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Pessanha S, Braga D, Ensina A, Silva J, Vilchez J, Montenegro C, Barbosa S, Carvalho ML, Dias A. A non-destructive X-ray fluorescence method of analysis of formalin fixed-paraffin embedded biopsied samples for biomarkers for breast and colon cancer. Talanta 2023; 260:124605. [PMID: 37146458 DOI: 10.1016/j.talanta.2023.124605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Revised: 03/28/2023] [Accepted: 04/25/2023] [Indexed: 05/07/2023]
Abstract
In this work we present a methodology for the non-destructive elemental determination of formalin-fixed paraffin-embedded (FFPE) human tissue samples based on the Fundamental Parameters method for the quantification of micro Energy Dispersive X Ray Fluorescence (micro-EDXRF) area scans. This methodology intended to overcome two major constraints in the analysis of paraffin embedded tissue samples - retrieval of optimal region of analysis of the tissue within the paraffin block and the determination of the dark matrix composition of the biopsied sample. This way, an image treatment algorithm, based on R® tool to select the regions of the micro-EDXRF area scans was developed. Also, different dark matrix compositions were evaluated using varying combinations of H, C, N and O until the most accurate matrix was found: 8% H, 15% C, 1% N and 60% O for breast FFPE samples and 8% H, 23% C, 2% N and 55% O for colon. The developed methodology was applied to paired normal-tumour samples of breast and colon biopsied tissues in order to gauge potential elemental biomarkers for carcinogenesis in these tissues. The obtained results showed distinctive biomarkers for breast and for colon: there was a significant increase of P, S, K and Fe in both tissues, while a significant increase of Ca an Zn concentrations was also determined for breast tumour samples.
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Affiliation(s)
- Sofia Pessanha
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal; Laboratory of Instrumentation, Biomedical Engineering and Radiation Physics, Campus Caparica, 2829-516, Caparica, Portugal.
| | - Daniel Braga
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal
| | - Ana Ensina
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal
| | - João Silva
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal
| | - José Vilchez
- Centro Hospitalar Barreiro- Montijo, Av. Movimento das Forças Armadas 79C, 2830-003, Barreiro, Portugal
| | - Carlos Montenegro
- Centro Hospitalar Barreiro- Montijo, Av. Movimento das Forças Armadas 79C, 2830-003, Barreiro, Portugal
| | - Sofia Barbosa
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal; GeoBioTec, Campus Caparica, 2829-516, Caparica, Portugal
| | - Maria Luísa Carvalho
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal; Laboratory of Instrumentation, Biomedical Engineering and Radiation Physics, Campus Caparica, 2829-516, Caparica, Portugal
| | - António Dias
- NOVA School of Sciences and Technology, Campus Caparica, 2829-516, Caparica, Portugal; Laboratory of Instrumentation, Biomedical Engineering and Radiation Physics, Campus Caparica, 2829-516, Caparica, Portugal
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Mikhailov IF, Baturin AA, Mikhailov AI, Borisova SS, Fomina LP. Determination of coal ash content by the combined x-ray fluorescence and scattering spectrum. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:023103. [PMID: 29495817 DOI: 10.1063/1.4993101] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
An alternative method is proposed for the determination of the inorganic constituent mass fraction (ash) in solid fuel by the ratio of Compton and Rayleigh X-ray scattering peaks IC/IR subject to the iron fluorescence intensity. An original X-ray optical scheme with a Ti/Mo (or Sc/Cu) double-layer secondary radiator allows registration of the combined fluorescence-and-scattering spectrum at the specified scattering angle. An algorithm for linear calibration of the Compton-to-Rayleigh IC/IR ratio is proposed which uses standard samples with two certified characteristics: mass fractions of ash (Ad) and iron oxide (WFe2O3 ). Ash mass fractions have been determined for coals of different deposits in the wide range of Ad from 9.4% to 52.7% mass and WFe2O3 from 0.3% to 4.95% mass. Due to the high penetrability of the probing radiation with energy E > 17 keV, the sample preparation procedure is rather simplified in comparison with the traditional method of Ad determination by the sum of fluorescence intensities of all constituent elements.
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Affiliation(s)
- I F Mikhailov
- Department of Physics of Metals and Semiconductors, National Technical University "Kharkov Polytechnic Institute,"Kharkov, Ukraine
| | - A A Baturin
- Department of Physics of Metals and Semiconductors, National Technical University "Kharkov Polytechnic Institute,"Kharkov, Ukraine
| | - A I Mikhailov
- Department of Physics of Metals and Semiconductors, National Technical University "Kharkov Polytechnic Institute,"Kharkov, Ukraine
| | - S S Borisova
- Department of Physics of Metals and Semiconductors, National Technical University "Kharkov Polytechnic Institute,"Kharkov, Ukraine
| | - L P Fomina
- Department of Physics of Metals and Semiconductors, National Technical University "Kharkov Polytechnic Institute,"Kharkov, Ukraine
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Li F, Liu Z, Sun T. Authentication of vegetable oils by confocal X-ray scattering analysis with coherent/incoherent scattered X-rays. Food Chem 2016; 210:435-41. [DOI: 10.1016/j.foodchem.2016.05.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2015] [Revised: 02/28/2016] [Accepted: 05/01/2016] [Indexed: 10/21/2022]
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Ortel E, Hertwig A, Berger D, Esposito P, Rossi AM, Kraehnert R, Hodoroaba VD. New Approach on Quantification of Porosity of Thin Films via Electron-Excited X-ray Spectra. Anal Chem 2016; 88:7083-7090. [PMID: 27334649 DOI: 10.1021/acs.analchem.6b00847] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
One of the crucial characteristics of functionalized thin films is their porosity (i.e., the ratio between the pore volume and the volume of the whole film). Due to the very low amount of material per coated area corresponding to thin films, it is a challenge for analytics to measure the film porosity. In this work, we present an approach to determine the porosity of thin films by means of electron probe microanalysis (EPMA) either by wavelength-dispersive X-ray spectrometry (WDX) or by energy-dispersive X-ray spectrometry (EDX) with a scanning electron microscope (SEM). The procedure is based on the calculation of the film mass deposition from electron-excited X-ray spectra. The mass deposition is converted into film density by division of measured film thickness. Finally, the film porosity is calculated from the measured film density and the density of bulk, nonporous film material. The general applicability of the procedure to determine the porosity is demonstrated on thin templated mesoporous TiO2 films, dip-coated on silicon wafer, with controlled porosity in the range of 15 to 50%. The high accuracy of the mass deposition as determined from X-ray spectra was validated with independent methods (ICP-OES and weighing). Furthermore, for the validation of the porosity results, ellipsometry, interference fringes method (IFM), and focused ion beam (FIB) cross sectioning were employed as independent techniques. Hence, the approach proposed in the present study is proven to be suited as a new analytical tool for accurate and relatively fast determination of the porosity of thin films.
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Affiliation(s)
- Erik Ortel
- Federal Institute for Materials Research and Testing (BAM), Berlin 12200, Germany
| | - Andreas Hertwig
- Federal Institute for Materials Research and Testing (BAM), Berlin 12200, Germany
| | - Dirk Berger
- Technische Universität Berlin, Straße des 17. Juni 135, Berlin 10623, Germany
| | - Pasquale Esposito
- Istituto Nazionale di Ricerca Metrologica, Strada delle Cacce 91, Turin 10135, Italy
| | - Andrea M Rossi
- Istituto Nazionale di Ricerca Metrologica, Strada delle Cacce 91, Turin 10135, Italy
| | - Ralph Kraehnert
- Technische Universität Berlin, Straße des 17. Juni 135, Berlin 10623, Germany
| | - Vasile-Dan Hodoroaba
- Federal Institute for Materials Research and Testing (BAM), Berlin 12200, Germany
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