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Fields PD, Jalinsky JR, Bankers L, McElroy KE, Sharbrough J, Higgins C, Morgan-Richards M, Boore JL, Neiman M, Logsdon JM. Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa. Genome Biol Evol 2024; 16:evae091. [PMID: 38776329 PMCID: PMC11110935 DOI: 10.1093/gbe/evae091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/22/2024] [Indexed: 05/24/2024] Open
Abstract
We have sequenced, assembled, and analyzed the nuclear and mitochondrial genomes and transcriptomes of Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa, two prosobranch snail species native to New Zealand that together span the continuum from estuary to freshwater. These two species are the closest known relatives of the freshwater species Potamopyrgus antipodarum-a model for studying the evolution of sex, host-parasite coevolution, and biological invasiveness-and thus provide key evolutionary context for understanding its unusual biology. The P. estuarinus and P. kaitunuparaoa genomes are very similar in size and overall gene content. Comparative analyses of genome content indicate that these two species harbor a near-identical set of genes involved in meiosis and sperm functions, including seven genes with meiosis-specific functions. These results are consistent with obligate sexual reproduction in these two species and provide a framework for future analyses of P. antipodarum-a species comprising both obligately sexual and obligately asexual lineages, each separately derived from a sexual ancestor. Genome-wide multigene phylogenetic analyses indicate that P. kaitunuparaoa is likely the closest relative to P. antipodarum. We nevertheless show that there has been considerable introgression between P. estuarinus and P. kaitunuparaoa. That introgression does not extend to the mitochondrial genome, which appears to serve as a barrier to hybridization between P. estuarinus and P. kaitunuparaoa. Nuclear-encoded genes whose products function in joint mitochondrial-nuclear enzyme complexes exhibit similar patterns of nonintrogression, indicating that incompatibilities between the mitochondrial and the nuclear genome may have prevented more extensive gene flow between these two species.
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Affiliation(s)
- Peter D Fields
- Department of Environmental Sciences, Zoology, University of Basel, Basel 4051, Switzerland
| | | | - Laura Bankers
- Department of Biology, University of Iowa, Iowa City, IA, USA
| | - Kyle E McElroy
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA
| | - Joel Sharbrough
- Department of Biology, New Mexico Institute of Mining and Technology, Socorro, NM, USA
| | - Chelsea Higgins
- Department of Biology, University of Iowa, Iowa City, IA, USA
| | - Mary Morgan-Richards
- School of Natural Sciences, Massey University Manawatū, Palmerston North, New Zealand
| | - Jeffrey L Boore
- Phenome Health, Seattle, WA, USA
- Institute for Systems Biology, Seattle, WA, USA
| | - Maurine Neiman
- Department of Biology, University of Iowa, Iowa City, IA, USA
- Department of Gender, Women's, and Sexuality Studies, University of Iowa, Iowa City, IA, USA
| | - John M Logsdon
- Department of Biology, University of Iowa, Iowa City, IA, USA
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Man NS, Lwin N, Sutcharit C, Panha S. Further notes on the taxonomy of the land snail family Clausiliidae Gray, 1855 (Stylommatophora, Helicina) from Myanmar with description of two new species. Zookeys 2023; 1160:1-59. [PMID: 37180819 PMCID: PMC10172936 DOI: 10.3897/zookeys.1160.98022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Accepted: 04/02/2023] [Indexed: 05/16/2023] Open
Abstract
This study presents a complete species list of the door snails inhabiting Myanmar, updated to now include 33 taxa, and provides taxonomic notes together with a re-description of the shell, radula, and genitalia for 13 species and subspecies, including Oospiraphilippiana, the type species of the genus Oospira. The snails previously treated as subspecies or synonyms of Oospiragracilior and Oospiramagna are reclassified and recognized as distinct species. The lectotype of Oospirainsignis has been clarified and an illustration of the original type specimen provided. A long-overlooked species, Oospiraandersoniana, has been collected and redescribed herein. Two new species from the limestone karsts in the Salween River Basin are introduced: Oospiraluneainopsis Man & Panha, sp. nov. and Oospirazediopsis Man & Panha, sp. nov. A synoptic view of all clausiliid taxa known from Myanmar is presented along with taxonomic information and distributional records. Photographs of the type materials for all taxa are provided for further comparison or, if unavailable, photographs of the examined specimens or the original figure from the literature.
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Affiliation(s)
- Nem Sian Man
- Animal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, ThailandChulalongkorn UniversityBangkokThailand
| | - Ngwe Lwin
- Fauna and Flora International, No. 35, 3rd Floor, Shan Gone Condo, Myay Ni Gone Market Street, Sanchaung Township, Yangon, MyanmarFauna and Flora InternationalYangonMyanmar
| | - Chirasak Sutcharit
- Animal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, ThailandChulalongkorn UniversityBangkokThailand
| | - Somsak Panha
- Animal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, ThailandChulalongkorn UniversityBangkokThailand
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Sulikowska-Drozd A, Maltz TK, Janiszewska K. Flexible embryonic shell allies large offspring size and anti-predatory protection in viviparous snails. Sci Rep 2022; 12:17881. [PMID: 36289315 PMCID: PMC9605993 DOI: 10.1038/s41598-022-22651-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 10/18/2022] [Indexed: 01/20/2023] Open
Abstract
The evolutionary conflicts between viviparous reproductive mode and skeleton shape may occur whenever the space available for embryo development or delivery is limited by hard inflexible structures of a parent (bones, shell, etc.). In tetrapods, offspring size is at odds with female locomotion efficiency, which results in obstetric selection. We suggest a similar relationship for viviparous gastropods, where spacious canal needed for embryo delivery may interfere with anti-predatory role of narrow and toothed shell aperture. We explored this hypothesis in the group of viviparous land snails (Clausiliidae, subfamily Phaedusinae), known for complex apertural barriers protecting the shell interior. Most of the shell structure modifications we recorded facilitate the delivery of embryos but simultaneously reduce the safeguard of a narrow shell opening. However, we also observed highly flexible embryonic shells that may withstand squeezing between apertural barriers during birth. We investigated the microstructure of these flexible embryonic shells, compared to the typical hard shells of clausiliid embryos, which are rigid and unpliable already in the genital tract of the parent. Our results suggest that the unusual flexibility, which is related to a low number of organomineral layers in the shell, evolved in two phylogenetically distant lineages of Phaedusinae. This adaptation reduces mechanical constraints for birth of the neonates but allows to maintain the protective function of the apertural barriers.
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Affiliation(s)
- A. Sulikowska-Drozd
- grid.10789.370000 0000 9730 2769Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Lodz, Poland
| | - T. K. Maltz
- grid.8505.80000 0001 1010 5103Museum of Natural History, University of Wrocław, Wrocław, Poland
| | - K. Janiszewska
- grid.413454.30000 0001 1958 0162Institute of Paleobiology, Polish Academy of Sciences, Warsaw, Poland
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Hwang C, Ger M, Wu S. Within‐island diversification in the land snail genus
Formosana
(Gastropoda, Clausiliidae) in Taiwan. ZOOL SCR 2022. [DOI: 10.1111/zsc.12557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Chung‐Chi Hwang
- Department of Life Sciences National University of Kaohsiung Kaohsiung Taiwan
| | - Mang‐Jye Ger
- Department of Life Sciences National University of Kaohsiung Kaohsiung Taiwan
| | - Shu‐Ping Wu
- Department of Earth and Life Sciences University of Taipei Taipei Taiwan
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Hirano T, Saito T, Viktor von Oheimb P, C M von Oheimb K, Van Do T, Yamazaki D, Kameda Y, Chiba S. Patterns of diversification of the operculate land snail genus Cyclophorus (Caenogastropoda: Cyclophoridae) on the Ryukyu Islands, Japan. Mol Phylogenet Evol 2022; 169:107407. [PMID: 35031464 DOI: 10.1016/j.ympev.2022.107407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 12/14/2021] [Accepted: 01/06/2022] [Indexed: 11/24/2022]
Abstract
The Ryukyu Islands, an island chain in southwestern Japan, originated from land masses that separated from the Eurasian continent due to the formation of sea barriers about 1.55 million years ago. In this study, we investigated the phylogenetic relationships of the operculate land snail genus Cyclophorus (Caenogastropoda: Cyclophoridae) in the Ryukyu Archipelago and surrounding regions based on DNA sequence data. According to our results, all studied Cyclophorus specimens from Japan form a monophyletic group containing eight subclades. Six of these subclades were found only on the Ryukyu Islands. On most islands of the Ryukyu Archipelago, no more than one Cyclophorus subclade was recorded, which may be due to limited ecological niche space and competition. No subclade was found to occur on both sides of the Watase Line, a regional zoogeographical boundary. Divergence times were estimated based on a time-calibrated phylogeny. We found that multiple splits among the Japanese Cyclophorus subclades predate the emergence of major sea barriers in the Ryukyu Archipelago. Vicariance due to sea barrier formation, as assumed for many other taxa from the region, was thus likely not the main driver for subclade divergence in these snails. Instead, certain geographical features might have shaped the diversification of subclades prior to sea barrier formation. Given that Cyclophorus populations were also present on islands that have never been connected to other land masses, the snails must have colonized them via oversea dispersal. As not all nominal taxa corresponded to monophyletic groups, our molecular phylogenetic approach revealed that a taxonomic revision of the Japanese Cyclophorus fauna is necessary. The eight subclades may be regarded as potential species-level groups based on COI p-distances. A canonical discriminant analysis using shell morphological data revealed slight differences among the subclades.
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Affiliation(s)
- Takahiro Hirano
- Centre of Northeast Asian Studies, Tohoku University, Sendai, Miyagi, Japan; Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan.
| | - Takumi Saito
- Department of Biology, Faculty of Science, Toho University, Funabashi, Chiba, Japan
| | - Parm Viktor von Oheimb
- Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
| | - Katharina C M von Oheimb
- Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
| | - Tu Van Do
- Department of Aquatic Ecology and Water Environment, Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Ha Noi, Vietnam; Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Ha Noi, Vietnam
| | - Daishi Yamazaki
- Centre of Northeast Asian Studies, Tohoku University, Sendai, Miyagi, Japan
| | - Yuichi Kameda
- Center for Molecular Biodiversity Research, National Museum of Nature and Science, Tokyo, Tsukuba, Ibaraki, Japan
| | - Satoshi Chiba
- Centre of Northeast Asian Studies, Tohoku University, Sendai, Miyagi, Japan; Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan
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Sulikowska-Drozd A, Hwang CC, Páll-Gergely B, Wu SP. Giants of Taiwan – comparative analysis of life history traits in four land snail species Changphaedusa horikawai, Formosana swinhoei, F. formosensis, and Formosana sp. (Stylommatophora: Clausiliidae: Phaedusinae). MOLLUSCAN RESEARCH 2021. [DOI: 10.1080/13235818.2021.1984189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Anna Sulikowska-Drozd
- Department of Invertebrate Zoology and Hydrobiology, University of Lodz, Lodz, Poland
| | - Chung-Chi Hwang
- Department of Life Sciences, National University of Kaohsiung, Kaohsiung, Taiwan
| | - Barna Páll-Gergely
- Plant Protection Institute, Centre for Agricultural Research, Budapest, Hungary
| | - Shu-Ping Wu
- Department of Earth and Life Science, University of Taipei, Taipei, Taiwan
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Sulikowska-Drozd A, Mumladze L. Life histories of three Serrulinini species (Stylommatophora: Clausiliidae) from Georgia kept under laboratory conditions. FOLIA MALACOLOGICA 2021. [DOI: 10.12657/folmal.029.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The Serrulinini, a small relict group of clausiliids occurring in coastal regions of the Black and Caspian Seas and the Caucasus, are currently classified within the Phaedusinae, however paraphyletic origin of the Serrulinini is also widely debated with Pontophaedusa funiculum (Mousson) being most phylogenetically distinct from other taxa. As life history data may have taxonomical value, we conducted long-term observations in laboratory culture to assess reproductive modes, fecundity and growth pattern of three serruline species. Caspiophaedusa perlucens (O. Boettger) and Pravispira semilamellata (Mousson) produced partly calcified eggs with regular, spiral arrangement of crystals; their juveniles hatched after 17–18 days; the generation time was long and significantly exceeded one year. P. funiculum laid heavily calcified, elongated eggs. The incubation time in P. funiculum varied depending on the humidity, with a tendency towards short embryo-retention. The generation time in P. funiculum was one year. In all the studied species, egg calcification differed from the pattern common for other oviparous Phaedusinae which produce partly calcified eggs with homogeneous distribution of crystals. The calcite crystal distribution in the egg membranes reported here for the Serrulinini suggests some potential of these characters in phylogenetic context.
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Páll-Gergely B. Pontophaedusa funiculum (Mousson, 1856) (Gastropoda: Eupulmonata: Clausiliidae) lived in captivity for 15 years. MALACOLOGICA BOHEMOSLOVACA 2021. [DOI: 10.5817/mab2021-20-35] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
A specimen of the clausiliid snail Pontophaedusa funiculum (Mousson, 1856) was kept alive for 15 years after it was collected as an adult. This is the longest direct observation of the lifespan in the Clausiliidae, and one of the longest in all land snails.
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Chen ZY, Ouyang KC. A new species and new genus of Clausiliidae (Gastropoda: Stylommatophora) from south-eastern Hubei, China. FOLIA MALACOLOGICA 2021. [DOI: 10.12657/folmal.029.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
A new clausiliid species, in a newly proposed genus, Probosciphaedusa mulini gen. et sp. nov. is described from south-eastern Hubei, China. The new taxon is characterised by having thick and cylindrical apical whorls, a strongly expanded lamella inferior and a lamella subcolumellaris that together form a tubular structure at the base of the peristome, and a dorsal lunella connected to both the upper and the lower palatal plicae. Illustrations of the new species are provided.
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