Metal Complexes of Stable Carbenes**Dedicated to Professor Henri Brunner on the occasion of his 65th birthday

A density functional theory study on silver and bis-silver complexes with lighter tetrylene: are silver and bis-silver carbenes candidates for SARS-CoV-2 inhibition? Insight from molecular docking simulation

Ribavirin and remdesivir have been preclinically reported as potential drugs for the treatment of SARS-CoV-2 infection, while light silver tetrylene complexes (NHEPh-AgCl and (NHEPh-AgCl)2 with E = C, Si, and Ge) have gained significant interest due to their promising applicability on the cytological scale. Firstly, the structures and bonding states of silver-tetrylene complexes (NHE-Ag) and bis-silver-tetrylene complexes (NHE-Ag-bis) were investigated using density functional theory (DFT) at the BP86 level with the def2-SVP and def2-TZVPP basis sets. Secondly, the inhibitory capabilities of the carbene complexes (NHC-Ag and NHC-Ag-bis) and the two potential drugs (ribavirin and remdesivir) on human-protein ACE2 and SARS-CoV-2 protease PDB6LU7 were evaluated using molecular docking simulation. The carbene ligand NHC bonds in a head-on configuration with AgCl and (AgCl)2, whereas, the other NHE (E = Si and Ge) tetrylene ligands bond in a side-on mode to the metal fragments. The bond dissociation energy (BDE) of the NHE-Ag bond in the complex families follows the order of NHC-Ag > NHSi-Ag > NHGe-Ag and NHSi-Ag-bis > NHGe-Ag-bis > NHC-Ag-bis. The natural bond orbital analysis implies that the [NHEPh→AgCl] and [(NHEPh)2→(AgCl)2] donations are derived mainly from the σ- and π-contributions of the ligands. The docking results indicate that both the ACE2 and PDB6LU7 proteins are strongly inhibited by silver-carbene NHC-Ag, bis-silver-carbene NHC-Ag-bis, ribavirin, and remdesivir with the docking score energy values varying from -17.5 to -16.5 kcal mol-1 and -16.9 to -16.6 kcal mol-1, respectively. The root-mean-square deviation values were recorded to be less than 2 Å in all the calculated systems. Thus, the present study suggests that silver-carbene NHC-Ag and bis-silver-carbene NHC-Ag-bis complexes are potential candidates to inhibit ACE2 and PDB6LU7, and thus potentially conducive to prevent infection caused by the SARS-CoV-2 virus.

Highly Chemoselective and Enantioselective Synthesis of 3,4-2H-Pyrindin-2-ones by an NHC-Catalyzed [3 + 3] Cyclization

A highly chemoselective and enantioselective cyclization of γ-chloroenals and ketimines has been developed to synthesize enantiopure 3,4-2H-pyrindin-2-ones as major products. It is proposed that the intermediate enone IV reacted with an enamine to proceed with a [3 + 3] cyclization, thereby affording 3,4-2H-pyrindin-2-ones as major products. Interestingly, the addition of LiCl promoted the formation of the enamine and accelerated the [3 + 3] cyclization. In contrast, the [4 + 2] cycloaddition reaction between the intermediate vinyl enolate VIII and an imine offered 5,6-2H-pyrindin-2-ones as minor products. This protocol represents the exceptional potential of N-heterocyclic carbene (NHC) catalytic reactions in accessing biologically active 3,4-2H-pyrindin-2-one derivatives in good yield with high chemoselectivities and excellent enantiomeric purities.

Local Energy Decomposition of Open-Shell Molecular Systems in the Domain-Based Local Pair Natural Orbital Coupled Cluster Framework

Local energy decomposition (LED) analysis decomposes the interaction energy between two fragments calculated at the domain-based local pair natural orbital CCSD(T) (DLPNO-CCSD(T)) level of theory into a series of chemically meaningful contributions and has found widespread applications in the study of noncovalent interactions. Herein, an extension of this scheme that allows for the analysis of interaction energies of open-shell molecular systems calculated at the UHF-DLPNO-CCSD(T) level is presented. The new scheme is illustrated through applications to the CH₂···X (X = He, Ne, Ar, Kr, and water) and heme···CO interactions in the low-lying singlet and triplet spin states. The results are used to discuss the mechanism that governs the change in the singlet–triplet energy gap of methylene and heme upon adduct formation.

Chiral NHC-catalyzed 1,3-dipolar [3 + 2] cycloaddition of azomethine imines with α-chloroaldehydes for the synthesis of bicyclic pyrazolidinones

An NHC-catalyzed [3 + 2] cycloaddition reaction of azomethine imines and α-chloroaldehydes was developed for the synthesis of chiral bicyclic pyrazolidinone derivatives.

NHC-catalyzed [4+2] cycloaddition reactions for the synthesis of 3′-spirocyclic oxindoles via a C–F bond cleavage protocol

A chiral NHC-catalyzed cycloaddition of γ-fluoroenals is developed. The nucleophilic γ-carbon generated via C–F bond cleavage undergoes highly enantioselective cycloaddition (up to >99% ee) to isatins and provides 3′-spirocyclic oxindoles in good yields (up to 91%).

Metal complexes with di(N-heterocyclic carbene) ligands bearing a rigid ortho-, meta or para-phenylene bridge

Ag(i) complexes with diNHC ligands are efficient transmetalating agents towards transition metals.

Imidazol-2-ylidene-N′-phenylureate ligands in alkali and alkaline earth metal coordination spheres – heterocubane core to polymeric structural motif formation

Synthetic and structural details of imidazol-2-ylidene-N′-phenylureate ligand supported two potassium complexes with a hetero-cubane K₄O₄ core and a polymeric structure, along with a mixed metal Ca–K complex are presented.

Cooperative catalysis of N-heterocyclic carbene and Brønsted acid for a highly enantioselective route to unprotected spiro-indoline-pyrans

A chiral cooperative catalysis of NHC and Brønsted acid for a formal [4+2] reaction of unprotected isatins and enals was developed for the direct synthesis of unprotected spiro[indoline-3,2′-pyran]-2,6′(3′H)-diones in good to excellent yields (up to 95%) with high enantioselectivities (up to >93% ee).

Tuning effects for some cyclic aromatic carbenes bearing remote amino groups

Yamamoto and co-workers synthesized two cyclic aromatic carbenes with remote amino groups. Here we theoretically studied related compounds to explore tuning effects on the singlet-triplet splitting by variations of functional groups. For the Yamamoto compound, the lowest singlet state lies 15.7 kcal/mol below the lowest triplet. The singlet-triplet separation is reduced by ∼7 kcal/mol when the dimethylamino groups are replaced by H. In one set of carbenes, when X = O, we substitute S, Se, Te, SO, SeO, and TeO for X; the resulting ΔE(S-T) predictions are 9.9, 7.3, 3.9, 4.3, 2.3, and -0.1 kcal/mol, respectively. A different set of X fragments yields triplet electronic ground states with ΔE(S-T) values of -8.6 (X = BH), -6.8 (X = AlH), -7.2 (X = GaH), -7.5 (X = InH), and -7.0 kcal/mol (X = TlH). We also predicted ΔE(S-T) with N(CH3)2 replaced by PH2, AsH2, SbH2, BiH2, BH2, CH3, OH, and F. Of all the molecules considered, that with N(CH3)2 replaced with BH2 and X = BH most favors the triplet state, lying 13.7 kcal/mol below the singlet. Finally, we have relocated the N(CH3)2 and NH2 groups from the (3, 6) positions to the (4, 5), (2, 7), and (1, 8) terminal ring positions, with very interesting results.

Heterometallic complexes, tandem catalysis and catalytic cooperativity

N-heterocyclic carbene-based heterometallic complexes have emerged as useful multicatalysts for tandem reactions.

Bis-N-heterocyclic carbene (NHC) stabilized η6-arene iron(0) complexes: synthesis, structure, reactivity, and catalytic activity

Reaction of FeCl2 with the chelating bis-N-heterocyclic carbene (NHC) bis-(N-Dipp-imidazole-2-ylidene)methylene (abbreviated {((Dipp)C:)2CH2}) (Dipp = 2,6-di-isopropylphenyl) affords the complex [FeCl2{((Dipp)C:)2CH2}] (1) in high yield. Reduction of complex 1 with excess KC8 with a 10-fold molar excess of PMe3 affords the Fe(II) complex [FeH{((Dipp)C:)2CH2}(PMe3)(η(2)-PMe2CH2)] (2) as a mixture of three stereoisomers. Complex 2, the first example of any iron(II) complex bearing mutually an NHC and PMe3 ligand, is likely obtained from the in situ, reductively generated 16 VE Fe(0) complex, [Fe{((Dipp)C:)2CH2}(PMe3)2] (2'), following intramolecular C-H activation of one of the phosphorus-bound CH3 groups. Complex 2 is unstable in aromatic solvents and forms, via a novel synthetic transformation involving intramolecular reductive elimination and concomitant PMe3 elimination, the Fe (0) arene complex [Fe{((Dipp)C:)2CH2}(η(6)-C6D6)] (4-d6) in C6D6. Complex 4-d6 represents the first example of an NHC stabilized iron (0) arene complex. The transformation from 2 to 4-d6 can be accelerated at higher temperature and at 60 °C forms immediately. Alternatively, the reduction of 1 in the presence of toluene or benzene affords the complexes [Fe{((Dipp)C:)2CH2}(η(6)-C7H8)] (3) and [Fe{((Dipp)C:)2CH2}(η(6)-C6H6)] (4), selectively and in good yields. DFT calculations characterizing the bonding situation in 3 and 4 reveal similar energies of the HOMO and LUMO orbitals, with the LUMO orbital of both complexes located on the Dipp rings of the bis-NHC. The HOMO orbital reflects a π-back-bonding interaction between the Fe(0) center and the chelating NHC ligand, while the HOMO-1 is associated with the arene interaction with the Fe(0) site. The calculations do not suggest any noninnocence of the coordinated arene in either complex. Moreover, the (57)Fe Mössbauer spectrum of 4 at 80K exhibits parameters (δ = 0.43 mm·s(-1); ΔEQ = 1.37 mm·s(-1)) which are consistent with a five-coordinate Fe(0) system, rendering 3 and 4 the first examples of well-defined authentic Fe(0)-η(6)-arene complexes of the type [Fe(η(6)-arene)L2] (L = η(1 or 2) neutral ligand, mono or bidentate). Some reactivitiy studies of 3 are also reported: The reaction of 3 with excess CO selectively yields the five-coordinate piano-stool complex [Fe{((Dipp)C:)2CH2}(CO)3] (6) in near quantitative yields, while the reaction of complex 3 with C6D6 under heating affords by toluene elimination 4-d6. The catalytic ability of 4 was also investigated with respect to amide reduction to amines, for a variety of substrates using Ph2SiH2 as a hydride source. In all cases good to excellent yields to the corresponding amines were obtained. The use of 4 as a precatalyst represents the first example of a well-defined Fe(0) complex to effect this catalytic process.

A theoretical study on the hydrogen adducts of diamidocarbenes and diaminocarbenes

The hybrid-meta GGA DFT functional M06-2X was used to examine the potential of N,N'-diamidocarbenes for use as hydrogen storage materials. We previously discovered that borylene, which is isoelectronic with an Arduengo-type carbene, was a suitable candidate for a hydrogen storage material. We compared the capabilities of N,N'-diamidocarbenes and N-heterocyclic carbenes as hydrogen storage materials. The results indicate that diamidocarbenes are not suitable hydrogen storage materials because the removal of H₂ is more endothermic for diamidocarbenes than for diaminocarbenes.

A comparison of diamino- and diamidocarbenes toward dimerization

In this study, we compare the dimerization of N,N'-diamidocarbene with that of N-heterocyclic carbene (NHC). Less interaction occurred between the filled lone pair of nitrogen and the unfilled lone pair of the carbenic center for a N,N'-diamdiocarbene than did in a saturated NHC because of the resonance between the lone pair of nitrogen and a carbonyl group. Therefore, a N,N'-diamidocarbene exhibits less singlet-triplet splitting. The less singlet-triplet splitting in a heterocyclic carbene containing nitrogen, the more exothermic the dimerization, which is consistent with the conclusion of Thiel et al. (Chem Phys Lett 217:11-16, 1994).

Computational comparison of the kinetic stabilities of diamino- and diamidocarbenes in the 1,2-H shift reaction

In this study, we performed several DFT, MP2, and BD(T) calculations on the 1,2-H shift reactions of two diaminocarbenes (1, 2) and a diamidocarbene (3) using the Gaussian 09 program. In Gaussian 09, the BD(T) method keyword requests a Brueckner doubles calculation including a perturbative triples contribution. Although N-heterocyclic carbenes (NHC) are typically known for their exceptional σ-donor abilities, recent studies have indicated that π-interactions also play a role in the bonding between NHCs and transition metals or BX3 (X = H, OH, NH2, CH3, CN, NC, F, Cl, and Br) (Nemcsok et al. Organomet 23:3640-3646, 2004, Esrafili. J Mol Model 18:2003-2011, 2012). In order to study the importance of π-interactions between carbenes and transition metals, Hobbs and co-workers (Hobbs et al. New J Chem 34:1295-1308, 2010) focused on the synthesis of NHCs with reduced-energy lowest unoccupied molecular orbitals. By introducing an oxalamide moiety into the heterocyclic backbone, they found the resulting carbene possessed higher electrophilicity than usual NHCs. According to our results, the N,N'-diamidocarbene should be more stable than the diaminocarbenes with respect to the 1,2-H shift reaction.