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Pértille F, Ibelli AMG, Sharif ME, Poleti MD, Fröhlich AS, Rezaei S, Ledur MC, Jensen P, Guerrero-Bosagna C, Coutinho LL. Putative Epigenetic Biomarkers of Stress in Red Blood Cells of Chickens Reared Across Different Biomes. Front Genet 2020; 11:508809. [PMID: 33240310 PMCID: PMC7667380 DOI: 10.3389/fgene.2020.508809] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 09/11/2020] [Indexed: 12/19/2022] Open
Abstract
Production animals are constantly subjected to early adverse environmental conditions that influence the adult phenotype and produce epigenetic effects. CpG dinucleotide methylation in red blood cells (RBC) could be a useful epigenetic biomarker to identify animals subjected to chronic stress in the production environment. Here we compared a reduced fraction of the RBC methylome of chickens exposed to social isolation to non-exposed. These experiments were performed in two different locations: Brazil and Sweden. The aim was to identify stress-associated DNA methylation profiles in RBC across these populations, in spite of the variable conditions to which birds are exposed in each facility and their different lineages. Birds were increasingly exposed to a social isolation treatment, combined with food and water deprivation, at random periods of the day from weeks 1-4 after hatching. We then collected the RBC DNA from individuals and compared a reduced fraction of their methylome between the experimental groups using two bioinformatic approaches to identify differentially methylated regions (DMRs): one using fixed-size windows and another that preselected differential peaks with MACS2. Three levels of significance were used (P ≤ 0.05, P ≤ 0.005, and P ≤ 0.0005) to identify DMRs between experimental groups, which were then used for different analyses. With both of the approaches more DMRs reached the defined significance thresholds in BR individuals compared to SW. However, more DMRs had higher fold change values in SW compared to BR individuals. Interestingly, ChrZ was enriched above expectancy for the presence of DMRs. Additionally, when analyzing the locations of these DMRs in relation to the transcription starting site (TSS), we found three peaks with high DMR presence: 10 kb upstream, the TSS itself, and 20-40 kb downstream. Interestingly, these peaks had DMRs with a high presence (>50%) of specific transcription factor binding sites. Three overlapping DMRs were found between the BR and SW population using the most relaxed p-value (P ≤ 0.05). With the most stringent p-value (P ≤ 0.0005), we found 7 and 4 DMRs between treatments in the BR and SW populations, respectively. This study is the first approximation to identify epigenetic biomarkers of long-term exposure to stress in different lineages of production animals.
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Affiliation(s)
- Fábio Pértille
- Animal Biotechnology Laboratory, Animal Science and Pastures Department, University of São Paulo (USP)/"Luiz de Queiroz" College of Agriculture (ESALQ), Piracicaba, Brazil.,Avian Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden
| | | | - Maj El Sharif
- Avian Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden
| | - Mirele Daiana Poleti
- Animal Science Program, Faculty of Animal Science and Food Engineering (FZEA), University of São Paulo (USP), Pirassununga, Brazil
| | - Anna Sophie Fröhlich
- Avian Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden
| | - Shiva Rezaei
- Avian Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden
| | | | - Per Jensen
- Avian Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden
| | - Carlos Guerrero-Bosagna
- Avian Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden.,Evolutionary Biology Centre, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
| | - Luiz Lehmann Coutinho
- Animal Biotechnology Laboratory, Animal Science and Pastures Department, University of São Paulo (USP)/"Luiz de Queiroz" College of Agriculture (ESALQ), Piracicaba, Brazil
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Arakawa H. Sensorimotor developmental factors influencing the performance of laboratory rodents on learning and memory. Behav Brain Res 2019; 375:112140. [PMID: 31401145 PMCID: PMC6741784 DOI: 10.1016/j.bbr.2019.112140] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Revised: 07/31/2019] [Accepted: 08/01/2019] [Indexed: 02/08/2023]
Abstract
Behavioral studies in animal models have advanced our knowledge of brain function and the neural mechanisms of human diseases. Commonly used laboratory rodents, such as mice and rats, provide a useful tool for studying the behaviors and mechanisms associated with learning and memory processes which are cooperatively regulated by multiple underlying factors, including sensory and motor performance and emotional/defense innate components. Each of these factors shows unique ontogeny and governs the sustainment of behavioral performance in learning tasks, and thus, understanding the integrative processes of behavioral development are crucial in the accurate interpretation of the functional meaning of learning and memory behaviors expressed in commonly employed behavioral test paradigms. In this review, we will summarize the major findings in the developmental processes of rodent behavior on the basis of the emergence of fundamental components for sustaining learning and memory behaviors. Briefly, most sensory modalities (except for vision) and motor abilities are functional at the juvenile stage, in which several defensive components, including active and passive defensive strategies and risk assessment behavior, emerge. Sex differences are detectable from the juvenile stage through adulthood and are considerable factors that influence behavioral tests. The test paradigms addressed in this review include associative learning (with an emphasis on fear conditioning), spatial learning, and recognition. This basic background information will aid in accurately performing behavioral studies in laboratory rodents and will therefore contribute to reducing inappropriate interpretations of behavioral data and further advance research on learning and memory in rodent models.
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Affiliation(s)
- Hiroyuki Arakawa
- Department of Anatomy and Neurobiology, University of Maryland School of Medicine, 20 Penn St. HSF2/S251, Baltimore, MD, 21201, USA.
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Dey SK, Kamle A, Dereddi RR, Thomas SM, Thummala SR, Kumar A, Chakravarty S, Jesudasan RA. Mice With Partial Deletion of Y-Heterochromatin Exhibits Stress Vulnerability. Front Behav Neurosci 2018; 12:215. [PMID: 30297990 PMCID: PMC6160548 DOI: 10.3389/fnbeh.2018.00215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Accepted: 08/27/2018] [Indexed: 12/15/2022] Open
Abstract
The role of Y chromosome in sex determination and male fertility is well established. It is also known that infertile men are prone to psychological disturbances. Earlier studies in the laboratory identified genes expressed in testes that are putatively regulated by Y chromosome in man and mouse. With the availability of a Y-deleted mouse model, that is subfertile, we studied the effect of a partial deletion of Y-chromosomal heterochromatin on mouse behavior when compared to its wild type. The partial Y-deleted mice exhibited anxiety like phenotype under stress when different anxiety (open field test and elevated plus maze, EPM test) and depression related tests (tail suspension and force swim) were performed. The mutant mice also showed reduction in hippocampal neurogenesis and altered expression of neurogenesis markers such as Nestin, Sox2, Gfap, NeuroD1 and Dcx using quantitative real time PCR (qPCR) analysis. The genes with altered expression contained short stretches of homology to Y-derived transcripts only in their Untranslated Regions (UTRs). Our study suggests putative regulation of these genes by the Y chromosome in mouse brain altering stress related behavior.
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Affiliation(s)
- Sandeep Kumar Dey
- CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India
- CSIR-Indian Institute of Chemical Technology, Hyderabad, India
| | - Avijeet Kamle
- CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India
| | | | - Shiju M. Thomas
- CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India
| | | | - Arvind Kumar
- CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India
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Fucich EA, Morilak DA. Shock-probe Defensive Burying Test to Measure Active versus Passive Coping Style in Response to an Aversive Stimulus in Rats. Bio Protoc 2018; 8:e2998. [PMID: 30271815 DOI: 10.21769/bioprotoc.2998] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Maladaptive avoidance behaviors are seen in many stress-related psychiatric illnesses. Patients with these illnesses favor passive, avoidant coping strategies rather than adaptive, active coping strategies. Preclinically, coping strategy can be measured in rats using the shock-probe defensive burying test, wherein rats receive a shock from an electrified probe inserted into a test cage that mimics their home cage environment, and behavioral output (immobility or burying) is recorded for 15 min following the shock. Immobility in response to the perceived threat of the shock-probe, associated with elevated stress hormone levels, is regarded as a passive, maladaptive coping strategy. In opposition, burying the probe is associated with lower stress hormone levels and is considered an active, adaptive coping style. In rats, chronic stress induces a shift from active to passive coping in this test (i.e., proportionally less burying and more immobility), modeling the avoidant symptoms presented across many stress-related psychiatric illnesses. The stress-induced shifts in coping style and overall behavioral reactivity to the shock-probe provide a unique and well-validated measure of not only an anxiety-like behavioral response but also coping strategy selection in rat models of psychiatric illness.
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Affiliation(s)
- Elizabeth A Fucich
- Department of Pharmacology, Center for Biomedical Neuroscience, University of Texas Health Science Center, San Antonio, Texas, USA
| | - David A Morilak
- Department of Pharmacology, Center for Biomedical Neuroscience, University of Texas Health Science Center, San Antonio, Texas, USA
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Cryan JF, Sweeney FF. The age of anxiety: role of animal models of anxiolytic action in drug discovery. Br J Pharmacol 2011; 164:1129-61. [PMID: 21545412 PMCID: PMC3229755 DOI: 10.1111/j.1476-5381.2011.01362.x] [Citation(s) in RCA: 189] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2011] [Revised: 02/24/2011] [Accepted: 03/02/2011] [Indexed: 12/12/2022] Open
Abstract
Anxiety disorders are common, serious and a growing health problem worldwide. However, the causative factors, aetiology and underlying mechanisms of anxiety disorders, as for most psychiatric disorders, remain relatively poorly understood. Animal models are an important aid in giving insight into the aetiology, neurobiology and, ultimately, the therapy of human anxiety disorders. The approach, however, is challenged with a number of complexities. In particular, the heterogeneous nature of anxiety disorders in humans coupled with the associated multifaceted and descriptive diagnostic criteria, creates challenges in both animal modelling and in clinical research. In this paper, we describe some of the more widely used approaches for assessing the anxiolytic activity of known and potential therapeutic agents. These include ethological, conflict-based, hyponeophagia, vocalization-based, physiological and cognitive-based paradigms. Developments in the characterization of translational models are also summarized, as are the challenges facing researchers in their drug discovery efforts in developing new anxiolytic drugs, not least the ever-shifting clinical conceptualization of anxiety disorders. In conclusion, to date, although animal models of anxiety have relatively good validity, anxiolytic drugs with novel mechanisms have been slow to emerge. It is clear that a better alignment of the interactions between basic and clinical scientists is needed if this is to change.
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Affiliation(s)
- John F Cryan
- Neuropharmacology Research Group, School of Pharmacy, University College Cork, Cork, Ireland.
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Olvera-Hernández S, Fernández-Guasti A. Sex differences in the burying behavior test in middle-aged rats: effects of diazepam. Pharmacol Biochem Behav 2011; 99:532-9. [PMID: 21672548 DOI: 10.1016/j.pbb.2011.05.030] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/24/2011] [Revised: 05/25/2011] [Accepted: 05/29/2011] [Indexed: 11/28/2022]
Abstract
The full behavioral profile displayed during the burying behavior test was studied in middle aged (11-14 months) males, females with irregular estrous cycles, and females in persistent diestrus, with and without diazepam (0.5-2.0mg/kg). Ambulation and motor coordination were also tested to discern behavioral changes from general motor alterations. Without diazepam treatment, middle-aged males showed longer burying behavior latencies, more prod explorations and less freezing than both groups of females. Untreated middle aged males also showed less cumulative burying and more immobility compared to females with irregular cycles. None of the parameters showed any difference between the female groups. Diazepam (0.5 and 1.0mg/kg) increased burying behavior latency in females, but had no effect on any parameter in middle aged males. However, a higher dose (2.0mg/kg) of diazepam increased immobility, freezing and the number of prod shocks and decreased prod explorations and groomings, but impaired motor coordination in males. In contrast with young males and females, diazepam at any dose reduced cumulative burying. Data are discussed on the bases of (1) sex and age differences in burying behavior and on (2) the anxiolytic-like action of diazepam and its side effects.
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Affiliation(s)
- Sandra Olvera-Hernández
- Centro de Investigación y Estudios Avanzados, Departamento de Farmacobiología, Calzada de los Tenorios 235, Colonia Granjas Coapa, México 14330 D.F., Mexico
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Abstract
Anxiety disorders are a growing health problem world-wide. However, the causative factors, etiology, and underlying mechanisms of anxiety disorders, as for most psychiatric disorders, remain relatively poorly understood. The current status of clinical research indicates that anxiety traits and anxiety disorder in man have a genetic component, and therefore genetic modeling in animals is a logical approach to gain a greater insight into their neurobiology. However, it is also clear that the nature of these genetic contributions is highly complex. Moreover, the success of this approach is largely contingent upon the utility of available behavioral paradigms for modeling anxiety-related behaviors in mice. Animal genetic models provide a unique and comprehensive methodological tool to aid discovery into the etiology, neurobiology, and ultimately, the therapy of human anxiety disorders. The approach, however, is challenged with a number of complexities. In particular, the heterogeneous nature of anxiety disorders in man coupled with the associated multifaceted and descriptive diagnostic criteria, create challenges in both animal modeling and in clinical research. In this article, we describe some of the powerful modem genetic techniques that are uniquely amenable to the laboratory mouse and thus provide a strategy for approaching some of these challenges. Moreover, we focus on recent advances which have highlighted the relative contribution of genetic modeling in animals to the understanding of underlying neurobiology and genetic basis of anxiety disorders.
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Hakvoort Schwerdtfeger RM, Menard JL. The lateral hypothalamus and anterior hypothalamic nucleus differentially contribute to rats' defensive responses in the elevated plus-maze and shock-probe burying tests. Physiol Behav 2008; 93:697-705. [DOI: 10.1016/j.physbeh.2007.11.011] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2007] [Revised: 10/04/2007] [Accepted: 11/12/2007] [Indexed: 10/22/2022]
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Arakawa H. Ontogenetic interaction between social relationships and defensive burying behavior in the rat. Physiol Behav 2007; 90:751-9. [PMID: 17291551 DOI: 10.1016/j.physbeh.2006.12.015] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2006] [Revised: 12/12/2006] [Accepted: 12/22/2006] [Indexed: 11/26/2022]
Abstract
The present experiments clarify sexual and social relationship factors related to the development of defensive burying behavior in rats. Rats were raised in isolation, or in a variety of pairs differing in sex, age or familiarity during the juvenile and post-juvenile period. In Experiment 1, decreased burying behavior was found in both male and female rats during the juvenile stage when they were reared in isolation, or with an adult female, or for males reared with a same-age female. In Experiment 2, female rats isolated during the juvenile stage who were reared after the juvenile stage with a same-sex, non-isolated rat, showed as much burying behavior as rats reared with a littermate; this was not found for male rats. When both male and female rats isolated during the juvenile stage were reared with each other after isolation, they maintained reduced burying behavior in adulthood. These sex differences in the effect of different social groupings are likely due to the differences in social relationships during the juvenile and after puberty, when social dominance relationships emerge in male rats. In Experiment 3, the effects of social dominance relationships on burying behavior were investigated in male rats. Subordination increased the freezing tendency as a passive defense, while social tension accompanied with rearing with an adult male produced decreased burying behavior as a proactive defense. These findings suggest that affiliative relationships involving playful contacts activate and maintain burying behavior, but familiarity is not a significant factor, while dominance relationships modulate the patterns of burying behavior.
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Affiliation(s)
- Hiroyuki Arakawa
- Department of Psychology, Graduate School of Letters, Nagoya University, Japan.
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Arakawa H. Ontogeny of sex differences in defensive burying behavior in rats: effect of social isolation. Aggress Behav 2007; 33:38-47. [PMID: 17441004 DOI: 10.1002/ab.20165] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The aim of the present experiments was to clarify sex differences in socio-developmental factors that affected defense behavior in rats. Sex differences in the defensive burying behavior of rats, and related social factors, were explored in three developmental stages: juvenile, puberty, and adult; 30, 50, and 80 days of age, respectively. The duration of burying, digging into bedding material, stretch-attend postures, and crouch/freezing were measured in a shock-prod test. For males, the duration of burying was longer in the juvenile and pubertal stages than in adulthood. For females, no age differences in the duration of burying were found. Males showed longer burying durations than females in both the juvenile and pubertal stages. For both sexes, the highest duration of digging was found in the juvenile stage, and females showed longer durations of digging than males. Both male and female rats isolated during the juvenile stage, from 26 to 40 days of age, showed smaller durations of burying behavior compared to pair-reared rats. This effect of juvenile isolation was maintained among both adult males and females even when they were returned to pair rearing after isolation. Isolation during adulthood, from 66 to 80 days of age, increased burying behavior in males, but decreased it in females. The durations of digging, stretch-attend postures, and crouch/freezing were not affected by isolation. The decrease in defensive burying and its increase resulting from isolation in adult male rats, suggest that the emergence of adult-like social relationships in males suppressed the duration of burying. Male and female rats isolated during the juvenile stage maintained lower levels of burying, suggesting that social experience as juveniles is important for the emergence of defensive burying behavior.
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Affiliation(s)
- Hiroyuki Arakawa
- School of Psychology, Chukyo University, Yagoto-Honcho, Showa-Ku, Nagoya, Japan.
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De Boer SF, Koolhaas JM. Defensive burying in rodents: ethology, neurobiology and psychopharmacology. Eur J Pharmacol 2003; 463:145-61. [PMID: 12600707 DOI: 10.1016/s0014-2999(03)01278-0] [Citation(s) in RCA: 276] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Defensive burying refers to the typical rodent behavior of displacing bedding material with vigorous treading-like movements of their forepaws and shoveling movements of their heads directed towards a variety of noxious stimuli that pose a near and immediate threat, such as a wall-mounted electrified shock-prod. Since its introduction 25 years ago by Pinel and Treit [J. Comp. Physiol. Psychol. 92 (1978) 708], defensive (shock-prod) burying has been the focus of a considerable amount of research effort delineating the methodology/ethology, psychopharmacology and neurobiology of this robust and species-specific active avoidance or coping response. The present review gives a summary of this research with special reference to the behavioral (face and construct) and pharmacological (predictive) validity of the shock-prod burying test as an animal model for human anxiety. Emphasis is also placed on some recent modifications of the paradigm that may increase its utility and reliability as to individual differences in expressed emotional coping responses and sensitivity to pharmacological treatments. Overall, the behavioral and physiological responses displayed in the shock-prod paradigm are expressions of normal and functionally adaptive coping patterns and the extremes of either active (i.e., burying) or passive (i.e., freezing) forms of responding in this test cannot simply be regarded as inappropriate, maladaptive or pathological. For this reason, the shock-prod paradigm is not an animal model for anxiety disorder or for any other psychiatric disease, but instead possesses a high degree of face and construct validity for normal and functionally adaptive human fear and anxious apprehension. However, the apparent good pharmacological validation (predictive validity) of this test reinforces the view that normal and pathological anxiety involves, at least partly, common neurobiological substrates. Therefore, this paradigm is not only suitable for screening potential anxiolytic properties of new drugs, but seems to be especially valuable for unraveling the neural circuitry and neurochemical mechanisms underlying the generation of active and passive coping responses as different expressions of anxiety.
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Affiliation(s)
- Sietse F De Boer
- Department of Animal Physiology, Biological Center, University of Groningen, P.O. Box 14, 9750 AA Haren, The Netherlands.
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Spink AJ, Tegelenbosch RA, Buma MO, Noldus LP. The EthoVision video tracking system--a tool for behavioral phenotyping of transgenic mice. Physiol Behav 2001; 73:731-44. [PMID: 11566207 DOI: 10.1016/s0031-9384(01)00530-3] [Citation(s) in RCA: 165] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
Video tracking systems enable behavior to be studied in a reliable and consistent way, and over longer time periods than if they are manually recorded. The system takes an analog video signal, digitizes each frame, and analyses the resultant pixels to determine the location of the tracked animals (as well as other data). Calculations are performed on a series of frames to derive a set of quantitative descriptors of the animal's movement. EthoVision (from Noldus Information Technology) is a specific example of such a system, and its functionality that is particularly relevant to transgenic mice studies is described. Key practical aspects of using the EthoVision system are also outlined, including tips about lighting, marking animals, the arena size, and sample rate. Four case studies are presented, illustrating various aspects of the system: (1) The effects of disabling the Munc 18-1 gene were clearly shown using the straightforward measure of how long the mice took to enter a zone in an open field. (2) Differences in exploratory behavior between short and long attack latency mice strains were quantified by measuring the time spent in inner and outer zones of an open field. (3) Mice with hypomorphic CREB alleles were shown to perform less well in a water maze, but this was only clear when a range of different variables were calculated from their tracks. (4) Mice with the trkB receptor knocked out in the forebrain also performed poorly in a water maze, and it was immediately apparent from examining plots of the tracks that this was due to thigmotaxis. Some of the latest technological developments and possible future directions for video tracking systems are briefly discussed.
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Affiliation(s)
- A J Spink
- Noldus Information Technology B.V., P.O. Box 268, 6700 AG Wageningen, The Netherlands.
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