
- Saint Petersburg State University
- Saint Petersburg
- Russian Federation
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15
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Afanaseva KK, Efremova MM, Kuznetsova SV, Ivanov AV, Starova GL, Molchanov AP. The (3+2)- and formal (3+3)-cycloadditions of N-vinylpyrroles with cyclic nitrones and C,N-cyclic azomethine imines. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.07.040] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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16
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Zelenkov LE, Ivanov DM, Avdontceva MS, Novikov AS, Bokach NA. Tetrachloromethane as halogen bond donor toward metal-bound halides. ACTA ACUST UNITED AC 2018. [DOI: 10.1515/zkri-2018-2111] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Abstract
Two annulated triazapentadiene systems, viz. 1,3,5,7,9-pentaazanona-1,3,6,8-tetraenate chloride complexes of PtII, form CCl4 solvates, containing the Cl3C–Cl···Cl–Pt halogen bonds. These halogen bonds are firstly reported type of Cl3C–Cl···Cl–M contacts. In the X-ray structures of two solvates different non-covalent interactions were detected and studied by DFT calculations and topological analysis of the electron density distribution within the framework of QTAIM method at the M06/DZP-DKH level of theory. Estimated energies of these supramolecular contacts vary from 0.6 to 2.4 kcal/mol.
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Affiliation(s)
- Lev E. Zelenkov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab. , Saint Petersburg 199034 , Russian Federation
| | - Daniil M. Ivanov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab. , Saint Petersburg 199034 , Russian Federation
| | - Margarita S. Avdontceva
- Institute of Earth Sciences, Saint Petersburg State University, 7/9 Universitetskaya Nab. , Saint Petersburg 199034 , Russian Federation
| | - Alexander S. Novikov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab. , Saint Petersburg 199034 , Russian Federation
| | - Nadezhda A. Bokach
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab. , Saint Petersburg 199034 , Russian Federation
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