Molecular characterization of "Candidatus Anaplasma testudinis": An emerging pathogen in the threatened Florida gopher tortoise (Gopherus polyphemus)

The global distribution and risk prediction of Anaplasmataceae species: a systematic review and geospatial modelling analysis

BACKGROUND

The family Anaplasmataceae, reclassified under the order Rickettsiales, represents a highly complex group that poses an increasing global threat. However, their infection risk remains poorly understood. We aimed to map the diversity, distribution, and potential infection risk of Anaplasmataceae members.

METHODS

We searched PubMed, Web of Science, bioRvix, and MedRvix for published articles to extract data on the detection of Anaplasmatacea species in vectors, animals, and humans from 1910 to 2022. We mapped the richness and global distribution of identified Anaplasmatacea species. Machine learning algorithms were applied to determine the ecological and vector-related factors contributing to the occurrence of major Anaplasmatacea members and project their potential risk distributions.

FINDINGS

A total of 2605 studies meeting our inclusion criteria were used for data extraction. We identified 85 species of Anaplasmataceae family from 134 tick species, 312 wild animals, and 12 domestic animals. Anaplasma phagocytophilum had the widest range of vectors (97 species), followed by Anaplasma marginale (54 species), Anaplasma bovis (46 species), Anaplasma ovis (37 species), and Anaplasma platys (35 species). Aanaplasmaphagocytophilum was also detected in the widest range of wildlife (208 species), followed by Ehrlichia chaffeensis (46 species), Candidatus Neoehrlichia mikurensis (36 species), Ehrlichia canis (35 species), and A. bovis (32 species). In total, 52,315 human cases involving 15 Anaplasmataceae species were recorded, A. phagocytophilum and E. chaffeensis accounted for majority of human infections (66·5% and 32·4%, respectively). According to our modelling analysis, the geographic distribution of six major Anaplasmatacea species is primarily influenced by the projected habitat suitability index of tick vectors and climatic conditions. Among these, A. phagocytophilum presents the highest risk, with an estimated 3·97 billion individuals and 8·95 million km2 area potentially affected.

INTERPRETATION

The widespread distribution of Anaplasmataceae species emphasizes the need to enhance identification, surveillance, and diagnosis efforts in high-risk areas, particularly within low-income regions.

FUNDING

The National Key Research and Development Program of China (2023YFC2605603) and the Natural Science Foundation of China (82330103).

Diagnostic Clinical Pathology of Tortoises

Clinicopathologic evaluation of terrestrial tortoises is useful for health assessment and monitoring. There are specific considerations when evaluating data from these species, including sex, age, time of year/season, reproductive status, diet, captive versus wild, geographic location, methodology, and anticoagulant. The authors describe sample collection, hematology, biochemistry, and urinalysis features of terrestrial tortoises and discuss clinical relevance.

Island of misfit tortoises: waif gopher tortoise health assessment following translocation

Translocation, the intentional movement of animals from one location to another, is a common management practice for the gopher tortoise (Gopherus polyphemus). Although the inadvertent spread of pathogens is a concern with any translocation effort, waif tortoises-individuals that have been collected illegally, injured and rehabilitated or have unknown origins-are generally excluded from translocation efforts due to heightened concerns of introducing pathogens and subsequent disease to naïve populations. However, repurposing these long-lived animals for species recovery is desirable when feasible, and introducing waif tortoises may bolster small populations facing extirpation. The objective of this study was to assess the health of waif tortoises experimentally released at an isolated preserve in Aiken County, SC, USA. Our assessments included visual examination, screening for 14 pathogens using conventional or quantitative polymerase chain reaction (qPCR) and haematological evaluation. Of the 143 individuals assessed in 2017 and 2018, most individuals (76%; n = 109 of 143) had no overt clinical evidence of disease and, when observed, clinical findings were mild. In both years, we detected two known tortoise pathogens, Mycoplasma agassizii and Mycoplasma testudineum, at a prevalence of 10.2-13.9% and 0.0-0.8%, respectively. Additionally, we found emydid Mycoplasma, a bacterium commonly found in box turtles (Terrapene spp.), in a single tortoise that showed no clinical evidence of infection. The presence of nasal discharge was an important, but imperfect, predictor of Mycoplasma spp. infection in translocated tortoises. Hemogram data were comparable with wild populations. Our study is the first comprehensive effort to assess pathogen prevalence and hemogram data of waif gopher tortoises following translocation. Although caution is warranted and pathogen screening necessary, waif tortoises may be an important resource for establishing or augmenting isolated populations when potential health risks can be managed.

The Use and Limitations of the 16S rRNA Sequence for Species Classification of Anaplasma Samples

With the advent of cheaper, high-throughput sequencing technologies, the ability to survey biodiversity in previously unexplored niches and geographies has expanded massively. Within Anaplasma, a genus containing several intra-hematopoietic pathogens of medical and economic importance, at least 25 new species have been proposed since the last formal taxonomic organization. Given the obligate intracellular nature of these bacteria, none of these proposed species have been able to attain formal standing in the nomenclature per the International Code of Nomenclature of Prokaryotes rules. Many novel species’ proposals use sequence data obtained from targeted or metagenomic PCR studies of only a few genes, most commonly the 16S rRNA gene. We examined the utility of the 16S rRNA gene sequence for discriminating Anaplasma samples to the species level. We find that while the genetic diversity of the genus Anaplasma appears greater than appreciated in the last organization of the genus, caution must be used when attempting to resolve to a species descriptor from the 16S rRNA gene alone. Specifically, genomically distinct species have similar 16S rRNA gene sequences, especially when only partial amplicons of the 16S rRNA are used. Furthermore, we provide key bases that allow classification of the formally named species of Anaplasma.

Arthropods and Fire Within the Biologically Diverse Longleaf Pine Ecosystem

The longleaf pine Pinus palustris Miller (Pinales: Pinaceae) ecosystem once covered as many as 37 million hectares across the southeastern United States. Through fire suppression, development, and conversion to other plantation pines, this coverage has dwindled to fewer than 2 million hectares. A recent focus on the restoration of this ecosystem has revealed its complex and biologically diverse nature. Arthropods of the longleaf pine ecosystem are incredibly numerous and diverse-functionally and taxonomically. To provide clarity on what is known about the species and their functional roles in longleaf pine forests, we thoroughly searched the literature and found nearly 500 references. In the end, we tabulated 51 orders 477 families, 1,949 genera, and 3,032 arthropod species as having been stated in the scientific literature to occur in longleaf pine ecosystems. The body of research we drew from is rich and varied but far from comprehensive. Most work deals with land management objective associated taxa such as pests of pine, pests of-and food for-wildlife (red-cockaded woodpecker, northern bobwhite quail, gopher tortoise, pocket gopher, etc.), and pollinators of the diverse plant understory associated with longleaf pine. We explored the complex role frequent fire (critical in longleaf pine management) plays in determining the arthropod community in longleaf pine, including its importance to rare and threatened species. We examined known patterns of abundance and occurrence of key functional groups of longleaf pine-associated arthropods. Finally, we identified some critical gaps in knowledge and provide suggestions for future research into this incredibly diverse ecosystem.

Reptile vector-borne diseases of zoonotic concern

Reptile vector-borne diseases (RVBDs) of zoonotic concern are caused by bacteria, protozoa and viruses transmitted by arthropod vectors, which belong to the subclass Acarina (mites and ticks) and the order Diptera (mosquitoes, sand flies and tsetse flies). The phyletic age of reptiles since their origin in the late Carboniferous, has favored vectors and pathogens to co-evolve through millions of years, bridging to the present host-vector-pathogen interactions. The origin of vector-borne diseases is dated to the early cretaceous with Trypanosomatidae species in extinct sand flies, ancestral of modern protozoan hemoparasites of zoonotic concern (e.g., Leishmania and Trypanosoma) associated to reptiles. Bacterial RVBDs are represented by microorganisms also affecting mammals of the genera Aeromonas, Anaplasma, Borrelia, Coxiella, Ehrlichia and Rickettsia, most of them having reptilian clades. Finally, reptiles may play an important role as reservoirs of arborivuses, given the low host specificity of anthropophilic mosquitoes and sand flies. In this review, vector-borne pathogens of zoonotic concern from reptiles are discussed, as well as the interactions between reptiles, arthropod vectors and the zoonotic pathogens they may transmit.