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Ramírez-Palma LG, García-Jacas CR, García-Ramos JC, Almada-Monter R, Galindo-Murillo R, Cortés-Guzmán F. Pharmacophoric sites of anticancer metal complexes located using quantum topological atomic descriptors. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127480] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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García‐Ramos JC, Galindo‐Murillo R, Tovar‐Tovar A, Alonso‐Saenz AL, Gómez‐Vidales V, Flores‐Álamo M, Ortiz‐Frade L, Cortes‐Guzmán F, Moreno‐Esparza R, Campero A, Ruiz‐Azuara L. The π‐Back‐Bonding Modulation and Its Impact in the Electronic Properties of Cu
II
Antineoplastic Compounds: An Experimental and Theoretical Study. Chemistry 2014; 20:13730-41. [DOI: 10.1002/chem.201402775] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Indexed: 11/08/2022]
Affiliation(s)
- Juan Carlos García‐Ramos
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
| | - Rodrigo Galindo‐Murillo
- Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, Utah 84112 (USA)
| | - Araceli Tovar‐Tovar
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
| | - Ana Luisa Alonso‐Saenz
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
| | - Virginia Gómez‐Vidales
- Instituto de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
| | - Marcos Flores‐Álamo
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
| | - Luis Ortiz‐Frade
- Electrochemistry Department, Centro de Investigación y Desarrollo Tecnológico en Electroquímica, S.C. Parque Tecnológico Querétaro, Sanfandila, Pedro de Escobedo, C.P. 76703. Querétaro (México)
| | - Fernando Cortes‐Guzmán
- Instituto de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
- Centro Conjunto de Investigación en Química Sustentable UAEMex‐UNAM, Carretera Toluca‐Atlacomulco Km. 14.5, Toluca, 50200 (México)
| | - Rafael Moreno‐Esparza
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
| | - Antonio Campero
- Departamento de Química Inorgánica, Universidad Autónoma Metropolitana (Iztapalapa), Av. San Rafael Atlixco No. 186, Col. Vicentina, Delegación Iztapalapa, 09340 (Mexico)
| | - Lena Ruiz‐Azuara
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional, Autónoma de México, Av. Universidad 3000, C.U. Mexico City (Mexico)
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Goings JJ, Ohlsen SM, Blaisdell KM, Schofield DP. Sorption of H2 to Open Metal Sites in a Metal–Organic Framework: A Symmetry-Adapted Perturbation Theory Analysis. J Phys Chem A 2014; 118:7411-7. [DOI: 10.1021/jp412779q] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Joshua J. Goings
- Department of Chemistry and
Biochemistry, Seattle Pacific University, Seattle, Washington 98119, United States
| | - Suzanna M. Ohlsen
- Department of Chemistry and
Biochemistry, Seattle Pacific University, Seattle, Washington 98119, United States
| | - Kara M. Blaisdell
- Department of Chemistry and
Biochemistry, Seattle Pacific University, Seattle, Washington 98119, United States
| | - Daniel P. Schofield
- Department of Chemistry and
Biochemistry, Seattle Pacific University, Seattle, Washington 98119, United States
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Spezia R, Jeanvoine Y, Beuchat C, Gagliardi L, Vuilleumier R. Hydration properties of Cm(iii) and Th(iv) combining coordination free energy profiles with electronic structure analysis. Phys Chem Chem Phys 2014; 16:5824-32. [DOI: 10.1039/c3cp54958e] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Galindo-Murillo R, Ruíz-Azuara L, Moreno-Esparza R, Cortés-Guzmán F. Molecular recognition between DNA and a copper-based anticancer complex. Phys Chem Chem Phys 2012; 14:15539-46. [DOI: 10.1039/c2cp42185b] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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García-Ramos JC, Tovar-Tovar A, Hernández-Lima J, Cortés-Guzmán F, Moreno-Esparza R, Ruiz-Azuara L. A new kind of intermolecular stacking interaction between copper (II) mixed chelate complex (Casiopeína III-ia) and adenine. Polyhedron 2011. [DOI: 10.1016/j.poly.2011.07.022] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Gutten O, Beššeová I, Rulíšek L. Interaction of Metal Ions with Biomolecular Ligands: How Accurate Are Calculated Free Energies Associated with Metal Ion Complexation? J Phys Chem A 2011; 115:11394-402. [DOI: 10.1021/jp205442p] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Ondrej Gutten
- Institute of Organic Chemistry and Biochemistry, Gilead Sciences Research Center & IOCB, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Praha 6
| | - Ivana Beššeová
- Institute of Organic Chemistry and Biochemistry, Gilead Sciences Research Center & IOCB, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Praha 6
| | - Lubomír Rulíšek
- Institute of Organic Chemistry and Biochemistry, Gilead Sciences Research Center & IOCB, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Praha 6
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Galindo-Murillo R, Hernandez-Lima J, González-Rendón M, Cortés-Guzmán F, Ruíz-Azuara L, Moreno-Esparza R. π-Stacking between Casiopeinas® and DNA bases. Phys Chem Chem Phys 2011; 13:14510-5. [DOI: 10.1039/c1cp20183b] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Beuchat C, Hagberg D, Spezia R, Gagliardi L. Hydration of lanthanide chloride salts: a quantum chemical and classical molecular dynamics simulation study. J Phys Chem B 2010; 114:15590-7. [PMID: 21053931 DOI: 10.1021/jp105590h] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We present the results of a quantum chemical and classical molecular dynamics simulation study of some solutions containing chloride salts of La(3+), Gd(3+), and Er(3+) at various concentrations (from 0.05 to 5 M), with the purpose of understanding their structure and dynamics and analyzing how the coordination varies along the lanthanide series. In the La-Cl case, nine water molecules surround the central La(3+) cation in the first solvation shell, and chloride is present only in the second shell for all solutions but the most concentrated one (5 M). In the Gd(3+) case, the coordination number is ∼8.6 for the two lowest concentrations (0.05 and 0.1 M), and then it decreases rapidly. In the Er(3+) case, the coordination number is 7.4 for the two lowest concentrations (0.05 and 0.1 M), and then it decreases. The counterion Cl(-) is not present in the first solvation shell in the La(3+) case for most of the solutions, but it becomes progressively closer to the central cation in the Gd(3+) and Er(3+) cases, even at low concentrations.
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Affiliation(s)
- Cesar Beuchat
- Department of Physical Chemistry, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva, Switzerland
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Viegas LP, Branco A, Varandas AJC. How Well Can Kohn−Sham DFT Describe the HO2 + O3 Reaction? J Chem Theory Comput 2010; 6:2751-61. [DOI: 10.1021/ct100364x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Luís P. Viegas
- Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
| | - Adriana Branco
- Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
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