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For: Sukumar M, Gierasch LM. Local interactions in a Schellman motif dictate interhelical arrangement in a protein fragment. Fold Des 1997;2:211-22. [PMID: 9269562 DOI: 10.1016/s1359-0278(97)00030-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Number Cited by Other Article(s)
1
Sanchez C, Ramirez A, Hodgson L. Unravelling molecular dynamics in living cells: Fluorescent protein biosensors for cell biology. J Microsc 2025;298:123-184. [PMID: 38357769 PMCID: PMC11324865 DOI: 10.1111/jmi.13270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 01/11/2024] [Accepted: 01/22/2024] [Indexed: 02/16/2024]
2
Rose GD. The Iconic α-Helix: From Pauling to the Present. Methods Mol Biol 2025;2867:1-17. [PMID: 39576572 DOI: 10.1007/978-1-0716-4196-5_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2024]
3
Thakur AK, Meng W, Gierasch LM. Local and non-local topological information in the denatured state ensemble of a β-barrel protein. Protein Sci 2018;27:2062-2072. [PMID: 30252171 DOI: 10.1002/pro.3516] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Revised: 09/18/2018] [Accepted: 09/19/2018] [Indexed: 11/06/2022]
4
Leader DP, Milner-White EJ. Bridging of partially negative atoms by hydrogen bonds from main-chain NH groups in proteins: The crown motif. Proteins 2015;83:2067-76. [DOI: 10.1002/prot.24923] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2015] [Revised: 08/29/2015] [Accepted: 09/01/2015] [Indexed: 11/05/2022]
5
Afzal AM, Al-Shubailly F, Leader DP, Milner-White EJ. Bridging of anions by hydrogen bonds in nest motifs and its significance for Schellman loops and other larger motifs within proteins. Proteins 2014;82:3023-31. [DOI: 10.1002/prot.24663] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Revised: 07/30/2014] [Accepted: 08/05/2014] [Indexed: 01/13/2023]
6
Budyak IL, Krishnan B, Marcelino-Cruz AM, Ferrolino MC, Zhuravleva A, Gierasch LM. Early folding events protect aggregation-prone regions of a β-rich protein. Structure 2013;21:476-85. [PMID: 23454187 DOI: 10.1016/j.str.2013.01.013] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2012] [Revised: 12/19/2012] [Accepted: 01/15/2013] [Indexed: 01/22/2023]
7
Basehore HK, Ropson IJ. Residual interactions in unfolded bile acid-binding protein by 19F NMR. Protein Sci 2011;20:327-35. [PMID: 21280124 DOI: 10.1002/pro.563] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
8
Vasudev PG, Chatterjee S, Shamala N, Balaram P. Structural Chemistry of Peptides Containing Backbone Expanded Amino Acid Residues: Conformational Features of β, γ, and Hybrid Peptides. Chem Rev 2010;111:657-87. [DOI: 10.1021/cr100100x] [Citation(s) in RCA: 273] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
9
NMR unfolding studies on a liver bile acid binding protein reveal a global two-state unfolding and localized singular behaviors. Arch Biochem Biophys 2009;481:21-9. [DOI: 10.1016/j.abb.2008.10.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2008] [Revised: 10/07/2008] [Accepted: 10/14/2008] [Indexed: 11/20/2022]
10
Krishnan B, Gierasch LM. Cross-strand split tetra-Cys motifs as structure sensors in a beta-sheet protein. CHEMISTRY & BIOLOGY 2008;15:1104-15. [PMID: 18940670 PMCID: PMC2631173 DOI: 10.1016/j.chembiol.2008.09.006] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 01/12/2008] [Revised: 09/17/2008] [Accepted: 09/22/2008] [Indexed: 10/21/2022]
11
Marcelino AMC, Gierasch LM. Roles of beta-turns in protein folding: from peptide models to protein engineering. Biopolymers 2008;89:380-91. [PMID: 18275088 PMCID: PMC2904567 DOI: 10.1002/bip.20960] [Citation(s) in RCA: 184] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
12
Bhattacharjya S, Xu P, Wang P, Osborne MJ, Ni F. Conformational analyses of a partially-folded bioactive prodomain of human furin. Biopolymers 2007;86:329-44. [PMID: 17477394 DOI: 10.1002/bip.20748] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
13
Marcelino AMC, Smock RG, Gierasch LM. Evolutionary coupling of structural and functional sequence information in the intracellular lipid-binding protein family. Proteins 2007;63:373-84. [PMID: 16477649 DOI: 10.1002/prot.20860] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
14
Gunasekaran K, Hagler AT, Gierasch LM. Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions. Proteins 2004;54:179-94. [PMID: 14696180 DOI: 10.1002/prot.10520] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
15
Ignatova Z, Gierasch LM. Monitoring protein stability and aggregation in vivo by real-time fluorescent labeling. Proc Natl Acad Sci U S A 2003;101:523-8. [PMID: 14701904 PMCID: PMC327180 DOI: 10.1073/pnas.0304533101] [Citation(s) in RCA: 188] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
16
Rotondi KS, Rotondi LF, Gierasch LM. Native structural propensity in cellular retinoic acid-binding protein I 64-88: the role of locally encoded structure in the folding of a beta-barrel protein. Biophys Chem 2003;100:421-36. [PMID: 12646381 DOI: 10.1016/s0301-4622(02)00296-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
17
Ermolenko DN, Thomas ST, Aurora R, Gronenborn AM, Makhatadze GI. Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices. J Mol Biol 2002;322:123-35. [PMID: 12215419 DOI: 10.1016/s0022-2836(02)00734-9] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
18
Meyer JD, Manning MC, Vander Velde DG. Characterization of the solution conformations of leuprolide acetate. THE JOURNAL OF PEPTIDE RESEARCH : OFFICIAL JOURNAL OF THE AMERICAN PEPTIDE SOCIETY 2002;60:159-68. [PMID: 12213125 DOI: 10.1034/j.1399-3011.2002.21006.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
19
Sagermann M, Mårtensson LG, Baase WA, Matthews BW. A test of proposed rules for helix capping: implications for protein design. Protein Sci 2002;11:516-21. [PMID: 11847274 PMCID: PMC2373482 DOI: 10.1110/ps.39802] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
20
Venkatraman J, Shankaramma SC, Balaram P. Design of folded peptides. Chem Rev 2001;101:3131-52. [PMID: 11710065 DOI: 10.1021/cr000053z] [Citation(s) in RCA: 573] [Impact Index Per Article: 23.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Eyles SJ, Gierasch LM. Multiple roles of prolyl residues in structure and folding. J Mol Biol 2000;301:737-47. [PMID: 10966780 DOI: 10.1006/jmbi.2000.4002] [Citation(s) in RCA: 73] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
22
Lacroix E, Viguera AR, Serrano L. Elucidating the folding problem of alpha-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters. J Mol Biol 1998;284:173-91. [PMID: 9811549 DOI: 10.1006/jmbi.1998.2145] [Citation(s) in RCA: 368] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
23
Clark PL, Weston BF, Gierasch LM. Probing the folding pathway of a beta-clam protein with single-tryptophan constructs. FOLDING & DESIGN 1998;3:401-12. [PMID: 9806942 DOI: 10.1016/s1359-0278(98)00053-4] [Citation(s) in RCA: 47] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
24
Aurora R, Rose GD. Helix capping. Protein Sci 1998;7:21-38. [PMID: 9514257 PMCID: PMC2143812 DOI: 10.1002/pro.5560070103] [Citation(s) in RCA: 625] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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