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For: Zhuo L, Pan S, Li J, Fu X. Predicting miRNA-lncRNA interactions on plant datasets based on bipartite network embedding method. Methods 2022;207:97-102. [PMID: 36155251 DOI: 10.1016/j.ymeth.2022.09.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 09/04/2022] [Accepted: 09/08/2022] [Indexed: 11/15/2022]  Open
Number Cited by Other Article(s)
1
He Y, Ning Z, Zhu X, Zhang Y, Liu C, Jiang S, Yuan Z, Zhang H. Plant lncRNA-miRNA Interaction Prediction Based on Counterfactual Heterogeneous Graph Attention Network. Interdiscip Sci 2025;17:244-256. [PMID: 39382820 DOI: 10.1007/s12539-024-00652-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 08/10/2024] [Accepted: 08/12/2024] [Indexed: 10/10/2024]
2
Xie J, Xu P, Lin Y, Zheng M, Jia J, Tan X, Sun J, Zhao Q. LncRNA-miRNA interactions prediction based on meta-path similarity and Gaussian kernel similarity. J Cell Mol Med 2024;28:e18590. [PMID: 39347925 PMCID: PMC11441278 DOI: 10.1111/jcmm.18590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Revised: 07/16/2024] [Accepted: 07/24/2024] [Indexed: 10/01/2024]  Open
3
Chen Y, Du Z, Ren X, Pan C, Zhu Y, Li Z, Meng T, Yao X. mRNA-CLA: An interpretable deep learning approach for predicting mRNA subcellular localization. Methods 2024;227:17-26. [PMID: 38705502 DOI: 10.1016/j.ymeth.2024.04.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 03/30/2024] [Accepted: 04/28/2024] [Indexed: 05/07/2024]  Open
4
Wei L, Zou Q, Zeng X. Editorial: Artificial intelligence in drug discovery and development. Methods 2024;226:133-137. [PMID: 38582311 DOI: 10.1016/j.ymeth.2024.04.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2024]  Open
5
Peng L, Yang Y, Yang C, Li Z, Cheong N. HRGCNLDA: Forecasting of lncRNA-disease association based on hierarchical refinement graph convolutional neural network. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2024;21:4814-4834. [PMID: 38872515 DOI: 10.3934/mbe.2024212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2024]
6
Xu L, Fu X, Zhuo L, Zhou Z, Liao X, Tian S, Kang R, Chen Y. SGAE-MDA: Exploring the MiRNA-disease associations in herbal medicines based on semi-supervised graph autoencoder. Methods 2024;221:73-81. [PMID: 38123109 DOI: 10.1016/j.ymeth.2023.12.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 11/28/2023] [Accepted: 12/12/2023] [Indexed: 12/23/2023]  Open
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