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Collins GC, Rojas SS, Bercu ZL, Desai JP, Lindsey BD. Supervised segmentation for guiding peripheral revascularization with forward-viewing, robotically steered ultrasound guidewire. Med Phys 2023; 50:3459-3474. [PMID: 36906877 PMCID: PMC10272103 DOI: 10.1002/mp.16350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 01/19/2023] [Accepted: 02/26/2023] [Indexed: 03/13/2023] Open
Abstract
BACKGROUND Approximately 500 000 patients present with critical limb ischemia (CLI) each year in the U.S., requiring revascularization to avoid amputation. While peripheral arteries can be revascularized via minimally invasive procedures, 25% of cases with chronic total occlusions are unsuccessful due to inability to route the guidewire beyond the proximal occlusion. Improvements to guidewire navigation would lead to limb salvage in a greater number of patients. PURPOSE Integrating ultrasound imaging into the guidewire could enable direct visualization of routes for guidewire advancement. In order to navigate a robotically-steerable guidewire with integrated imaging beyond a chronic occlusion proximal to the symptomatic lesion for revascularization, acquired ultrasound images must be segmented to visualize the path for guidewire advancement. METHODS The first approach for automated segmentation of viable paths through occlusions in peripheral arteries is demonstrated in simulations and experimentally-acquired data with a forward-viewing, robotically-steered guidewire imaging system. B-mode ultrasound images formed via synthetic aperture focusing (SAF) were segmented using a supervised approach (U-net architecture). A total of 2500 simulated images were used to train the classifier to distinguish the vessel wall and occlusion from viable paths for guidewire advancement. First, the size of the synthetic aperture resulting in the highest classification performance was determined in simulations (90 test images) and compared with traditional classifiers (global thresholding, local adaptive thresholding, and hierarchical classification). Next, classification performance as a function of the diameter of the remaining lumen (0.5 to 1.5 mm) in the partially-occluded artery was tested using both simulated (60 test images at each of 7 diameters) and experimental data sets. Experimental test data sets were acquired in four 3D-printed phantoms from human anatomy and six ex vivo porcine arteries. Accuracy of classifying the path through the artery was evaluated using microcomputed tomography of phantoms and ex vivo arteries as a ground truth for comparison. RESULTS An aperture size of 3.8 mm resulted in the best-performing classification based on sensitivity and Jaccard index, with a significant increase in Jaccard index (p < 0.05) as aperture diameter increased. In comparing the performance of the supervised classifier and traditional classification strategies with simulated test data, sensitivity and F1 score for U-net were 0.95 ± 0.02 and 0.96 ± 0.01, respectively, compared to 0.83 ± 0.03 and 0.41 ± 0.13 for the best-performing conventional approach, hierarchical classification. In simulated test images, sensitivity (p < 0.05) and Jaccard index both increased with increasing artery diameter (p < 0.05). Classification of images acquired in artery phantoms with remaining lumen diameters ≥ 0.75 mm resulted in accuracies > 90%, while mean accuracy decreased to 82% when artery diameter decreased to 0.5 mm. For testing in ex vivo arteries, average binary accuracy, F1 score, Jaccard index, and sensitivity each exceeded 0.9. CONCLUSIONS Segmentation of ultrasound images of partially-occluded peripheral arteries acquired with a forward-viewing, robotically-steered guidewire system was demonstrated for the first-time using representation learning. This could represent a fast, accurate approach for guiding peripheral revascularization.
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Affiliation(s)
- Graham C. Collins
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA, 30309
| | - Stephan Strassle Rojas
- School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, USA, 30309
| | - Zachary L. Bercu
- Interventional Radiology, Emory University School of Medicine, Atlanta, GA, USA, 30308
| | - Jaydev P. Desai
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA, 30309
| | - Brooks D. Lindsey
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA, 30309
- School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, USA, 30309
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Singh P, Diwakar M, Singh S, Kumar S, Tripathi A, Shankar A. A homomorphic non-subsampled contourlet transform based ultrasound image despeckling by novel thresholding function and self-organizing map. Biocybern Biomed Eng 2022. [DOI: 10.1016/j.bbe.2022.03.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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3
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Huang Y, Xia M, Guo Y, Zhou G, Wang Y. Extraction of media adventitia and luminal intima borders by reconstructing intravascular ultrasound image sequences with vascular structural continuity. Med Phys 2021; 48:4350-4364. [PMID: 34101854 DOI: 10.1002/mp.15037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Revised: 05/06/2021] [Accepted: 05/29/2021] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Most published methods directly achieve vessel membrane border detection on cross-sectional intravascular ultrasound (IVUS) images. The vascular structural continuity that exists in entire IVUS image sequences has been overlooked. However, this continuity can have a helpful role in the delineation of vessel membrane contours. To achieve the vessel membrane segmentation more effectively through employing this continuity, a strategy, referred to as multiangle reconstruction, segmentation, and recovery (RSR), is proposed in this paper. METHODS Four main steps are contained in the multiangle-RSR: first, a combination of sampling and interpolation is employed to reconstruct long-axis-model IVUS frames, in which continuity information becomes available. Second, a clustering algorithm is conducted on long-axis-model IVUS frames to roughly extract the media-adventitia (MA) and lumen-intima (LI) boundaries. Third, the segmentation results of cross-sectional IVUS frames are recovered based on the rough results of long-axis-model IVUS frames, and an optimization process that combines downsampling, fitting and smoothing is designed to reduce the interference of bifurcation and side vessels. RESULTS Multiangle-RSR is tested on a public dataset, and the Hausdorff distance (HD), Jaccard measure (JM), and percentage of area difference (PAD) are utilized as quantitative evaluation metrics. Mean HDs of 0.34 and 0.29 mm are obtained for MA border detection and LI border detection, respectively, which decrease by 43.3% and 9.4%, respectively, compared with their counterparts in previously published approaches. Furthermore, the mean JM is 0.87 for both MA border detection and LI border detection. The mean PADs of the MA contour extraction and the LI contour extraction are 0.10 and 0.11, respectively. CONCLUSION The results indicate that the proposed strategy effectively introduces vascular structural continuity by reconstructing long-axis-model IVUS frames and achieves more precise extraction of MA and LI borders.
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Affiliation(s)
- Yi Huang
- Department of Electrical Engineering, Fudan University, Shanghai, China
| | - Menghua Xia
- Department of Electrical Engineering, Fudan University, Shanghai, China
| | - Yi Guo
- Department of Electrical Engineering, Fudan University, Shanghai, China
| | - Guohui Zhou
- Department of Electrical Engineering, Fudan University, Shanghai, China
| | - Yuanyuan Wang
- Department of Electrical Engineering, Fudan University, Shanghai, China
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Bajaj R, Huang X, Kilic Y, Ramasamy A, Jain A, Ozkor M, Tufaro V, Safi H, Erdogan E, Serruys PW, Moon J, Pugliese F, Mathur A, Torii R, Baumbach A, Dijkstra J, Zhang Q, Bourantas CV. Advanced deep learning methodology for accurate, real-time segmentation of high-resolution intravascular ultrasound images. Int J Cardiol 2021; 339:185-191. [PMID: 34153412 DOI: 10.1016/j.ijcard.2021.06.030] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 04/10/2021] [Accepted: 06/15/2021] [Indexed: 11/29/2022]
Abstract
AIMS The aim of this study is to develop and validate a deep learning (DL) methodology capable of automated and accurate segmentation of intravascular ultrasound (IVUS) image sequences in real-time. METHODS AND RESULTS IVUS segmentation was performed by two experts who manually annotated the external elastic membrane (EEM) and lumen borders in the end-diastolic frames of 197 IVUS sequences portraying the native coronary arteries of 65 patients. The IVUS sequences of 177 randomly-selected vessels were used to train and optimise a novel DL model for the segmentation of IVUS images. Validation of the developed methodology was performed in 20 vessels using the estimations of two expert analysts as the reference standard. The mean difference for the EEM, lumen and plaque area between the DL-methodology and the analysts was ≤0.23mm2 (standard deviation ≤0.85mm2), while the Hausdorff and mean distance differences for the EEM and lumen borders was ≤0.19 mm (standard deviation≤0.17 mm). The agreement between DL and experts was similar to experts' agreement (Williams Index ranges: 0.754-1.061) with similar results in frames portraying calcific plaques or side branches. CONCLUSIONS The developed DL-methodology appears accurate and capable of segmenting high-resolution real-world IVUS datasets. These features are expected to facilitate its broad adoption and enhance the applications of IVUS in clinical practice and research.
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Affiliation(s)
- Retesh Bajaj
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Cardiovascular Devices Hub, Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, UK
| | - Xingru Huang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, UK
| | - Yakup Kilic
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK
| | - Anantharaman Ramasamy
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Cardiovascular Devices Hub, Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, UK
| | - Ajay Jain
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK
| | - Mick Ozkor
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK
| | - Vincenzo Tufaro
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK
| | - Hannah Safi
- Department of Mechanical Engineering, University College London, London, UK
| | - Emrah Erdogan
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK
| | - Patrick W Serruys
- Faculty of Medicine, National Heart & Lung Institute, Imperial College London, UK
| | - James Moon
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Institute of Cardiovascular Sciences, University College London, London, UK
| | - Francesca Pugliese
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Cardiovascular Devices Hub, Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, UK
| | - Anthony Mathur
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Cardiovascular Devices Hub, Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, UK
| | - Ryo Torii
- Department of Mechanical Engineering, University College London, London, UK
| | - Andreas Baumbach
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Cardiovascular Devices Hub, Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, UK
| | - Jouke Dijkstra
- Department of Radiology, Division of Image Processing, Leiden University Medical Center, Leiden, the Netherlands
| | - Qianni Zhang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, UK
| | - Christos V Bourantas
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK; Cardiovascular Devices Hub, Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, UK; Institute of Cardiovascular Sciences, University College London, London, UK.
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Abstract
Computational cardiology is the scientific field devoted to the development of methodologies that enhance our mechanistic understanding, diagnosis and treatment of cardiovascular disease. In this regard, the field embraces the extraordinary pace of discovery in imaging, computational modeling, and cardiovascular informatics at the intersection of atherogenesis and vascular biology. This paper highlights existing methods, practices, and computational models and proposes new strategies to support a multidisciplinary effort in this space. We focus on the means by that to leverage and coalesce these multiple disciplines to advance translational science and computational cardiology. Analyzing the scientific trends and understanding the current needs we present our perspective for the future of cardiovascular treatment.
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Banchhor SK, Londhe ND, Araki T, Saba L, Radeva P, Khanna NN, Suri JS. Calcium detection, its quantification, and grayscale morphology-based risk stratification using machine learning in multimodality big data coronary and carotid scans: A review. Comput Biol Med 2018; 101:184-198. [DOI: 10.1016/j.compbiomed.2018.08.017] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 08/14/2018] [Accepted: 08/14/2018] [Indexed: 01/04/2023]
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Thin Cap Fibroatheroma Detection in Virtual Histology Images Using Geometric and Texture Features. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8091632] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Atherosclerotic plaque rupture is the most common mechanism responsible for a majority of sudden coronary deaths. The precursor lesion of plaque rupture is thought to be a thin cap fibroatheroma (TCFA), or “vulnerable plaque”. Virtual Histology-Intravascular Ultrasound (VH-IVUS) images are clinically available for visualising colour-coded coronary artery tissue. However, it has limitations in terms of providing clinically relevant information for identifying vulnerable plaque. The aim of this research is to improve the identification of TCFA using VH-IVUS images. To more accurately segment VH-IVUS images, a semi-supervised model is developed by means of hybrid K-means with Particle Swarm Optimisation (PSO) and a minimum Euclidean distance algorithm (KMPSO-mED). Another novelty of the proposed method is fusion of different geometric and informative texture features to capture the varying heterogeneity of plaque components and compute a discriminative index for TCFA plaque, while the existing research on TCFA detection has only focused on the geometric features. Three commonly used statistical texture features are extracted from VH-IVUS images: Local Binary Patterns (LBP), Grey Level Co-occurrence Matrix (GLCM), and Modified Run Length (MRL). Geometric and texture features are concatenated in order to generate complex descriptors. Finally, Back Propagation Neural Network (BPNN), kNN (K-Nearest Neighbour), and Support Vector Machine (SVM) classifiers are applied to select the best classifier for classifying plaque into TCFA and Non-TCFA. The present study proposes a fast and accurate computer-aided method for plaque type classification. The proposed method is applied to 588 VH-IVUS images obtained from 10 patients. The results prove the superiority of the proposed method, with accuracy rates of 98.61% for TCFA plaque.
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Banchhor SK, Araki T, Londhe ND, Ikeda N, Radeva P, Elbaz A, Saba L, Nicolaides A, Shafique S, Laird JR, Suri JS. Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2016; 134:237-258. [PMID: 27480747 DOI: 10.1016/j.cmpb.2016.07.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2016] [Revised: 06/13/2016] [Accepted: 07/01/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND AND OBJECTIVE Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames. METHODS This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio. RESULTS Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings. CONCLUSIONS We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance.
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Affiliation(s)
- Sumit K Banchhor
- Department of Electrical Engineering, NIT Raipur, Chhattisgarh, India
| | - Tadashi Araki
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan
| | - Narendra D Londhe
- Department of Electrical Engineering, NIT Raipur, Chhattisgarh, India
| | - Nobutaka Ikeda
- Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan
| | - Petia Radeva
- Dept. MAIA, Computer Vision Centre, Cerdanyola del Vallés, University of Barcelona, Spain
| | - Ayman Elbaz
- Department of Bioengineering, University of Louisville, USA
| | - Luca Saba
- Department of Radiology, University of Cagliari, Italy
| | - Andrew Nicolaides
- Vascular Screening and Diagnostic Centre, London, UK; Vascular Diagnostic Centre, University of Cyprus, Nicosia, Cyprus
| | - Shoaib Shafique
- CorVasc Vascular Laboratory, 8433 Harcourt Rd #100, Indianapolis, IN, USA
| | - John R Laird
- UC Davis Vascular Centre, University of California, Davis, CA, USA
| | - Jasjit S Suri
- Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA, USA; Point-of-Care Devices, Global Biomedical Technologies, Inc., Roseville, CA, USA; Department of Electrical Engineering, University of Idaho (Affl.), ID, USA.
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Zheng S, Bing-Ru L. Fast retrieval of calcification from sequential intravascular ultrasound gray-scale images. Biomed Mater Eng 2016; 27:183-95. [PMID: 27567774 DOI: 10.3233/bme-161575] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Intravascular ultrasound (IVUS)-based tissue characterization is invaluable for the computer-aided diagnosis and interventional treatment of cardiac vessel diseases. Although the analysis of raw backscattered signals allows more accurate plaque characterization than gray-scale images, its applications are limited due to its nature of electrocardiogram-gated acquisition. Images acquired by IVUS devices that do not allow the acquisition of raw signals cannot be characterized. To address these limitations, we developed a method for fast frame-by-frame retrieval and location of calcification according to the jump features of radial gray-level variation curves from sequential IVUS gray-scale images. The proposed method consists of three main steps: (1) radial gray-level variation curves are extracted from each filtered polar view, (2) sequential images are preliminarily queried according to the maximal slopes of radial gray-level variation curves, and finally, (3) key frames that include calcification are selected through checking the gray-level features of successive pixel columns in the preliminary results. Experimental results with clinically acquired in vivo data sets indicate key frames that include calcification can be retrieved with the advantages of simplicity, high efficiency, and accuracy. Recognition results correlate well with manual characterization results obtained by experienced physicians and through virtual histology.
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Affiliation(s)
- Sun Zheng
- Department of Electronic and Communication Engineering, North China Electric Power University, Baoding 071003, China
| | - Liu Bing-Ru
- Department of Electronic and Communication Engineering, North China Electric Power University, Baoding 071003, China
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Shi J, Zhou S, Liu X, Zhang Q, Lu M, Wang T. Stacked deep polynomial network based representation learning for tumor classification with small ultrasound image dataset. Neurocomputing 2016. [DOI: 10.1016/j.neucom.2016.01.074] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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11
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Araki T, Banchhor SK, Londhe ND, Ikeda N, Radeva P, Shukla D, Saba L, Balestrieri A, Nicolaides A, Shafique S, Laird JR, Suri JS. Reliable and Accurate Calcium Volume Measurement in Coronary Artery Using Intravascular Ultrasound Videos. J Med Syst 2015; 40:51. [PMID: 26643081 DOI: 10.1007/s10916-015-0407-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 11/16/2015] [Indexed: 11/29/2022]
Abstract
Quantitative assessment of calcified atherosclerotic volume within the coronary artery wall is vital for cardiac interventional procedures. The goal of this study is to automatically measure the calcium volume, given the borders of coronary vessel wall for all the frames of the intravascular ultrasound (IVUS) video. Three soft computing fuzzy classification techniques were adapted namely Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) for automated segmentation of calcium regions and volume computation. These methods were benchmarked against previously developed threshold-based method. IVUS image data sets (around 30,600 IVUS frames) from 15 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/s). Calcium mean volume for FCM, K-means, HMRF and threshold-based method were 37.84 ± 17.38 mm(3), 27.79 ± 10.94 mm(3), 46.44 ± 19.13 mm(3) and 35.92 ± 16.44 mm(3) respectively. Cross-correlation, Jaccard Index and Dice Similarity were highest between FCM and threshold-based method: 0.99, 0.92 ± 0.02 and 0.95 + 0.02 respectively. Student's t-test, z-test and Wilcoxon-test are also performed to demonstrate consistency, reliability and accuracy of the results. Given the vessel wall region, the system reliably and automatically measures the calcium volume in IVUS videos. Further, we validated our system against a trained expert using scoring: K-means showed the best performance with an accuracy of 92.80%. Out procedure and protocol is along the line with method previously published clinically.
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Affiliation(s)
- Tadashi Araki
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan
| | - Sumit K Banchhor
- Department of Electrical Engineering, NIT Raipur, Chhattisgarh, India.,Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA, USA
| | - Narendra D Londhe
- Department of Electrical Engineering, NIT Raipur, Chhattisgarh, India.,Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA, USA
| | - Nobutaka Ikeda
- Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan
| | - Petia Radeva
- Department MAIA, Computer Vision Centre, Cerdanyola del Vallés, University of Barcelona, Barcelona, Spain
| | - Devarshi Shukla
- Department of Electrical Engineering, NIT Raipur, Chhattisgarh, India.,Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA, USA
| | - Luca Saba
- Department of Radiology, University of Cagliari, Cagliari, Italy
| | | | - Andrew Nicolaides
- Vascular Screening and Diagnostic Centre, London, UK.,Vascular Diagnostic Centre, University of Cyprus, Nicosia, Cyprus
| | - Shoaib Shafique
- CorVasc Vascular Laboratory, 8433 Harcourt Rd #100, Indianapolis, IN, USA
| | - John R Laird
- UC Davis Vascular Centre, University of California, Davis, CA, USA
| | - Jasjit S Suri
- Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA, USA. .,Point-of-Care Devices, Global Biomedical Technologies, Inc., Roseville, CA, USA. .,Department of Electrical Engineering, University of Idaho (Affl.), Moscow, ID, USA.
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Athanasiou LS, Rigas GA, Sakellarios AI, Exarchos TP, Siogkas PK, Naka KK, Panetta D, Pelosi G, Vozzi F, Michalis LK, Parodi O, Fotiadis DI. Computerized methodology for micro-CT and histological data inflation using an IVUS based translation map. Comput Biol Med 2015; 65:168-76. [PMID: 25771781 DOI: 10.1016/j.compbiomed.2015.02.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Revised: 02/25/2015] [Accepted: 02/26/2015] [Indexed: 10/23/2022]
Abstract
A framework for the inflation of micro-CT and histology data using intravascular ultrasound (IVUS) images, is presented. The proposed methodology consists of three steps. In the first step the micro-CT/histological images are manually co-registered with IVUS by experts using fiducial points as landmarks. In the second step the lumen of both the micro-CT/histological images and IVUS images are automatically segmented. Finally, in the third step the micro-CT/histological images are inflated by applying a transformation method on each image. The transformation method is based on the IVUS and micro-CT/histological contour difference. In order to validate the proposed image inflation methodology, plaque areas in the inflated micro-CT and histological images are compared with the ones in the IVUS images. The proposed methodology for inflating micro-CT/histological images increases the sensitivity of plaque area matching between the inflated and the IVUS images (7% and 22% in histological and micro-CT images, respectively).
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Affiliation(s)
- Lambros S Athanasiou
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, PO Box 1186, GR 45110 Ioannina, Greece
| | - George A Rigas
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, PO Box 1186, GR 45110 Ioannina, Greece
| | - Antonis I Sakellarios
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, PO Box 1186, GR 45110 Ioannina, Greece
| | - Themis P Exarchos
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, PO Box 1186, GR 45110 Ioannina, Greece; FORTH-Institute of Molecular Biology and Biotechnology, Department of Biomedical Research, GR 45110 Ioannina, Greece
| | - Panagiotis K Siogkas
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, PO Box 1186, GR 45110 Ioannina, Greece
| | - Katerina K Naka
- Michaelidion Cardiac Center and Dept. of Cardiology, Medical School, University of Ioannina, GR 45110 Ioannina, Greece
| | - Daniele Panetta
- Institute of Clinical Physiology, National Research Council, Pisa, IT, 56124, Italy
| | - Gualtiero Pelosi
- Institute of Clinical Physiology, National Research Council, Pisa, IT, 56124, Italy
| | - Federico Vozzi
- Institute of Clinical Physiology, National Research Council, Pisa, IT, 56124, Italy
| | - Lampros K Michalis
- Michaelidion Cardiac Center and Dept. of Cardiology, Medical School, University of Ioannina, GR 45110 Ioannina, Greece
| | - Oberdan Parodi
- Institute of Clinical Physiology, National Research Council, Pisa, IT, 56124, Italy
| | - Dimitrios I Fotiadis
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, PO Box 1186, GR 45110 Ioannina, Greece; FORTH-Institute of Molecular Biology and Biotechnology, Department of Biomedical Research, GR 45110 Ioannina, Greece; Michaelidion Cardiac Center and Dept. of Cardiology, Medical School, University of Ioannina, GR 45110 Ioannina, Greece.
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Athanasiou L, Sakellarios AI, Bourantas CV, Tsirka G, Siogkas P, Exarchos TP, Naka KK, Michalis LK, Fotiadis DI. Currently available methodologies for the processing of intravascular ultrasound and optical coherence tomography images. Expert Rev Cardiovasc Ther 2015; 12:885-900. [PMID: 24949801 DOI: 10.1586/14779072.2014.922413] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Optical coherence tomography and intravascular ultrasound are the most widely used methodologies in clinical practice as they provide high resolution cross-sectional images that allow comprehensive visualization of the lumen and plaque morphology. Several methods have been developed in recent years to process the output of these imaging modalities, which allow fast, reliable and reproducible detection of the luminal borders and characterization of plaque composition. These methods have proven useful in the study of the atherosclerotic process as they have facilitated analysis of a vast amount of data. This review presents currently available intravascular ultrasound and optical coherence tomography processing methodologies for segmenting and characterizing the plaque area, highlighting their advantages and disadvantages, and discusses the future trends in intravascular imaging.
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Affiliation(s)
- Lambros Athanasiou
- Unit of Medical Technology and Intelligent Information Systems, Department of Materials Science and Engineering, University of Ioannina, GR 45110 Ioannina, Greece
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Araki T, Ikeda N, Dey N, Acharjee S, Molinari F, Saba L, Godia EC, Nicolaides A, Suri JS. Shape-based approach for coronary calcium lesion volume measurement on intravascular ultrasound imaging and its association with carotid intima-media thickness. JOURNAL OF ULTRASOUND IN MEDICINE : OFFICIAL JOURNAL OF THE AMERICAN INSTITUTE OF ULTRASOUND IN MEDICINE 2015; 34:469-482. [PMID: 25715368 DOI: 10.7863/ultra.34.3.469] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
OBJECTIVES Coronary calcification plays an important role in diagnostic classification of lesion subsets. According to histopathologic studies, vulnerable atherosclerotic plaque contains calcified deposits, and there can be considerable variation in the extent and degree of calcification. Intravascular ultrasound (IVUS) has demonstrated its role in imaging coronary arteries, thereby displaying calcium lesions. The aim of this work was to develop a fully automated system for detection, area and volume measurement, and characterization of the largest calcium deposits in coronary arteries. Furthermore, we demonstrate the correlation between the coronary calcium IVUS volume and the neurologic risk biomarker B-mode carotid intima-media thickness (IMT). METHODS Our system automatically detects the frames with calcium, identifies the largest calcium region, and performs shape-based volume measurements. The carotid IMT is measured by using AtheroEdge software (AtheroPoint, LLC) on B-mode ultrasound imaging. RESULTS Our database consists of low-contrast IVUS videos and corresponding B-mode images from 100 patients. Our experiments showed that the correlation between calcium volumes and carotid IMT was higher for the left carotid artery compared to the right carotid artery (r = 0.066 for the left carotid artery and 0.121 for the right carotid artery). We obtained 97% accuracy for automated calcium detection compared against the scoring given by our expert radiologists. Furthermore, we benchmarked shape-based volume measurement against the conventional method, which used integration of regions and showed a correlation of 84%. CONCLUSIONS Since carotid IMT is an independent prognostic factor for myocardial infarction, and calcium lesions are correlated with stroke risk, we believe that this automated system for calcium volume measurement could be useful for assessing patients' cardiovascular risk.
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Affiliation(s)
- Tadashi Araki
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Nobutaka Ikeda
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Nilanjan Dey
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Suvojit Acharjee
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Filippo Molinari
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Luca Saba
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Elisa Cuadrado Godia
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Andrew Nicolaides
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.)
| | - Jasjit S Suri
- Division of Cardiovascular Medicine, Toho University Ohashi Medical Center, Tokyo, Japan (T.A.); Division of Cardiovascular Medicine, National Center for Global Health and Medicine, Tokyo, Japan (N.I.); Point of Care Devices, Global Biomedical Technologies, Inc, Roseville, California USA (N.D., S.A., J.S.S.); Biolab, Department of Electronics, Politecnico di Torino, Torino, Italy (F.M.); Azienda Ospedaliero Universitaria di Cagliari-Polo di Monserrato, Università di Cagliari, Cagliari, Italy (L.S.); Institut Hospital del Mar d'Investigacions Mèdiques, Hospital del Mar, Barcelona, Spain (E.C.G.); Vascular Screening and Diagnostic Center, London, England (A.N.); Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus (A.N.); Diagnostic and Monitoring Division, AtheroPoint, LLC, Roseville, California USA (J.S.S.); and Department of Electrical Engineering (Affiliate), Idaho State University, Pocatello, Idaho USA (J.S.S.).
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Zhang Q, Xiao Y, Chen S, Wang C, Zheng H. Quantification of elastic heterogeneity using contourlet-based texture analysis in shear-wave elastography for breast tumor classification. ULTRASOUND IN MEDICINE & BIOLOGY 2015; 41:588-600. [PMID: 25444693 DOI: 10.1016/j.ultrasmedbio.2014.09.003] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2014] [Revised: 08/23/2014] [Accepted: 09/02/2014] [Indexed: 06/04/2023]
Abstract
Ultrasound shear-wave elastography (SWE) has become a valuable tool for diagnosis of breast tumors. The purpose of this study was to quantify the elastic heterogeneity of breast tumors in SWE by using contourlet-based texture features and evaluating their diagnostic performance for classification of benign and malignant breast tumors, with pathologic results as the gold standard. A total of 161 breast tumors in 125 women who underwent B-mode and SWE ultrasonography before biopsy were included. Five quantitative texture features in SWE images were extracted from the directional subbands after the contourlet transform, including the mean (Tmean), maximum (Tmax), median (Tmed), third quartile (Tqt), and standard deviation (Tsd) of the subbands. Diagnostic performance of the texture features and the classic features was compared using the area under the receiver operating characteristic curve (AUC) and the leave-one-out cross validation with Fisher classifier. The feature Tmean achieved the highest AUC (0.968) among all features and it yielded a sensitivity of 89.1%, a specificity of 94.3% and an accuracy of 92.5% for differentiation between benign and malignant tumors via the leave-one-out cross validation. Compared with the best classic feature, i.e., the maximum elasticity, Tmean improved the AUC, sensitivity, specificity and accuracy by 3.5%, 12.7%, 2.8% and 6.2%, respectively. The Tmed, Tqt and Tsd were also superior to the classic features in terms of the AUC and accuracy. The results demonstrated that the contourlet-based texture features captured the tumor's elastic heterogeneity and improved diagnostic performance contrasted with the classic features.
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Affiliation(s)
- Qi Zhang
- School of Communication and Information Engineering, Shanghai University, Shanghai, China.
| | - Yang Xiao
- Paul C. Lauterbur Research Center for Biomedical Imaging, Institute of Biomedical and Health Engineering, Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Shuai Chen
- School of Communication and Information Engineering, Shanghai University, Shanghai, China
| | - Congzhi Wang
- Paul C. Lauterbur Research Center for Biomedical Imaging, Institute of Biomedical and Health Engineering, Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Hairong Zheng
- Paul C. Lauterbur Research Center for Biomedical Imaging, Institute of Biomedical and Health Engineering, Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
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Gao Z, Guo W, Liu X, Huang W, Zhang H, Tan N, Hau WK, Zhang YT, Liu H. Automated detection framework of the calcified plaque with acoustic shadowing in IVUS images. PLoS One 2014; 9:e109997. [PMID: 25372784 PMCID: PMC4220935 DOI: 10.1371/journal.pone.0109997] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2014] [Accepted: 08/21/2014] [Indexed: 11/18/2022] Open
Abstract
Intravascular Ultrasound (IVUS) is one ultrasonic imaging technology to acquire vascular cross-sectional images for the visualization of the inner vessel structure. This technique has been widely used for the diagnosis and treatment of coronary artery diseases. The detection of the calcified plaque with acoustic shadowing in IVUS images plays a vital role in the quantitative analysis of atheromatous plaques. The conventional method of the calcium detection is manual drawing by the doctors. However, it is very time-consuming, and with high inter-observer and intra-observer variability between different doctors. Therefore, the computer-aided detection of the calcified plaque is highly desired. In this paper, an automated method is proposed to detect the calcified plaque with acoustic shadowing in IVUS images by the Rayleigh mixture model, the Markov random field, the graph searching method and the prior knowledge about the calcified plaque. The performance of our method was evaluated over 996 in-vivo IVUS images acquired from eight patients, and the detected calcified plaques are compared with manually detected calcified plaques by one cardiology doctor. The experimental results are quantitatively analyzed separately by three evaluation methods, the test of the sensitivity and specificity, the linear regression and the Bland-Altman analysis. The first method is used to evaluate the ability to distinguish between IVUS images with and without the calcified plaque, and the latter two methods can respectively measure the correlation and the agreement between our results and manual drawing results for locating the calcified plaque in the IVUS image. High sensitivity (94.68%) and specificity (95.82%), good correlation and agreement (>96.82% results fall within the 95% confidence interval in the Student t-test) demonstrate the effectiveness of the proposed method in the detection of the calcified plaque with acoustic shadowing in IVUS images.
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Affiliation(s)
- Zhifan Gao
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Key Laboratory of Biomedical information and Health Engineering, Chinese Academy of Sciences, Shenzhen, China
| | - Wei Guo
- Department of Cardiology, Guangdong Cardiovascular Institute, Guangdong General Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China
| | - Xin Liu
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Key Laboratory of Biomedical information and Health Engineering, Chinese Academy of Sciences, Shenzhen, China
| | - Wenhua Huang
- Institute of Clinical Anatomy, Southern Medical University, Guangzhou, China
| | - Heye Zhang
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Key Laboratory of Biomedical information and Health Engineering, Chinese Academy of Sciences, Shenzhen, China
- * E-mail: (HYZ); (NT)
| | - Ning Tan
- Department of Cardiology, Guangdong Cardiovascular Institute, Guangdong General Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China
- * E-mail: (HYZ); (NT)
| | - William Kongto Hau
- Institute of Cardiovascular Medicine and Research, LiKaShing Faculty of Medicine, University of Hong Kong, Hong Kong, China
| | - Yuan-Ting Zhang
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Key Laboratory of Biomedical information and Health Engineering, Chinese Academy of Sciences, Shenzhen, China
- The Joint Research Centre for Biomedical Engineering, Department of Electronic Engineering, Chinese University of Hong Kong, Hong Kong, China
| | - Huafeng Liu
- State Key Laboratory of Modern Optical Instrumentation, Department of Optical Engineering, Zhejiang University, Hangzhou, China
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A review of ultrasound common carotid artery image and video segmentation techniques. Med Biol Eng Comput 2014; 52:1073-93. [PMID: 25284219 DOI: 10.1007/s11517-014-1203-5] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2013] [Accepted: 09/22/2014] [Indexed: 10/24/2022]
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Zhang Q, Han H, Ji C, Yu J, Wang Y, Wang W. Gabor-based anisotropic diffusion for speckle noise reduction in medical ultrasonography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2014; 31:1273-1283. [PMID: 24977366 DOI: 10.1364/josaa.31.001273] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
In ultrasound (US), optical coherence tomography, synthetic aperture radar, and other coherent imaging systems, images are corrupted by multiplicative speckle noise that obscures image interpretation. An anisotropic diffusion (AD) method based on the Gabor transform, named Gabor-based anisotropic diffusion (GAD), is presented to suppress speckle in medical ultrasonography. First, an edge detector using the Gabor transform is proposed to capture directionality of tissue edges and discriminate edges from noise. Then the edge detector is embedded into the partial differential equation of AD to guide the diffusion process and iteratively denoise images. To enhance GAD's adaptability, parameters controlling diffusion are determined from a fully formed speckle region that is automatically detected. We evaluate the GAD on synthetic US images simulated with three models and clinical images acquired in vivo. Compared with seven existing speckle reduction methods, the GAD is superior to other methods in terms of noise reduction and detail preservation.
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Automatic lumen segmentation in IVOCT images using binary morphological reconstruction. Biomed Eng Online 2013; 12:78. [PMID: 23937790 PMCID: PMC3751056 DOI: 10.1186/1475-925x-12-78] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2013] [Accepted: 08/08/2013] [Indexed: 11/25/2022] Open
Abstract
Background Atherosclerosis causes millions of deaths, annually yielding billions in expenses round the world. Intravascular Optical Coherence Tomography (IVOCT) is a medical imaging modality, which displays high resolution images of coronary cross-section. Nonetheless, quantitative information can only be obtained with segmentation; consequently, more adequate diagnostics, therapies and interventions can be provided. Since it is a relatively new modality, many different segmentation methods, available in the literature for other modalities, could be successfully applied to IVOCT images, improving accuracies and uses. Method An automatic lumen segmentation approach, based on Wavelet Transform and Mathematical Morphology, is presented. The methodology is divided into three main parts. First, the preprocessing stage attenuates and enhances undesirable and important information, respectively. Second, in the feature extraction block, wavelet is associated with an adapted version of Otsu threshold; hence, tissue information is discriminated and binarized. Finally, binary morphological reconstruction improves the binary information and constructs the binary lumen object. Results The evaluation was carried out by segmenting 290 challenging images from human and pig coronaries, and rabbit iliac arteries; the outcomes were compared with the gold standards made by experts. The resultant accuracy was obtained: True Positive (%) = 99.29 ± 2.96, False Positive (%) = 3.69 ± 2.88, False Negative (%) = 0.71 ± 2.96, Max False Positive Distance (mm) = 0.1 ± 0.07, Max False Negative Distance (mm) = 0.06 ± 0.1. Conclusions In conclusion, by segmenting a number of IVOCT images with various features, the proposed technique showed to be robust and more accurate than published studies; in addition, the method is completely automatic, providing a new tool for IVOCT segmentation.
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Cardoso FM, Moraes MC, Furuie SS. Realistic IVUS image generation in different intraluminal pressures. ULTRASOUND IN MEDICINE & BIOLOGY 2012; 38:2104-2119. [PMID: 23062368 DOI: 10.1016/j.ultrasmedbio.2012.08.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2012] [Revised: 08/01/2012] [Accepted: 08/10/2012] [Indexed: 06/01/2023]
Abstract
Intravascular ultrasound (IVUS) phantoms are important to calibrate and evaluate many IVUS imaging processing tasks. However, phantom generation is never the primary focus of related works; hence, it cannot be well covered, and is usually based on more than one platform, which may not be accessible to investigators. Therefore, we present a framework for creating representative IVUS phantoms, for different intraluminal pressures, based on the finite element method and Field II. First, a coronary cross-section model is selected. Second, the coronary regions are identified to apply the properties. Third, the corresponding mesh is generated. Fourth, the intraluminal force is applied and the deformation computed. Finally, the speckle noise is incorporated. The framework was tested taking into account IVUS contrast, noise and strains. The outcomes are in line with related studies and expected values. Moreover, the framework toolbox is freely accessible and fully implemented in a single platform.
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Affiliation(s)
- Fernando Mitsuyama Cardoso
- Biomedical Engineering Laboratory, Department of Telecommunication and Control Engineering, School of Engineering, University of Sao Paulo, Sao Paulo, Brazil.
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Le Floc’h S, Cloutier G, Saijo Y, Finet G, Yazdani SK, Deleaval F, Rioufol G, Pettigrew RI, Ohayon J. A four-criterion selection procedure for atherosclerotic plaque elasticity reconstruction based on in vivo coronary intravascular ultrasound radial strain sequences. ULTRASOUND IN MEDICINE & BIOLOGY 2012; 38. [PMID: 23196202 PMCID: PMC4722089 DOI: 10.1016/j.ultrasmedbio.2012.07.021] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Plaque elasticity (i.e., modulogram) and morphology are good predictors of plaque vulnerability. Recently, our group developed an intravascular ultrasound (IVUS) elasticity reconstruction method which was successfully implemented in vitro using vessel phantoms. In vivo IVUS modulography, however, remains a major challenge as the motion of the heart prevents accurate strain field estimation. We therefore designed a technique to extract accurate strain fields and modulograms from recorded IVUS sequences. We identified a set of four criteria based on tissue overlapping, RF-correlation coefficient between two successive frames, performance of the elasticity reconstruction method to recover the measured radial strain, and reproducibility of the computed modulograms over the cardiac cycle. This four-criterion selection procedure (4-CSP) was successfully tested on IVUS sequences obtained in twelve patients referred for a directional coronary atherectomy intervention. This study demonstrates the potential of the IVUS modulography technique based on the proposed 4-CSP to detect vulnerable plaques in vivo.
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Affiliation(s)
- Simon Le Floc’h
- Laboratory TIMC-IMAG/DyCTiM, UJF, CNRS UMR 5525, Grenoble, France
| | - Guy Cloutier
- Laboratory of Biorheology and Medical Ultrasonics, University of Montreal Hospital Research Center (CRCHUM), Montréal, Québec, Canada
- Department of Radiology, Radio-Oncology and Nuclear Medicine, and Institute of Biomedical Engineering, University of Montreal, Montréal, Québec, Canada
| | - Yoshifumi Saijo
- Department of Biomedical Engineering, Tohoku University, Sendai, Japan
| | - Gérard Finet
- Department of Hemodynamics and Interventional Cardiology, Hospices Civiles de Lyon and Claude Bernard University Lyon 1, INSERM Unit 886, Lyon, France
| | | | - Flavien Deleaval
- Laboratory TIMC-IMAG/DyCTiM, UJF, CNRS UMR 5525, Grenoble, France
| | - Gilles Rioufol
- Department of Hemodynamics and Interventional Cardiology, Hospices Civiles de Lyon and Claude Bernard University Lyon 1, INSERM Unit 886, Lyon, France
| | - Roderic I. Pettigrew
- Laboratory of Integrative Cardiovascular Imaging Science, NIDDK, NIH, Bethesda, Maryland, USA
| | - Jacques Ohayon
- Laboratory TIMC-IMAG/DyCTiM, UJF, CNRS UMR 5525, Grenoble, France
- University of Savoie, Polytech Annecy-Chambéry, Le Bourget du Lac, France
- Address for correspondence, Professor Jacques Ohayon, Laboratory TIMC-DynaCell, UJF, CNRS UMR 5525, InS, Grenoble, France., Fax number: (33) 456 52 00 22, Telephone number: (33) 456 52 0124,
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Moraes MC, Furuie SS. Automatic coronary wall segmentation in intravascular ultrasound images using binary morphological reconstruction. ULTRASOUND IN MEDICINE & BIOLOGY 2011; 37:1486-1499. [PMID: 21741157 DOI: 10.1016/j.ultrasmedbio.2011.05.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Revised: 05/03/2011] [Accepted: 05/16/2011] [Indexed: 05/31/2023]
Abstract
Intravascular ultrasound (IVUS) image segmentation can provide more detailed vessel and plaque information, resulting in better diagnostics, evaluation and therapy planning. A novel automatic segmentation proposal is described herein; the method relies on a binary morphological object reconstruction to segment the coronary wall in IVUS images. First, a preprocessing followed by a feature extraction block are performed, allowing for the desired information to be extracted. Afterward, binary versions of the desired objects are reconstructed, and their contours are extracted to segment the image. The effectiveness is demonstrated by segmenting 1300 images, in which the outcomes had a strong correlation to their corresponding gold standard. Moreover, the results were also corroborated statistically by having as high as 92.72% and 91.9% of true positive area fraction for the lumen and media adventitia border, respectively. In addition, this approach can be adapted easily and applied to other related modalities, such as intravascular optical coherence tomography and intravascular magnetic resonance imaging.
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Affiliation(s)
- Matheus Cardoso Moraes
- Department of Telecommunication and Control, Engineering School, University of São Paulo, São Paulo SP, Brazil.
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