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For: Zhou R, Schlierf M, Ha T. Force-fluorescence spectroscopy at the single-molecule level. Methods Enzymol 2010;475:405-26. [PMID: 20627166 DOI: 10.1016/s0076-6879(10)75016-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Number Cited by Other Article(s)
1
Halma MTJ, Tuszynski JA, Wuite GJL. Optical tweezers for drug discovery. Drug Discov Today 2023;28:103443. [PMID: 36396117 DOI: 10.1016/j.drudis.2022.103443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 09/23/2022] [Accepted: 11/09/2022] [Indexed: 11/16/2022]
2
Maffeo C, Chou HY, Aksimentiev A. Single-molecule biophysics experiments in silico: Toward a physical model of a replisome. iScience 2022;25:104264. [PMID: 35521518 PMCID: PMC9062759 DOI: 10.1016/j.isci.2022.104264] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 03/23/2022] [Accepted: 04/12/2022] [Indexed: 11/25/2022]  Open
3
Mitra J, Ha T. Streamlining effects of extra telomeric repeat on telomeric DNA folding revealed by fluorescence-force spectroscopy. Nucleic Acids Res 2020;47:11044-11056. [PMID: 31617570 PMCID: PMC6868435 DOI: 10.1093/nar/gkz906] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Revised: 09/29/2019] [Accepted: 10/02/2019] [Indexed: 01/26/2023]  Open
4
Mitra J, Ha T. Nanomechanics and co-transcriptional folding of Spinach and Mango. Nat Commun 2019;10:4318. [PMID: 31541108 PMCID: PMC6754394 DOI: 10.1038/s41467-019-12299-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/03/2019] [Indexed: 11/24/2022]  Open
5
Extreme mechanical diversity of human telomeric DNA revealed by fluorescence-force spectroscopy. Proc Natl Acad Sci U S A 2019;116:8350-8359. [PMID: 30944218 DOI: 10.1073/pnas.1815162116] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
6
Single-molecule fluorescence imaging: Generating insights into molecular interactions in virology. J Biosci 2018. [DOI: 10.1007/s12038-018-9769-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
7
Lin CT, Ha T. Probing Single Helicase Dynamics on Long Nucleic Acids Through Fluorescence-Force Measurement. Methods Mol Biol 2017;1486:295-316. [PMID: 27844433 DOI: 10.1007/978-1-4939-6421-5_11] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
8
Kemmerich FE, Swoboda M, Kauert DJ, Grieb MS, Hahn S, Schwarz FW, Seidel R, Schlierf M. Simultaneous Single-Molecule Force and Fluorescence Sampling of DNA Nanostructure Conformations Using Magnetic Tweezers. NANO LETTERS 2016;16:381-6. [PMID: 26632021 DOI: 10.1021/acs.nanolett.5b03956] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
9
Shon MJ, Cohen AE. Nano-mechanical measurements of protein-DNA interactions with a silicon nitride pulley. Nucleic Acids Res 2015;44:e7. [PMID: 26338777 PMCID: PMC4705685 DOI: 10.1093/nar/gkv866] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Accepted: 08/15/2015] [Indexed: 01/13/2023]  Open
10
Ngo TTM, Zhang Q, Zhou R, Yodh JG, Ha T. Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility. Cell 2015;160:1135-44. [PMID: 25768909 PMCID: PMC4409768 DOI: 10.1016/j.cell.2015.02.001] [Citation(s) in RCA: 239] [Impact Index Per Article: 23.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2014] [Revised: 10/07/2014] [Accepted: 01/17/2015] [Indexed: 02/06/2023]
11
Chen Y, Radford SE, Brockwell DJ. Force-induced remodelling of proteins and their complexes. Curr Opin Struct Biol 2015;30:89-99. [PMID: 25710390 PMCID: PMC4499843 DOI: 10.1016/j.sbi.2015.02.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2014] [Revised: 01/29/2015] [Accepted: 02/02/2015] [Indexed: 11/23/2022]
12
Stratmann SA, van Oijen AM. DNA replication at the single-molecule level. Chem Soc Rev 2014;43:1201-20. [PMID: 24395040 DOI: 10.1039/c3cs60391a] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
13
Savinov A, Perez CF, Block SM. Single-molecule studies of riboswitch folding. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2014;1839:1030-1045. [PMID: 24727093 DOI: 10.1016/j.bbagrm.2014.04.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Revised: 03/27/2014] [Accepted: 04/03/2014] [Indexed: 10/25/2022]
14
Brucale M, Schuler B, Samorì B. Single-molecule studies of intrinsically disordered proteins. Chem Rev 2014;114:3281-317. [PMID: 24432838 DOI: 10.1021/cr400297g] [Citation(s) in RCA: 117] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
15
Scholl ZN, Li Q, Marszalek PE. Single molecule mechanical manipulation for studying biological properties of proteins, DNA , and sugars. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2013;6:211-29. [DOI: 10.1002/wnan.1253] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Revised: 10/10/2013] [Accepted: 10/17/2013] [Indexed: 11/07/2022]
16
Lee S, Hohng S. An Optical Trap Combined with Three-Color FRET. J Am Chem Soc 2013;135:18260-3. [DOI: 10.1021/ja408767p] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
17
Zhou R, Ha T. Single-molecule analysis of SSB dynamics on single-stranded DNA. Methods Mol Biol 2013;922:85-100. [PMID: 22976178 DOI: 10.1007/978-1-62703-032-8_5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
18
Kim H, Ha T. Single-molecule nanometry for biological physics. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2013;76:016601. [PMID: 23249673 PMCID: PMC3549428 DOI: 10.1088/0034-4885/76/1/016601] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
19
Zoldák G, Rief M. Force as a single molecule probe of multidimensional protein energy landscapes. Curr Opin Struct Biol 2012;23:48-57. [PMID: 23279960 DOI: 10.1016/j.sbi.2012.11.007] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Revised: 11/26/2012] [Accepted: 11/26/2012] [Indexed: 01/06/2023]
20
Lee JY, Wang F, Fazio T, Wind S, Greene EC. Measuring intermolecular rupture forces with a combined TIRF-optical trap microscope and DNA curtains. Biochem Biophys Res Commun 2012;426:565-70. [PMID: 22967893 DOI: 10.1016/j.bbrc.2012.08.127] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Accepted: 08/27/2012] [Indexed: 01/18/2023]
21
Tinoco I, Gonzalez RL. Biological mechanisms, one molecule at a time. Genes Dev 2011;25:1205-31. [PMID: 21685361 PMCID: PMC3127425 DOI: 10.1101/gad.2050011] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
22
Bienert R, Zimmermann B, Rombach‐Riegraf V, Gräber P. Time‐Dependent FRET with Single Enzymes: Domain Motions and Catalysis in H + ‐ATP Synthases. Chemphyschem 2011;12:510-7. [DOI: 10.1002/cphc.201000921] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2010] [Indexed: 11/10/2022]
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