Evaluation of advanced silica packings for the separation of biopolymers by high-performance liquid chromatography. VI. Design, chromatographic performance and application of non-porous silica-based anion exchangers

Contact-angle, ellipsometric, and spin-diffusion solid-state nuclear magnetic resonance spectroscopic investigations of copolymeric stationary phases immobilized on SiO2 surfaces

SiO2 surfaces-silica gel particles and silica wafers-were modified by covalently immobilizing three poly(ethylene-co-acrylic acid) copolymers, (-CH2CH2-)x[CH2CH/(CO2H)-]y, with different chain lengths and mass fractions of acrylic acid. 13C solid-state NMR spectroscopy on the modified silica gel particles revealed both mobile gauche and rigid trans aligned alkyl chains in the copolymers. For copolymers attached to silica wafers via a 3-aminopropyltriethoxysilane spacer molecule, ellipsometric measurements revealed a mean value of the layer thickness distribution of 6.5 and 4.3 nm, respectively, for the more acidic and the shorter copolymers with mobile alkyl chains mostly in the gauche conformation. For the longest and least acidic copolymer with more rigid trans ordered alkyl chains, however, a mean phase thickness of 10.6 nm was found. When this copolymer was immobilized via a 3-glycidoxypropyltrimethoxysilane spacer molecule we measured a mean layer thickness of 9.9 nm. A model of the surface morphology of this immobilization strategy was derived using spin-diffusion 13C NMR measurements on the corresponding modified silica. It was thereby proven that the trans and gauche-aligned alkyl chains occur in distinct domains of certain sizes on the silica surface. The surface polarity of all modified silica wafers was also investigated by measurement of contact-angle.

Capillary array high-performance liquid chromatography of nucleic acids and proteins

An array of monolithic poly(styrene/divinylbenzene) capillaries with individual column thermostats was constructed to demonstrate its utility for the separation of nucleic acids, proteins, and tryptic digests in combination with UV absorbance detection. Because of polymerization-related variation in surface area of monolithic columns, the concentration of acetonitrile required for elution of DNA fragments in denaturing HPLC may vary sufficiently to affect the degree of denaturation. Modulation of column temperature offers a convenient way to harmonize elution profiles among columns. Individual regulation of column temperature also provides the means to determine rapidly in a single parallel run the optimum temperature for resolution of biomolecules. Given the high reproducibility of separations among columns and the ease with which poly(styrene/divinylbenzene)-based stationary phases can be modified to accommodate different modes of chromatography, such arrays will find broad applicability in proteogenomics.

Poly(ethylene-co-acrylic acid) stationary phases for the separation of shape-constrained isomers

A new approach for the synthesis of long alkyl chain length stationary phases for use in reversed-phase liquid chromatography is described. Poly(ethylene-co-acrylic acid) copolymers (i.e., (-CH2CH2-)x[CH2CH(CO2H)-]y) with different levels of acrylic acid were covalently bonded to silica via glycidoxypropyl or aminopropyl linkages. 13C cross polarization magic angle spinning (CP/MAS) nuclear magnetic resonance (NMR) spectroscopy was used to characterize the new reversed-phase materials. Aspects of shape selectivity were evaluated for six different columns with Standard Reference Material (SRM) 869a, Column Selectivity Test Mixture for Liquid Chromatography. Selectivity for isomer separations was enhanced for stationary phases prepared with poly(ethylene-co-acrylic acid) containing a mass fraction of 5% acrylic acid. The relationship between alkyl conformation and chromatographic properties was studied by 13C magic angle spinning (MAS) NMR measurements, and correlations were made with the composition of the polymer. Finally, the effectiveness of this phase is demonstrated by the separation of several beta-carotene isomers.

Preparation and evaluation of packed capillary columns for the separation of nucleic acids by ion-pair reversed-phase high-performance liquid chromatography

Oligonucleotides and double stranded DNA fragments were separated in 200 microm I.D. capillary columns packed with micropellicular, octadecylated, 2.1 microm poly(styrene-divinylbenzene) particles by ion-pair reversed-phase high-performance liquid chromatography (IP-RP-HPLC). Both the length and the diameter of the connecting capillaries (150 x 0.020 mm I.D.) as well as the detection volume (3 nl) had to be kept to a minimum in order to maintain the high efficiency of this chromatographic separation system with peak widths at half height in the range of a few seconds. Three different types of frits, namely sintered silica particles, sintered octadecylsilica particles, and monolithic poly(styrene-divinylbenzene) (PS-DVB) frits were evaluated with respect to their influence on chromatographic performance. Best performance for the separation of oligonucleotides and long DNA fragments was observed with the PS-DVB frits, whereas the short DNA fragments were optimally resolved in columns terminated by octadecylsilica frits. The maximum loading capacity of 60 x 0.20 mm I.D. columns ranged from 20 fmol (7.7 ng) for a 587 base pair DNA fragment to 500 fmol (2.4 ng) for a 16-mer oligonucleotide. Lower mass- and concentration detection limits in the low femtomol and low nanomol per liter range, respectively, make capillary IP-RP-HPLC with UV absorbance detection highly attractive for the separation and characterization of minute amounts of synthetic oligonucleotides, DNA restriction fragments, and short tandem repeat sequences amplified by polymerase chain reaction.

Purification of crude DNA oligonucleotides by solid-phase extraction and reversed-phase high-performance liquid chromatography

Purification of target oligodeoxyribonucleotides from failure sequence by-products of synthesis is often required for polymerase chain reaction primers, DNA sequencing and other oligonucleotide applications. We have developed purification protocols based on a reversed-phase mechanism ("trityl on" purification) using a 96-well Oasis HLB extraction plate. The Oasis HLB sorbent combines excellent pH stability with a high loading capacity allowing for single-step purification of 0.2 microM scale synthesis. After sample loading and washing, the oligonucleotide trityl group is cleaved on the plate with 2% trifluoroacetic acid. Target DNA is eluted with acetonitrile-0.36 mM triethylamine acetate, pH 11.3 (10:90, v/v). Typical yield of purified product is 60-95%. Final purity, measured by capillary gel electrophoresis, was found to be 90% or greater. Alternatively, highly pure oligonucleotides can be obtained by a RP-HPLC "trityl off" method using an XTerra C18 column. The use of volatile triethylamine acetate buffer as an ion-pair for RP-HPLC eliminates the need for further desalting.

Micropellicular stationary phases for high-performance liquid chromatography of double-stranded DNA

The central role of nucleic acids in biosciences has effectuated the rapid development of numerous techniques for their isolation, separation, characterization and quantitation. Advances in high-performance liquid chromatography, particularly the introduction of novel microparticulate sorbents, have greatly promoted the separation and quantitation of nucleic acids. Because of their favorable mass transfer properties, micropellicular packing materials are advantageous for fast and high-resolution separations of double-stranded (ds) DNA molecules. With micropellicular packings, anion-exchange and ion-pair reversed-phase chromatography are the most popular chromatographic separation modes for dsDNA. The effective separation mechanisms in both chromatographic techniques are preferably described by nonstoichiometric models, that are founded on a better physicochemical background than traditional stoichiometric models. Column efficiency, retention characteristics, and size or sequence dependency of retention of dsDNA are greatly influenced by the chosen operational variables in both chromatographic modes. The applicability of HPLC with micropellicular stationary phases nucleic acids research includes preparative DNA fractionation, DNA restriction mapping, analysis of polymerase chain reaction products and purification of plasmid DNA.

Evaluation of Surface Plasmon Resonance (SPR) for Heparin Assay

Heparin adsorption onto polyethylene imine (PEI) films was investigated. The adsorption was followed with time-dependent surface plasmon resonance (SPR) for PEI cast on gold films, and the thickness of the adsorbed heparin was determined by fitting the angular reflection curves to Fresnel's equations. The average thickness of the PEI determined the heparin adsorption range and it was found that both heparin binding capacity and sensitivity increased with PEI thickness. At an appropriate thickness of 10 ± 2 nm, adsorption of heparin in the clinically applicable range of 0-2 U/ml caused a linear concentration dependent change in the SPR reflectivity at a fixed angle, with excellent sensitivity (0.05 U/ml). The results are compared to heparin adsorption on immobilized protamine and the surface coverage and probable heparin distribution discussed. Copyright 1997 Academic Press. Copyright 1997Academic Press

High-performance liquid chromatography of amino acids, peptides and proteins. CXXXVIII. Adsorption of horse heart cytochrome c onto a tentacle-type cation exchanger

Determination of the change in the Gibb's free energy from the adsorption isotherm associated with the interaction between a biomolecule and an ion-exchange resin is often achieved by assuming that a Langmuirean model prevails. However, the adsorption of horse heart cytochrome c onto the tentacle-type cation exchanger LiChrospher 1000 SO3- at pH 4.00 showed an isotherm of rectangular form. In this case the Langmuirean model is not applicable. In this paper, we propose an alternative way to deal with this situation, whereby the adsorption capacity of the adsorbent with a defined protein sample is studied as a function of displacing-ion concentration. The experimental conditions over defined ranges are then selected in order to relate this function to the change in the Gibb's free energy for the interaction between the protein and the ion exchanger. Additional comments about the general utility of the on-line adsorption vessel system employed to determine the adsorption isotherms are also made.

Retention behaviour of some barbituric acid derivatives on a polyethylene-coated silica column

The retention of 45 barbituric acid derivatives was determined on a polyethylene-coated silica column (PEE) in unbuffered methanol-water eluent mixtures. Each derivative showed a symmetric peak shape in each eluent and the capacity factor decreased monotonously with increasing concentration of methanol in the eluent. Stepwise regression analysis indicated that the retention of barbituric acid derivatives is mainly governed by the molecular lipopholicity and, to a lesser extent, by steric effects of the various substituents. This finding indicates that the polyethylene-coated silica behaves as a real reversed-phase chromatographic support with slightly different retention characteristics.

High-performance liquid chromatography of amino acids, peptides and proteins. CXXVI. Modelling of protein adsorption with non-porous and porous particles in a finite bath

Analytical solutions for a mathematical model describing dynamic adsorption processes of proteins onto non-porous adsorbent particles in a finite bath are presented. The model, based on the Langmuir adsorption isotherm, has been applied to experimental data obtained with affinity and ion-exchange adsorbents. The external film mass transfer resistance, as well as the rate of surface interaction between proteins and adsorbents, have been taken into account. The model has been extended to the case of adsorption onto porous particles by employing a linear driving force approximation for describing mass transfer in the pore fluid. This approach enables the derivation of an effective overall liquid phase mass transfer coefficient, permitting subsequent adaptation of the analytical solutions developed for non-porous particles. The evaluation of the effective liquid phase mass transfer coefficients is also described. Examples of a comparison between predicted and experimental dynamic adsorption curves for both dye-affinity and ion-exchange systems are presented. The application of the model for predicting the optimum operating conditions is discussed.

Comparative study of capillary zone electrophoresis and high-performance liquid chromatography in the analysis of oligonucleotides and DNA

Capillary zone electrophoresis and high-performance liquid chromatography were compared with regard to the separation of oligonucleotides and double-stranded DNA. Both anion-exchange and reversed-phase high-performance liquid chromatography on non-porous particles are considered to be superior to capillary electrophoresis in terms of speed and selectivity in the analysis of oligonucleotides up to 30 bases in length. Moreover, reversed-phase chromatography allows the simultaneous purification of detritylated oligonucleotides with recoveries > 90%. Compared with anion-exchange chromatography, there is no need for a subsequent desaltation step because the volatile buffer system can be readily evaporated. With regard to dsDNA, however, the resolving power of capillary electrophoresis cannot be matched by anion-exchange chromatography at present. Moreover, the combined use of hydroxyethylcellulose and ethidium bromide not only yielded a separation efficiency equal to that achieved by means of gel-filled capillaries but also avoids some of their limitations such as the destruction of the gel matrix at high current densities and the bias involved in electrokinetic injection.