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Neophytou N, Leonis G, Stavrinoudakis N, Simčič M, Grdadolnik SG, Papavassilopoulou E, Michas G, Moutevelis-Minakakis P, Papadopoulos MG, Zing M, Mavromoustakos T. Docking and Molecular Dynamics Calculations of Pyrrolidinone Analog MMK16 Bound to COX and LOX Enzymes. Mol Inform 2011; 30:473-86. [PMID: 27467091 DOI: 10.1002/minf.201000131] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2010] [Accepted: 02/14/2011] [Indexed: 11/07/2022]
Abstract
The new molecule 4-[(2S)-2-(1H-imidazol-1-ylmethyl)-5-oxotetrahydro-1H-pyrrol-1-yl]methylbenzenecarboxylic acid (MMK16) was found to have promising anti-inflammatory activity. This biological behavior of MMK16 triggered our interest to study its binding affinity using NMR spectroscopy in LOX and its docking and molecular dynamics (MD) properties in LOX and COX enzymes. The present NMR and docking binding studies not only rationalize the obtained biological results since in all three receptors MMK16 shows high affinity and scoring but also make it a potential dual LOX-5/COX-2 inhibitor. Thus, this class of molecules must be further investigated for discovering compounds possessing better biological activity and more lasting biological effect.
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Affiliation(s)
- N Neophytou
- Kapodistrian University of Athens, Panepistimiopolis, Zographou 15784, Athens, Greece
- Authors contributed equally to this work
| | - G Leonis
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas. Constantinou 48, 11635 Athens, Greece.
- Authors contributed equally to this work.
| | - N Stavrinoudakis
- Kapodistrian University of Athens, Panepistimiopolis, Zographou 15784, Athens, Greece
| | - M Simčič
- Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia
- EN-FIST Centre of Excellence, Dunajska 156, SI-1000 Ljubljana, Slovenia
| | - S Golič Grdadolnik
- Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia
- EN-FIST Centre of Excellence, Dunajska 156, SI-1000 Ljubljana, Slovenia
| | - E Papavassilopoulou
- Kapodistrian University of Athens, Panepistimiopolis, Zographou 15784, Athens, Greece
| | - G Michas
- Kapodistrian University of Athens, Panepistimiopolis, Zographou 15784, Athens, Greece
| | | | - M G Papadopoulos
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas. Constantinou 48, 11635 Athens, Greece
| | - M Zing
- Drug Discovery and Design Center (DDDC), Box 1201, Shanghai Institute of Materia Medica No. 555 Rd. Zuchongzhi, Shanghai, P. R. China
| | - T Mavromoustakos
- Kapodistrian University of Athens, Panepistimiopolis, Zographou 15784, Athens, Greece.
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11
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Potamitis C, Zervou M, Katsiaras V, Zoumpoulakis P, Durdagi S, Papadopoulos MG, Hayes JM, Grdadolnik SG, Kyrikou I, Argyropoulos D, Vatougia G, Mavromoustakos T. Antihypertensive Drug Valsartan in Solution and at the AT1 Receptor: Conformational Analysis, Dynamic NMR Spectroscopy, in Silico Docking, and Molecular Dynamics Simulations. J Chem Inf Model 2009; 49:726-39. [DOI: 10.1021/ci800427s] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Constantinos Potamitis
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Maria Zervou
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Vassilis Katsiaras
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Panagiotis Zoumpoulakis
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Serdar Durdagi
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Manthos G. Papadopoulos
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Joseph M. Hayes
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Simona Golic Grdadolnik
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Ioanna Kyrikou
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Dimitris Argyropoulos
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Georgia Vatougia
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
| | - Thomas Mavromoustakos
- National Hellenic Research Foundation, Institute of Organic and Pharmaceutical Chemistry, Vas, Constantinou 48, 11635, Athens, Greece, Department of Biology Chemistry and Pharmacy, Free University of Berlin, Takustrasse, 3, 14195 Berlin, Germany, Laboratory of Biomolecular Structure, National Institute of Chemistry, Hajdrihova 19, POB 30 SI-1115 Ljubljana, Slovenia, Varian Ltd., 10 Mead Road, Oxford Industrial Park, Yarnton, Oxford OX5 1QU, United Kingdom, Chemistry Department, National & Kapodistrian
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