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van Wyngaard E, Blancquaert E, Nieuwoudt H, Aleixandre-Tudo JL. Infrared Spectroscopy and Chemometric Applications for the Qualitative and Quantitative Investigation of Grapevine Organs. FRONTIERS IN PLANT SCIENCE 2021; 12:723247. [PMID: 34539716 PMCID: PMC8448193 DOI: 10.3389/fpls.2021.723247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Accepted: 08/09/2021] [Indexed: 05/12/2023]
Abstract
The fourth agricultural revolution is leading us into a time of using data science as a tool to implement precision viticulture. Infrared spectroscopy provides the means for rapid and large-scale data collection to achieve this goal. The non-invasive applications of infrared spectroscopy in grapevines are still in its infancy, but recent studies have reported its feasibility. This review examines near infrared and mid infrared spectroscopy for the qualitative and quantitative investigation of intact grapevine organs. Qualitative applications, with the focus on using spectral data for categorization purposes, is discussed. The quantitative applications discussed in this review focuses on the methods associated with carbohydrates, nitrogen, and amino acids, using both invasive and non-invasive means of sample measurement. Few studies have investigated the use of infrared spectroscopy for the direct measurement of intact, fresh, and unfrozen grapevine organs such as berries or leaves, and these studies are examined in depth. The chemometric procedures associated with qualitative and quantitative infrared techniques are discussed, followed by the critical evaluation of the future prospects that could be expected in the field.
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Affiliation(s)
- Elizma van Wyngaard
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
| | - Erna Blancquaert
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
| | - Hélène Nieuwoudt
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
| | - Jose Luis Aleixandre-Tudo
- South African Grape and Wine Research Institute (SAGWRI), Department of Viticulture and Oenology, Stellenbosch University, Stellenbosch, South Africa
- Instituto de Ingeniería de Alimentos para el Desarrollo (IIAD), Departamento de Tecnologia de Alimentos, Universidad Politécnica de Valencia, Valencia, Spain
- *Correspondence: Jose Luis Aleixandre-Tudo,
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Abstract
Multivariate analysis (MA) is becoming a fundamental tool for processing in an efficient way the large amount of data collected in X-ray diffraction experiments. Multi-wedge data collections can increase the data quality in case of tiny protein crystals; in situ or operando setups allow investigating changes on powder samples occurring during repeated fast measurements; pump and probe experiments at X-ray free-electron laser (XFEL) sources supply structural characterization of fast photo-excitation processes. In all these cases, MA can facilitate the extraction of relevant information hidden in data, disclosing the possibility of automatic data processing even in absence of a priori structural knowledge. MA methods recently used in the field of X-ray diffraction are here reviewed and described, giving hints about theoretical background and possible applications. The use of MA in the framework of the modulated enhanced diffraction technique is described in detail.
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Medič-Šarić M, Maleš Ž, Šarić S, Debeljak Ž. USE OF INFORMATION THEORY AND NUMERICAL TAXONOMY METHODS FOR EVALUATING THE QUALITY OF THIN-LAYER CHROMATOGRAPHIC SEPARATIONS OF FLAVONOIDS AND PHENOLIC ACIDS OF RHAMNI CATHARTICI FRUCTUS. J LIQ CHROMATOGR R T 2006. [DOI: 10.1081/jlc-100101645] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Marica Medič-Šarić
- a Department of Pharmaceutical Chemistry, Faculty of Pharmacy & Biochemistry , University of Zagreb , A. Kovačića 1, Zagreb , 10000 , Croatia
| | - Željan Maleš
- b Department of Pharmacognosy, Faculty of Pharmacy and Biochemistry , University of Zagreb , Marulićev trg 20, Zagreb , 10000 , Croatia
| | - Slavko Šarić
- a Department of Pharmaceutical Chemistry, Faculty of Pharmacy & Biochemistry , University of Zagreb , A. Kovačića 1, Zagreb , 10000 , Croatia
| | - Željko Debeljak
- a Department of Pharmaceutical Chemistry, Faculty of Pharmacy & Biochemistry , University of Zagreb , A. Kovačića 1, Zagreb , 10000 , Croatia
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Rivier L. Criteria for the identification of compounds by liquid chromatography–mass spectrometry and liquid chromatography–multiple mass spectrometry in forensic toxicology and doping analysis. Anal Chim Acta 2003. [DOI: 10.1016/s0003-2670(03)00889-4] [Citation(s) in RCA: 142] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Cimpoiu C, Hodisan S, Toşa M, Paizs C, Majdik C, Irimie FD. Separation of N-alkyl phenothiazine sulfones by HPTLC using an optimum mobile phase. J Pharm Biomed Anal 2002; 28:385-9. [PMID: 11929683 DOI: 10.1016/s0731-7085(01)00626-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In high performance thin layer chromatography some form of optimization is necessary if complete separation of all components is required. The selection of mobile phase composition is one of the most important components of an optimization strategies. The aim of this paper is the separation of the N-alkyl phenothiazine sulfones by high performance thin layer chromatography using an optimum mobile phase system. The optimum composition of mobile phase (toluene-ethyl ether-chloroform, 30:50:20, v/v) are given by the maximum of objective function (F(obj)=10.6110).
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Affiliation(s)
- Claudia Cimpoiu
- Faculty of Chemistry and Chemical Engineering, 'Babes-Bolyai' University, 11 Arany Janos, 3400, Cluj-Napoca, Romania
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Chapter 16 ‘General unknown’ analysis. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s1567-7192(00)80071-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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Cimpoiu C, Hodisan T. Application of numerical taxonomy techniques to the choice of optimum mobile phase in high-performance thin-layer chromatography (HPTLC). J Pharm Biomed Anal 1999; 21:895-900. [PMID: 10703957 DOI: 10.1016/s0731-7085(99)00209-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A total of eight solvent systems used for the separation of 1,4-benzodiazepine mixtures were investigated. The classification of solvent systems was carried out by the numerical taxonomy technique. The selection of optimum solvent system was accomplished on the basis of information quantity and objective function. The method was found to be a rapid and efficient tool in the choice of optimum system solvent.
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Affiliation(s)
- C Cimpoiu
- Faculty of Chemistry and Chemical Engineering, Babes-Bolyai University, Cluj-Napoca, Romania
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Medić-Šarić M, Stanić G, Maleš Ž, Šarić S. Application of numerical methods to thin-layer chromatographic investigation of the main components of chamomile (Chamomilla recutita (L.) Rauschert) essential oil. J Chromatogr A 1997. [DOI: 10.1016/s0021-9673(97)00352-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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de Zeeuw RA. Drug screening in biological fluids. The need for a systematic approach. JOURNAL OF CHROMATOGRAPHY. B, BIOMEDICAL SCIENCES AND APPLICATIONS 1997; 689:71-9. [PMID: 9061483 DOI: 10.1016/s0378-4347(96)00332-5] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
In this paper the key steps towards drug screening in biological fluids are considered: (i) sample work up-isolation-concentration; (ii) differentiation-detection; (iii) identification. For (i) solid-phase extraction has very good potential; for (ii) thin-layer chromatography, gas chromatography and high-performance liquid chromatography, in combination with their respective detection modes, each have their particular advantages and disadvantages; for (iii) extensive computerized data bases are essential. It is emphasized that each step must be approached and carried out in a systematic way, not only to make sure that all substances of interest can be detected, but also for their correct identification. To this end all analytical procedures and techniques used require extensive validation of their detection and identification properties.
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Affiliation(s)
- R A de Zeeuw
- Department of Analytical Chemistry and Toxicology, University Centre for Pharmacy, Groningen, Netherlands
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Capillary zone electrophoresis and isotachophoresis: A comparison by information theory. Chromatographia 1990. [DOI: 10.1007/bf02269749] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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De Ruig W, Dijkstra G, Stephany R. Chemometric criteria for assessing the certainty of qualitative analytical methods. Anal Chim Acta 1989. [DOI: 10.1016/s0003-2670(00)84091-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Musumarra G, Scarlata G, Cirma G, Romano G, Palazzo S, Clementi S, Giulietti G. Qualitative organic analysis. I. Identification of drugs by principal components analysis of standardized thin-layer chromatographic data in four eluent systems. J Chromatogr A 1985; 350:151-68. [PMID: 4093478 DOI: 10.1016/s0021-9673(01)93515-0] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Principal component analysis of standardized RF values in four eluent systems [ethyl acetate-methanol-30% ammonia (85:10:15), cyclohexane-toluene-diethylamine (65:25:10), ethyl acetate-chloroform (50:50) and acetone, with the plate dipped in potassium hydroxide solution] provided a two-component model which accounts for 73% of the total variance. The "scores" plot allowed the restriction of the range of inquiry to a few candidates. This result is of great practical significance in analytical toxicology, especially when account is taken of the cost, the time, the analytical instrumentation and the simplicity of the calculations required by the method.
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Evaluation of isotachophoresis as a method of identification and comparison with other methods by information theory. Anal Chim Acta 1985. [DOI: 10.1016/s0003-2670(00)84961-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Musumarra G, Scarlata G, Cirma G, Romano G, Palazzo S, Clementi S, Giulietti G. Application of principal components analysis to the evaluation and selection of eluent systems for the thin-layer chromatography of basic and neutral drugs. J Chromatogr A 1984. [DOI: 10.1016/s0021-9673(01)87595-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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de Zeeuw RA. Chromatography in analytical toxicology — state of the art and future perspectives. J Pharm Biomed Anal 1983; 1:435-49. [PMID: 16867782 DOI: 10.1016/0731-7085(83)80057-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
The aims of systematic toxicological analysis are considered with respect to the principal techniques available for quantitative and qualitative purposes. The use of thin-layer (TLC), gas-liquid (GLC), capillary GLC and high-performance liquid chromatography (HPLC) is discussed, with special reference to the need for standardized systems for toxicological analysis. The selectivity of correlations presented as mean list length values, derived from archives of Kováts retention indices in GLC and of Rf-values in up to eight TLC systems, is illustrated by some typical examples. The dependence of Kováts retention indices on column packing materials and on load capacity in CGLC is discussed and the particular difficulties of comparable standard systems in HPLC are considered. Conclusions are drawn concerning the established 'workhorse' techniques, such as TLC and GLC. The need to adapt and standardize other powerful analytical methods, such as HPLC, MS and GLC-MS, is examined with regard to the requirements of toxicological analysis.
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Affiliation(s)
- R A de Zeeuw
- Department of Toxicology, State University, A. Deusinglaan 2, 9713 AW Groningen, The Netherlands
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Detaevernier MR, Hoogewijs G, Massart DL. Development of a standardized analysis strategy for basic drugs, using ion-pair extraction and high-performance liquid chromatography — II. Selection of preferred HPLC-systems. J Pharm Biomed Anal 1983; 1:331-7. [PMID: 16867803 DOI: 10.1016/0731-7085(83)80045-4] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/1983] [Indexed: 11/18/2022]
Abstract
A test set of 100 basic drugs has been chromatographed on 16 preselected HPLC-systems using four different types of stationary phase (Si-, NH2-, CN- and C18-). A numerical treatment of the chromatographic data, based on the discriminating power concept, results in the selection of two preferred HPLC systems for basic drugs. both using the CN-bonded phase. The preferred eluents are n-heptane-dichloromethane-acetonitrile-propylamine (25:50:25:0.1) and acetonitrile-water-propylamine (90:10: 0.01). The two preferred HPLC systems are adopted in a standardized analysis strategy.
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Affiliation(s)
- M R Detaevernier
- Farmaceutisch Instituut, Vrije Universiteit Brussel, Laarbeeklaan 103, B-1090 Brussel, Belgium
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A critical evaluation of quality criteria for the optimization of chromatographic multicomponent separations. Anal Chim Acta 1983. [DOI: 10.1016/s0003-2670(00)80069-0] [Citation(s) in RCA: 60] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Nagels L. Study of paper and thin-layer chromatography of phenolic substances by statistical methods. J Chromatogr A 1981. [DOI: 10.1016/s0021-9673(00)80605-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Van Marlen G, Dijkstra A, Van't Klooster HA. Calculation of the information content of retrieval procedures applied to mass spectral data bases. Anal Chim Acta 1979. [DOI: 10.1016/s0003-2670(01)83552-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Moffat AC, Owen P, Brown C. Evaluation of weighted discriminating power calculations as an aid to the selection of chromatographic systems for the analyses of drugs. J Chromatogr A 1978; 161:179-85. [PMID: 32183 DOI: 10.1016/s0021-9673(01)85225-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
In toxicological analyses some chromatographic separations are more important than others. Two weighting methods for chromatographic data are described which incorporate the importance of particular separations into discriminating power calculations. The data were abstracted from a publication on the separations of acidic drugs on thin-layer chromatographic systems. When compared with non-weighted discriminating power calculations, those obtained with the weighting procedure did not give any advantage.
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Owen P, Pendlebury A, Moffat AC. Choice of thin-layer chromatographic systems for the routine screening for acidic drugs during toxicological analyses. J Chromatogr A 1978; 161:195-203. [PMID: 32185 DOI: 10.1016/s0021-9673(01)85227-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The efficiencies of fifteen thin-layer silica gel chromatographic systems in separating commonly encountered acidic drugs are compared. The discriminating powers of the systems are measured both individually and in combination. Ethyl acetate and chloroform-methanol (9:1) are found to be the two best systems. The combination of the ethyl acetate-methanol-ammonia (85:10:5) system with either of these gives the best pair of systems. Various sequences of spray reagents are also examined.
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Dupuis PF, Dijkstra A. An information theoretical evaluation of the applicability of the ASTM infrared data base for retrieval purposes. ACTA ACUST UNITED AC 1978. [DOI: 10.1007/bf00487380] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Coding of infrared spectra for retrieval purposes by application of information theory. ACTA ACUST UNITED AC 1978. [DOI: 10.1007/bf00468549] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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De Clercq H, Massart DL, Dryon L. Evaluation and optimal combination of TLC systems for qualitative identification I: sulfonamides. J Pharm Sci 1977; 66:1269-75. [PMID: 903864 DOI: 10.1002/jps.2600660916] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A mathematical criterion for the evaluation of chromatographic analysis procedures is given by the information content as derived from Shannon's equation. This information content yields a numerical value representative of the merits of each chromatographic separation and thus allows selection of the optimal systems. In most cases, however, one analysis is not sufficient to allow the qualitative identification of the sample. Therefore, several chromatographic systems are combined. Two approaches allow the desired combination; one either calculates the information content of several procedures as one mathematical value or classifies the systems according to mutual resemblance by numerical taxonomy techniques. From the resulting groups of dissimilar systems, one optimal system can be chosen per group according to the information content. The results obtained by these mathematical procedures are illustrated with a practical example: the selection and evaluation of systems for the TLC analysis of sulfonamides.
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De Clercq H, Massart DL. Evaluation and selection of optimal solvents and solvent combinations in thin-layer chromatography. Application of the method to basic drugs. J Chromatogr A 1975; 115:1-7. [PMID: 1202054 DOI: 10.1016/s0021-9673(00)89011-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
A series of simple mathematical techniques for the evaluation of solvents and solvent combinations in thin-layer chromatography have been investigated. A strategy for the rapid selection of the optimum combination is proposed. It uses classification procedures based on calculation of the similarity between systems. The classification is carried out using a simple graph-theoretical procedure (Kruskal's algorithm) or numerical taxonomy. The selection of optimal sets from the clusters which appear in the classification is based on the information content as derived from Shannon's equation. The method has been applied to an RF data set for basic drugs. It is concluded that these methods indeed allow the selection of optimal systems or combination of systems.
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De Clercq H, Massart D. The thin-layer chromatographic separation of water-soluble food dyes on silica gel layers. J Chromatogr A 1974. [DOI: 10.1016/s0021-9673(00)83038-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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