Mathematical modelling and simulation of catechol production from benzoate using resting cells of Pseudomonas putida

A study of the flexibility of the carbon catabolic pathways of extremophilic P. aeruginosa san ai exposed to benzoate versus glucose as sole carbon sources by multi omics analytical platform

Polyextremophilic, hydrocarbonoclastic Pseudomonas aeruginosa san ai can survive under extreme environmental challenges in the presence of a variety of pollutants such as organic solvents and hydrocarbons, particularly aromatics, heavy metals, and high pH. To date, the metabolic plasticity of the extremophilic P. aeruginosa, has not been sufficiently studied in regard to the effect of changing carbon sources. Therefore, the present study explores the carbon metabolic pathways of polyextremophilic P. aeruginosa san ai grown on sodium benzoate versus glucose and its potential for aromatic degradation. P. aeruginosa san ai removed/metabolised nearly 430 mg/L of benzoate for 48 h, demonstrating a high capacity for aromatic degradation. Comparative functional proteomics, targeted metabolomics and genomics analytical approaches were employed to study the carbon metabolism of the P. aeruginosa san ai. Functional proteomic study of selected enzymes participating in the β-ketoadipate and the Entner-Doudoroff pathways revealed a metabolic reconfiguration induced by benzoate compared to glucose. Metabolome analysis implied the existence of both catechol and protocatechuate branches of the β-ketoadipate pathway. Enzymatic study of benzoate grown cultures confirmed the activity of the ortho- catechol branch of the β-ketoadipate pathway. Even high concentrations of benzoate did not show increased stress protein synthesis, testifying to its extremophilic nature capable of surviving in harsh conditions. This ability of Pseudomonas aeruginosa san ai to efficiently degrade benzoate can provide a wide range of use of this strain in environmental and agricultural application.

Complete Genome Sequence and Biodegradation Characteristics of Benzoic Acid-Degrading Bacterium Pseudomonas sp. SCB32

Allelochemicals are metabolites produced by living organisms that have a detrimental effect on other species when released into the environment. These chemicals play critical roles in the problems associated with crop replanting. Benzoic acid is a representative allelochemical found in root exudates and rhizosphere soil of crops and inhibits crop growth. The bioremediation of allelochemicals by microorganisms is an efficient decontamination process. In this research, a bacterial strain capable of degrading benzoic acid as the sole carbon source was isolated. The genome of the strain was sequenced, and biodegradation characteristics and metabolic mechanisms were examined. Strain SCB32 was identified as Pseudomonas sp. based on 16S rRNA gene analysis coupled with physiological and biochemical analyses. The degradation rate of 800 mg L-1 benzoic acid by strain SCB32 was greater than 97.0% in 24 h. The complete genome of strain SCB32 was 6.3 Mbp with a GC content of 64.6% and 5960 coding genes. Potential benzoic acid degradation genes were found by comparison to the KEGG database. Some key intermediate metabolites of benzoic acid, such as catechol, were detected by gas chromatography-mass spectrometry. The biodegradation pathway of benzoic acid, the ortho pathway, is proposed for strain SCB32 based on combined data from genome annotation and mass spectrometry. Moreover, the benzoic acid degradation products from strain SCB32 were essentially nontoxic to lettuce seedlings, while seeds in the benzoic acid-treated group showed significant inhibition of germination. This indicates a possible application of strain SCB32 in the bioremediation of benzoic acid contamination in agricultural environments.

Mutagenesis of catA from Pseudomonas sp. B3-1 to Enhance Catechol Accumulation

Pseudomonas sp. B3-1, a wild strain isolated from soil, produced catechol from benzoate and accumulated it outside the cell. catA, a gene encodes a catechol 1,2-dioxygenase in the bioconversion of aromatic compounds, plays the central role in accumulation of catechol. Mutant of the catA gene is disrupted without blocking the transcription of downstream genes was analyzed. The result showed that the mutant had less catechol 1, 2-dioxygenase activity, only 1/3 of strain B3-1’s. The mutant produced a maximal amount of catechol (1.22 mg/ml) from 4 mg/ml of sodium benzoate after growing for 48 h. The conversion rate of benzoate to catechol was 51.5% on a molar basis.

Benzoate and salicylate degradation by Halomonas campisalis, an alkaliphilic and moderately halophilic microorganism

Alkaliphiles and halophiles have considerable potential to treat organic pollutants in industrial wastewaters having high pH and salinity. As model aromatic compounds, benzoate and salicylate at concentrations up to 380 mg/L were degraded as carbon and energy sources by Halomonas campisalis, an alkaliphile and moderate halophile. Aerobic batch experiments were performed at 50 and 100g/L NaCl and pH 9. Detected metabolites, catechol and cis, cis-muconate, indicated that H. campisalis used the ortho degradation pathway for both substrates. For benzoate concentrations up to 1600 mg/L, the intermediate 2-hydroxymuconic semialdehyde (2HMSA), characteristic of the meta pathway, was not detected. Improved understanding and characterization of these degradation processes in high pH, high salt systems may lead to improved application of haloalkaliphiles for industrial wastewater treatment.