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Ristinmaa AS, Tafur Rangel A, Idström A, Valenzuela S, Kerkhoven EJ, Pope PB, Hasani M, Larsbrink J. Resin acids play key roles in shaping microbial communities during degradation of spruce bark. Nat Commun 2023; 14:8171. [PMID: 38071207 PMCID: PMC10710418 DOI: 10.1038/s41467-023-43867-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 11/22/2023] [Indexed: 12/18/2023] Open
Abstract
The bark is the outermost defense of trees against microbial attack, largely thanks to toxicity and prevalence of extractive compounds. Nevertheless, bark decomposes in nature, though by which species and mechanisms remains unknown. Here, we have followed the development of microbial enrichments growing on spruce bark over six months, by monitoring both chemical changes in the material and performing community and metagenomic analyses. Carbohydrate metabolism was unexpectedly limited, and instead a key activity was metabolism of extractives. Resin acid degradation was principally linked to community diversification with specific bacteria revealed to dominate the process. Metagenome-guided isolation facilitated the recovery of the dominant enrichment strain in pure culture, which represents a new species (Pseudomonas abieticivorans sp. nov.), that can grow on resin acids as a sole carbon source. Our results illuminate key stages in degradation of an abundant renewable resource, and how defensive extractive compounds have major roles in shaping microbiomes.
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Affiliation(s)
| | - Albert Tafur Rangel
- Department of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden
- Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Kgs, Lyngby, Denmark
| | - Alexander Idström
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden
| | - Sebastian Valenzuela
- Department of Medical Biochemistry and Cell Biology, University of Gothenburg, SE-405 30, Gothenburg, Sweden
| | - Eduard J Kerkhoven
- Department of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden
- Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Kgs, Lyngby, Denmark
| | - Phillip B Pope
- Faculty of Biosciences, Norwegian University of Life Sciences, NO-1433, Ås, Norway
- Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, NO-1433, Ås, Norway
| | - Merima Hasani
- Department of Chemistry and Chemical Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden
- Wallenberg Wood Science Center, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden
| | - Johan Larsbrink
- Department of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.
- Wallenberg Wood Science Center, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.
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2
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Chubachi T, Oguchi T, Morita K, Hayashi N, Kikuchi A, Watanabe KN. A statistical modeling approach based on the small-scale field trial and meteorological data for preliminary prediction of the impact of low temperature on Eucalyptus globulus trees. Sci Rep 2023; 13:10138. [PMID: 37349519 PMCID: PMC10287712 DOI: 10.1038/s41598-023-37038-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 06/14/2023] [Indexed: 06/24/2023] Open
Abstract
Eucalyptus trees are important for industrial forestry plantations because of their high potential for biomass production, but their susceptibility to damage at low temperatures restricts their plantation areas. In this study, a 6-year field trial of Eucalyptus globulus was conducted in Tsukuba, Japan, which is the northernmost reach of Eucalyptus plantations, and leaf damage was quantitatively monitored over four of six winters. Leaf photosynthetic quantum yield (QY) levels, an indicator of cold stress-induced damage, fluctuated synchronously with temperature in the winters. We performed a maximum likelihood estimation of the regression model explaining leaf QY using training data subsets for the first 3 years. The resulting model explained QY by the number of days when the daily maximum temperature was below 9.5 °C over approximately the last 7 weeks as an explanatory variable. The correlation coefficient and coefficient of determination of prediction by the model between the predicted and observed values were 0.84 and 0.70, respectively. The model was then used to perform two kinds of simulations. Geographical simulations of potential Eucalyptus plantation areas using global meteorological data from more than 5,000 locations around the world successfully predicted an area that generally agreed with the global Eucalyptus plantation distribution reported previously. Another simulation based on meteorological data of the past 70 years suggested that global warming will increase the potential E. globulus plantation area in Japan approximately 1.5-fold over the next 70 years. These results suggest that the model developed herein would be applicable to preliminary predictions of E. globulus cold damage in the field.
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Affiliation(s)
- Tomoaki Chubachi
- Graduate School of Science and Technology, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
| | - Taichi Oguchi
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan.
- Tsukuba Plant Innovation Research Center, University of Tsukuba, Gene Research Center Bldg., Ten-Nodai, Tsukuba, Ibaraki, 305-8572, Japan.
| | - Kazuki Morita
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
| | - Nanami Hayashi
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
| | - Akira Kikuchi
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
- Tsukuba Plant Innovation Research Center, University of Tsukuba, Gene Research Center Bldg., Ten-Nodai, Tsukuba, Ibaraki, 305-8572, Japan
| | - Kazuo N Watanabe
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
- Tsukuba Plant Innovation Research Center, University of Tsukuba, Gene Research Center Bldg., Ten-Nodai, Tsukuba, Ibaraki, 305-8572, Japan
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3
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Kumar A, Yadav M, Tiruneh W. Debarking, pitch removal and retting: Role of microbes and their enzymes. PHYSICAL SCIENCES REVIEWS 2020. [DOI: 10.1515/psr-2019-0048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractMicrobial enzymes are green and clean alternatives for several processes in the pulp and paper industry. Enzyme treatment decreases the energy requirement and minimizes the wood losses during drum debarking. Lipophilic wood extractives are known as pitch. Pitch deposition adversely affects the pulp quality and increases equipment maintenance and operating costs during paper manufacturing. Several chemical additives have been used to remove pitch deposits. Natural seasoning of wood is used to minimize pitch content in wood, but it has some disadvantages including yield losses and decreased brightness. Controlled seasoning with white-rot fungi or albino strains of sapstain fungi is an effective tool for degradation and removal of wood extractives. Enzymes including lipase, laccase, sterol esterase, and lipooxygenase have also been used to minimize pitch-related problems. Enzymatic retting has been proved an eco-friendly and economical solution for chemical degumming and traditional retting.
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Affiliation(s)
- Amit Kumar
- Department of Biotechnology, College of Natural and Computational Sciences, Debre Markos University, Debre Markos, Ethiopia
| | - Mukesh Yadav
- Department of Biotechnology, Maharishi Markandeshwar (Deemed to be University), Mullana, Ambala, India
| | - Workinesh Tiruneh
- Department of Animal Science, College of Agriculture and Natural Resources, Debre Markos University, Debre Markos, Ethiopia
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Valette N, Perrot T, Sormani R, Gelhaye E, Morel-Rouhier M. Antifungal activities of wood extractives. FUNGAL BIOL REV 2017. [DOI: 10.1016/j.fbr.2017.01.002] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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5
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Stajić M, Vukojević J, Milovanović I, Ćilerdžić J, Knežević A. Role of Mushroom Mn-Oxidizing Peroxidases in Biomass Conversion. ACTA ACUST UNITED AC 2016. [DOI: 10.1007/978-3-319-43679-1_10] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2023]
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Kamali M, Khodaparast Z. Review on recent developments on pulp and paper mill wastewater treatment. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2015; 114:326-42. [PMID: 24953005 DOI: 10.1016/j.ecoenv.2014.05.005] [Citation(s) in RCA: 156] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2014] [Revised: 05/07/2014] [Accepted: 05/09/2014] [Indexed: 05/24/2023]
Abstract
Economic benefits of the pulp and paper industry have led it to be one of the most important industrial sections in the world. Nevertheless, in recent years, pulp and paper mills are facing challenges with the energy efficiency mechanisms and management of the resulting pollutants, considering the environmental feedbacks and ongoing legal requirements. This study reviews and discusses the recent developments of affordable methods dealing with pulp and paper mill wastewaters. To this end, the current state of the various processes used for pulp and paper production from virgin or recovered fibers has been briefly reviewed. Also, the relevant contaminants have been investigated, considering the used raw materials and applied techniques as the subject for further discussion about the relevant suitable wastewater treatment methods. The results of the present study indicated that adopting the integrated methods, alongside a combination of biological (e.g., anaerobic digestion) and physicochemical (e.g., novel Fenton reactions) treatment methods, can be environmentally and economically preferable to minimize environmental contaminants and energy recycling.
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Affiliation(s)
| | - Zahra Khodaparast
- University of Aveiro, Department of Biology, Campus Universitario de Santiago, 3810-193 Aveiro, Portugal.
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Shabtay A, Hadar Y, Eitam H, Brosh A, Orlov A, Tadmor Y, Izhaki I, Kerem Z. The potential of Pleurotus-treated olive mill solid waste as cattle feed. BIORESOURCE TECHNOLOGY 2009; 100:6457-6464. [PMID: 19683915 DOI: 10.1016/j.biortech.2009.07.044] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2009] [Revised: 07/19/2009] [Accepted: 07/20/2009] [Indexed: 05/28/2023]
Abstract
The aims of the current study were to follow: (1) the capability of the edible mushroom Pleurotus ostreatus to degrade cell wall components and soluble phenols of the olive mill solid waste (OMSW), and improve it for ruminant nutrition (2) the fate of oil and the lipid-soluble compounds tocopherols, squalene and beta-sitosterol in the fermented OMSW. A significant decrease in oil and lipid-soluble compounds with a concomitant shift in the fatty acid profile and degradation of soluble phenols took place already after 14 d. The utilization of lipids by the fungus shifted the degradation of the structural carbohydrates to a later stage, and significantly reduced the metabolizable energy of the OMSW. We propose that edible fungi with reduced lipase activity would preserve the energy and health promoting ingredients of the oil, and force the fungus to degrade structural carbohydrates, thus improving its digestibility.
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Affiliation(s)
- Ariel Shabtay
- Institute of Animal Science, Department of Ruminant Science and Genetics, Newe Ya'ar Research Center, Agricultural Research Organization, P.O. Box 1021, Ramat Yishay 30095, Israel.
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Qin MH, Xu QH, Shao ZY, Gao Y, Fu YJ, Lu XM, Gao PJ, Holmbom B. Effect of bio-treatment on the lipophilic and hydrophilic extractives of wheat straw. BIORESOURCE TECHNOLOGY 2009; 100:3082-7. [PMID: 19268580 DOI: 10.1016/j.biortech.2009.01.055] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2008] [Revised: 01/27/2009] [Accepted: 01/29/2009] [Indexed: 05/17/2023]
Abstract
Wheat straw, an important papermaking raw material in China, was treated with a white-rot fungus of Phanerochaete chrysosporium ME446, and the lipophilic and hydrophilic extractives from the control and bio-treated samples were analyzed by GC and GC-MS. Bio-treatment of wheat straw could alter the chemical composition of both the lipophylic and hydrophilic extractives. Sugars and phenolic substances such as coniferyl alcohol, 4-hydroxycinnamic acid, 1-guaiacylglycerol and ferulic acid were substantially degraded or consumed by the fungus. More lipophilic substances such as wax, glycerides and steryl esters were degraded into the corresponding components, resulting in much higher concentrations of fatty acids and sterols in the bio-treated samples. Obviously, the bio-treatment of wheat straw was of benefit to pitch control in pulping and papermaking processes, in the view of degradation of the more lipophilic substances. In addition, the bio-treatment could increase the lignin concentration in hot-water extractives of wheat straw.
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Affiliation(s)
- M H Qin
- Shandong Key Laboratory of Pulp and Paper Engineering, Shandong Institute of Light Industry, University Park of Science and Technology, Jinan 250353, China.
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Microbial and enzymatic control of pitch in the pulp and paper industry. Appl Microbiol Biotechnol 2009; 82:1005-18. [DOI: 10.1007/s00253-009-1905-z] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2008] [Revised: 02/01/2009] [Accepted: 02/01/2009] [Indexed: 10/21/2022]
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Silvério FO, Barbosa LCA, Maltha CRA, Fidêncio PH, Cruz MP, Veloso DP, Milanez AF. Effect of storage time on the composition and content of wood extractives in Eucalyptus cultivated in Brazil. BIORESOURCE TECHNOLOGY 2008; 99:4878-4886. [PMID: 17988861 DOI: 10.1016/j.biortech.2007.09.066] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2007] [Revised: 09/14/2007] [Accepted: 09/15/2007] [Indexed: 05/25/2023]
Abstract
Lipophilic wood extractives commonly referred to as pitch, cause significant problems for the pulp and paper industries. The reduction of these extractives is an important aspect that concerns industries around the world. In the present work the change in the amount and chemical composition of lipophilic extractives from Eucalyptus spp. stored for 20, 40, 60, 100, 140 and 180 days after harvesting was investigated. The results showed a decrease in extractives content with storage time, with the most significant decrease occurring 60 days after harvesting. In addition, fatty acids and sterols were the main classes of compounds responsible for the significant decrease in extractive content. Data were analyzed by principal component analysis. PC1 explains approximately 99% of the total variance, and beta-sitosterol was the major compound responsible for the differentiation. These studies demonstrate that in terms of economical aspects, quality of the pulp and paper and minimization of pitch formation, the best period of wood storage is 60 days.
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Affiliation(s)
- Flaviano O Silvério
- Department of Chemistry, Federal University of Viçosa, 36570-000 Viçosa, MG, Brazil
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Kontkanen H, Tenkanen M, Reinikainen T. Purification and characterisation of a novel steryl esterase from Melanocarpus albomyces. Enzyme Microb Technol 2006. [DOI: 10.1016/j.enzmictec.2005.10.013] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Kontkanen H, Saloheimo M, Pere J, Miettinen-Oinonen A, Reinikainen T. Characterization of Melanocarpus albomyces steryl esterase produced in Trichoderma reesei and modification of fibre products with the enzyme. Appl Microbiol Biotechnol 2006; 72:696-704. [PMID: 16470365 DOI: 10.1007/s00253-006-0321-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2005] [Revised: 12/22/2005] [Accepted: 12/27/2005] [Indexed: 10/25/2022]
Abstract
Melanocarpus albomyces steryl esterase STE1 is considered to be an interesting tool for several industrial applications due to its broad substrate specificity. STE1 was produced in the filamentous fungus Trichoderma reesei in a laboratory bioreactor at an estimated production level of 280 mg l(-l). The properties of the purified recombinant enzyme (rSTE1), such as substrate specificity, molecular mass, pH optimum and stability and thermostability, were characterized and compared to the corresponding properties of the native enzyme. Sodium dodecyl sulphate-polyacrylamide gel electrophoresis showed one band with a molecular weight of 60 kDa for rSTE1, whereas analytical gel filtration showed a dimeric structure with a molecular weight of 120 kDa. The rSTE1 was somewhat less stable under different conditions and had slightly lower activities on various substrates than the native STE1. The effects of rSTE1 on the properties of paper sheets and polyethylene terephthalate (PET) fabric were preliminarily evaluated. Due to the hydrolysis of triglycerides and steryl esters by the rSTE1 treatment, the tensile strength and hydrophilicity of the paper were increased. The rSTE1 treatment increased significantly the polarity of PET by hydrolysing the ester bonds in the polyester backbone. Dyeing of PET with methylene blue was also slightly improved after rSTE1 treatment.
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Negro C, Blanco A, Saarimaa V, Tijero J. Optimization of Pitch Removal by Dissolved Air Flotation in a Eucalyptus Kraft Mill. SEP SCI TECHNOL 2005. [DOI: 10.1081/ss-200048173] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Calero-Rueda O, Plou FJ, Ballesteros A, Martínez AT, Martínez MJ. Production, isolation and characterization of a sterol esterase from Ophiostoma piceae. BIOCHIMICA ET BIOPHYSICA ACTA 2002; 1599:28-35. [PMID: 12479402 DOI: 10.1016/s1570-9639(02)00378-3] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
We studied extracellular sterol esterase production by the ascomycete Ophiostoma piceae in liquid culture. Esterase activity was found in low levels in glucose medium but it was strongly induced by olive oil. An esterase was purified from the 0.5% olive oil-supplemented cultures using ultrafiltration followed by a single chromatographic step on a hydrophobic interaction column. The enzyme was a glycoprotein with 8% N-linked carbohydrate content, a molecular mass by SDS/PAGE around 56.5 kDa and an isoelectric point of 3.3. Its N-terminal sequence was TTVNVKYPEGEVV. Substrate specificity studies showed that the O. piceae esterase hydrolyzes p-nitrophenol esters, tributyrin, triolein and different cholesterol esters. Both affinity (Km) and catalytic constant (k(cat)) were positively affected by the length of the fatty acid esterifying glycerol and cholesterol. The presence of double bonds in the acyl chain increased the enzyme efficiency, although it affected the k(cat) values rather than the Km on the cholesterol esters. The O. piceae enzyme showed no interfacial activation. This enzyme could have biotechnological applications in paper manufacturing since it efficiently hydrolyzes both triglycerides and sterol esters, which form pitch deposits during manufacturing of softwood and hardwood paper pulps, respectively.
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Affiliation(s)
- Olga Calero-Rueda
- Centro de Investigaciones Biológicas, CSIC, Velázquez 144, E-28006 Madrid, Spain
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del Río JC, Gutiérrez A, Martínez MJ, Martínez AT AT. Identification of a novel series of alkylitaconic acids in wood cultures of Ceriporiopsis subvermispora by gas chromatography/mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2002; 16:62-68. [PMID: 11754248 DOI: 10.1002/rcm.547] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
A novel series of long-chain unsaturated dicarboxylic acids consisting of a long aliphatic chain attached to the C-3 position of itaconic acid has been identified by gas chromatography/mass spectrometry during in vitro decay of eucalypt wood by the white-rot basidiomycete Ceriporiopsis subvermispora. The major compounds were identified as tetradecyl-, 7-hexadecenyl- and hexadecylitaconic acids by their mass fragmentation patterns. Other members of the same compound series, identified as dodecanyl-, tridecanyl-, tetradecenyl-, pentadecanyl-, octadecenyl- and octadecanylitaconic acids, were present in very minor amounts or traces. Whereas hexadecenylitaconic acid has already been reported in cultures of C. subvermispora, to our knowledge this is the first report of the presence of the other alkylitaconic acids in fungal cultures. These new alkylitaconic-type metabolites may constitute a source for peroxidizable lipids involved in lignin degradation during wood decay by C. subvermispora and other white-rot basidiomycetes.
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Affiliation(s)
- José C del Río
- Instituto de Recursos Naturales y Agrobiología, CSIC, Reina Mercedes 10, P.O. Box 1052, 41080, Seville, Spain.
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