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For: Kolonko N, Bannach O, Aschermann K, Hu KH, Moors M, Schmitz M, Steger G, Riesner D. Transcription of potato spindle tuber viroid by RNA polymerase II starts in the left terminal loop. Virology 2006;347:392-404. [PMID: 16406459 DOI: 10.1016/j.virol.2005.11.039] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2005] [Revised: 10/21/2005] [Accepted: 11/28/2005] [Indexed: 01/09/2023]
Number Cited by Other Article(s)
1
Zhang Y, Bisaro DM, Wu J. Recent advances in viroid research. Virology 2025;604:110424. [PMID: 39889478 DOI: 10.1016/j.virol.2025.110424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 01/09/2025] [Accepted: 01/21/2025] [Indexed: 02/03/2025]
2
Wu J, Zhang Y, Nie Y, Yan F, Zirbel CL, Bisaro DM. RNA three-dimensional structure drives the sequence organization of potato spindle tuber viroid quasispecies. PLoS Pathog 2024;20:e1012142. [PMID: 38574111 PMCID: PMC11020406 DOI: 10.1371/journal.ppat.1012142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 04/16/2024] [Accepted: 03/22/2024] [Indexed: 04/06/2024]  Open
3
Ma J, Dissanayaka Mudiyanselage SD, Hao J, Wang Y. Cellular roadmaps of viroid infection. Trends Microbiol 2023;31:1179-1191. [PMID: 37349206 PMCID: PMC10592528 DOI: 10.1016/j.tim.2023.05.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 05/28/2023] [Accepted: 05/31/2023] [Indexed: 06/24/2023]
4
Ortolá B, Daròs JA. Viroids: Non-Coding Circular RNAs Able to Autonomously Replicate and Infect Higher Plants. BIOLOGY 2023;12:172. [PMID: 36829451 PMCID: PMC9952643 DOI: 10.3390/biology12020172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/16/2023] [Accepted: 01/17/2023] [Indexed: 01/24/2023]
5
Conserved Motifs and Domains in Members of Pospiviroidae. Cells 2022;11:cells11020230. [PMID: 35053346 PMCID: PMC8774013 DOI: 10.3390/cells11020230] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 12/28/2021] [Accepted: 01/07/2022] [Indexed: 12/18/2022]  Open
6
Hepatitis delta virus genome RNA synthesis initiates at position 1646 with a non-templated guanosine. J Virol 2021;96:e0201721. [PMID: 34878890 DOI: 10.1128/jvi.02017-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
7
Hataya T, Naoi T. Precisely Monomeric Linear RNAs of Viroids Belonging to Pospiviroid and Hostuviroid Genera Are Infectious Regardless of Transcription Initiation Site and 5'-Terminal Structure. Cells 2021;10:cells10112971. [PMID: 34831194 PMCID: PMC8616387 DOI: 10.3390/cells10112971] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 10/27/2021] [Accepted: 10/28/2021] [Indexed: 11/16/2022]  Open
8
Navarro B, Flores R, Serio FD. Advances in Viroid-Host Interactions. Annu Rev Virol 2021;8:305-325. [PMID: 34255541 DOI: 10.1146/annurev-virology-091919-092331] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
9
Venkataraman S, Badar U, Shoeb E, Hashim G, AbouHaidar M, Hefferon K. An Inside Look into Biological Miniatures: Molecular Mechanisms of Viroids. Int J Mol Sci 2021;22:2795. [PMID: 33801996 PMCID: PMC8001946 DOI: 10.3390/ijms22062795] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 03/01/2021] [Accepted: 03/03/2021] [Indexed: 11/17/2022]  Open
10
Wang Y. Current view and perspectives in viroid replication. Curr Opin Virol 2021;47:32-37. [PMID: 33460914 DOI: 10.1016/j.coviro.2020.12.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 12/07/2020] [Accepted: 12/11/2020] [Indexed: 11/16/2022]
11
SANO T. Progress in 50 years of viroid research-Molecular structure, pathogenicity, and host adaptation. PROCEEDINGS OF THE JAPAN ACADEMY. SERIES B, PHYSICAL AND BIOLOGICAL SCIENCES 2021;97:371-401. [PMID: 34380915 PMCID: PMC8403530 DOI: 10.2183/pjab.97.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 04/30/2021] [Indexed: 05/27/2023]
12
Evidence Supporting That RNA Polymerase II Catalyzes De Novo Transcription Using Potato Spindle Tuber Viroid Circular RNA Templates. Viruses 2020;12:v12040371. [PMID: 32230827 PMCID: PMC7232335 DOI: 10.3390/v12040371] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Revised: 03/22/2020] [Accepted: 03/25/2020] [Indexed: 12/11/2022]  Open
13
Adkar-Purushothama CR, Perreault JP. Current overview on viroid-host interactions. WILEY INTERDISCIPLINARY REVIEWS-RNA 2019;11:e1570. [PMID: 31642206 DOI: 10.1002/wrna.1570] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Revised: 09/12/2019] [Accepted: 09/17/2019] [Indexed: 01/03/2023]
14
Potato Spindle Tuber Viroid RNA-Templated Transcription: Factors and Regulation. Viruses 2018;10:v10090503. [PMID: 30227597 PMCID: PMC6164485 DOI: 10.3390/v10090503] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 09/10/2018] [Accepted: 09/15/2018] [Indexed: 12/14/2022]  Open
15
Processing of Potato Spindle Tuber Viroid RNAs in Yeast, a Nonconventional Host. J Virol 2017;91:JVI.01078-17. [PMID: 28978701 DOI: 10.1128/jvi.01078-17] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Accepted: 09/23/2017] [Indexed: 11/20/2022]  Open
16
Viability and genetic stability of potato spindle tuber viroid mutants with indels in specific loops of the rod-like secondary structure. Virus Res 2017;240:94-100. [PMID: 28778395 DOI: 10.1016/j.virusres.2017.07.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Revised: 07/27/2017] [Accepted: 07/31/2017] [Indexed: 01/17/2023]
17
Wang Y, Qu J, Ji S, Wallace AJ, Wu J, Li Y, Gopalan V, Ding B. A Land Plant-Specific Transcription Factor Directly Enhances Transcription of a Pathogenic Noncoding RNA Template by DNA-Dependent RNA Polymerase II. THE PLANT CELL 2016;28:1094-107. [PMID: 27113774 PMCID: PMC4904678 DOI: 10.1105/tpc.16.00100] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2016] [Revised: 04/11/2016] [Accepted: 04/22/2016] [Indexed: 05/05/2023]
18
Steger G, Perreault JP. Structure and Associated Biological Functions of Viroids. Adv Virus Res 2016;94:141-72. [PMID: 26997592 DOI: 10.1016/bs.aivir.2015.11.002] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
19
Rao ALN, Kalantidis K. Virus-associated small satellite RNAs and viroids display similarities in their replication strategies. Virology 2015;479-480:627-36. [PMID: 25731957 DOI: 10.1016/j.virol.2015.02.018] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Revised: 02/01/2015] [Accepted: 02/10/2015] [Indexed: 12/15/2022]
20
Flores R, Gago-Zachert S, Serra P, Sanjuán R, Elena SF. Viroids: survivors from the RNA world? Annu Rev Microbiol 2014;68:395-414. [PMID: 25002087 DOI: 10.1146/annurev-micro-091313-103416] [Citation(s) in RCA: 124] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
21
Flores R, Serra P, Minoia S, Di Serio F, Navarro B. Viroids: from genotype to phenotype just relying on RNA sequence and structural motifs. Front Microbiol 2012;3:217. [PMID: 22719735 PMCID: PMC3376415 DOI: 10.3389/fmicb.2012.00217] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Accepted: 05/28/2012] [Indexed: 11/13/2022]  Open
22
Hammann C, Steger G. Viroid-specific small RNA in plant disease. RNA Biol 2012;9:809-19. [PMID: 22617880 DOI: 10.4161/rna.19810] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
23
Bojić T, Beeharry Y, Zhang DJ, Pelchat M. Tomato RNA polymerase II interacts with the rod-like conformation of the left terminal domain of the potato spindle tuber viroid positive RNA genome. J Gen Virol 2012;93:1591-1600. [PMID: 22422064 DOI: 10.1099/vir.0.041574-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Ding B. Viroids: self-replicating, mobile, and fast-evolving noncoding regulatory RNAs. WILEY INTERDISCIPLINARY REVIEWS-RNA 2012;1:362-75. [PMID: 21956936 DOI: 10.1002/wrna.22] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
25
Hajeri S, Ramadugu C, Manjunath K, Ng J, Lee R, Vidalakis G. In vivo generated Citrus exocortis viroid progeny variants display a range of phenotypes with altered levels of replication, systemic accumulation and pathogenicity. Virology 2011;417:400-9. [DOI: 10.1016/j.virol.2011.06.013] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2011] [Revised: 06/11/2011] [Accepted: 06/13/2011] [Indexed: 02/06/2023]
26
Eiras M. VIROIDES, PEQUENOS RNAS PATOGÊNICOS CAPAZES DE REPLICAÇÃO AUTÔNOMA: MODELOS MOLECULARES PARA O ESTUDO DE INTERAÇÕES PATÓGENO-HOSPEDEIRO E EVOLUÇÃO. ARQUIVOS DO INSTITUTO BIOLÓGICO 2010. [DOI: 10.1590/1808-1657v77p7512010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
27
Wiesyk A, Candresse T, Zagorski W, Gora-Sochacka A. Use of randomly mutagenized genomic cDNA banks of potato spindle tuber viroid to screen for viable versions of the viroid genome. J Gen Virol 2010;92:457-66. [DOI: 10.1099/vir.0.026286-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
28
Teune JH, Steger G. NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome. J Nucleic Acids 2010;2010. [PMID: 20871826 PMCID: PMC2943127 DOI: 10.4061/2010/495904] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2010] [Revised: 06/10/2010] [Accepted: 06/29/2010] [Indexed: 12/18/2022]  Open
29
Viroid replication: rolling-circles, enzymes and ribozymes. Viruses 2009;1:317-34. [PMID: 21994552 PMCID: PMC3185496 DOI: 10.3390/v1020317] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2009] [Revised: 09/09/2009] [Accepted: 09/09/2009] [Indexed: 12/05/2022]  Open
30
Owens RA, Hammond RW. Viroid pathogenicity: one process, many faces. Viruses 2009;1:298-316. [PMID: 21994551 PMCID: PMC3185495 DOI: 10.3390/v1020298] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2009] [Revised: 08/31/2009] [Accepted: 09/01/2009] [Indexed: 12/28/2022]  Open
31
Ding B. The biology of viroid-host interactions. ANNUAL REVIEW OF PHYTOPATHOLOGY 2009;47:105-31. [PMID: 19400635 DOI: 10.1146/annurev-phyto-080508-081927] [Citation(s) in RCA: 189] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
32
Tsagris EM, Martínez de Alba AE, Gozmanova M, Kalantidis K. Viroids. Cell Microbiol 2008;10:2168-79. [PMID: 18764915 DOI: 10.1111/j.1462-5822.2008.01231.x] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
33
Abrahem A, Pelchat M. Formation of an RNA polymerase II preinitiation complex on an RNA promoter derived from the hepatitis delta virus RNA genome. Nucleic Acids Res 2008;36:5201-11. [PMID: 18682525 PMCID: PMC2532721 DOI: 10.1093/nar/gkn501] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
34
Motard J, Bolduc F, Thompson D, Perreault JP. The peach latent mosaic viroid replication initiation site is located at a universal position that appears to be defined by a conserved sequence. Virology 2008;373:362-75. [PMID: 18190946 DOI: 10.1016/j.virol.2007.12.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2007] [Revised: 11/18/2007] [Accepted: 12/10/2007] [Indexed: 10/22/2022]
35
Zhong X, Archual AJ, Amin AA, Ding B. A genomic map of viroid RNA motifs critical for replication and systemic trafficking. THE PLANT CELL 2008;20:35-47. [PMID: 18178767 PMCID: PMC2254921 DOI: 10.1105/tpc.107.056606] [Citation(s) in RCA: 115] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2007] [Revised: 12/12/2007] [Accepted: 12/13/2007] [Indexed: 05/19/2023]
36
Flores R, Gas ME, Molina D, Hernández C, Darós JA. Analysis of viroid replication. Methods Mol Biol 2008;451:167-83. [PMID: 18370255 DOI: 10.1007/978-1-59745-102-4_12] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
37
Owens RA. Potato spindle tuber viroid: the simplicity paradox resolved? MOLECULAR PLANT PATHOLOGY 2007;8:549-560. [PMID: 20507521 DOI: 10.1111/j.1364-3703.2007.00418.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
38
Ding B, Itaya A. Viroid: a useful model for studying the basic principles of infection and RNA biology. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2007;20:7-20. [PMID: 17249418 DOI: 10.1094/mpmi-20-0007] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
39
Daròs JA, Elena SF, Flores R. Viroids: an Ariadne's thread into the RNA labyrinth. EMBO Rep 2006;7:593-8. [PMID: 16741503 PMCID: PMC1479586 DOI: 10.1038/sj.embor.7400706] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2006] [Accepted: 04/05/2006] [Indexed: 11/09/2022]  Open
40
Greco-Stewart VS, Miron P, Abrahem A, Pelchat M. The human RNA polymerase II interacts with the terminal stem-loop regions of the hepatitis delta virus RNA genome. Virology 2006;357:68-78. [PMID: 16959288 DOI: 10.1016/j.virol.2006.08.010] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2006] [Revised: 06/02/2006] [Accepted: 08/07/2006] [Indexed: 12/28/2022]
41
Zhong X, Leontis N, Qian S, Itaya A, Qi Y, Boris-Lawrie K, Ding B. Tertiary structural and functional analyses of a viroid RNA motif by isostericity matrix and mutagenesis reveal its essential role in replication. J Virol 2006;80:8566-81. [PMID: 16912306 PMCID: PMC1563885 DOI: 10.1128/jvi.00837-06] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2006] [Accepted: 06/19/2006] [Indexed: 02/07/2023]  Open
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