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Duong QH, Kwahk EJ, Kim J, Park H, Cho H, Kim H. Bioinspired Fluorine Labeling for 19F NMR-Based Plasma Amine Profiling. Anal Chem 2024; 96:1614-1621. [PMID: 38244044 DOI: 10.1021/acs.analchem.3c04485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2024]
Abstract
Metabolite profiling serves as a powerful tool that advances our understanding of biological systems, disease mechanisms, and environmental interactions. In this study, we present an approach employing 19F-nuclear magnetic resonance (19F NMR) spectroscopy for plasma amine profiling. This method utilizes a highly efficient and reliable fluorine-labeling reagent, 3,5-difluorosalicylaldehyde, which effectively emulates pyridoxal phosphate, facilitating the formation of Schiff base compounds with primary amines. The fluorine labeling allows for distinct resolution of 19F NMR signals from amine mixtures, leading to precise identification and quantification of amine metabolites in human plasma. This advancement offers valuable tools for furthering metabolomics research.
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Affiliation(s)
- Quynh Huong Duong
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
| | - Eun-Jeong Kwahk
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
| | - Jumi Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
| | - Hahyoun Park
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
| | - Heyjin Cho
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
| | - Hyunwoo Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea
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Tai Y, Zhang Z, Liu Z, Li X, Yang Z, Wang Z, An L, Ma Q, Su Y. D-ribose metabolic disorder and diabetes mellitus. Mol Biol Rep 2024; 51:220. [PMID: 38281218 PMCID: PMC10822815 DOI: 10.1007/s11033-023-09076-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 11/21/2023] [Indexed: 01/30/2024]
Abstract
D-ribose, an ubiquitous pentose compound found in all living cells, serves as a vital constituent of numerous essential biomolecules, including RNA, nucleotides, and riboflavin. It plays a crucial role in various fundamental life processes. Within the cellular milieu, exogenously supplied D-ribose can undergo phosphorylation to yield ribose-5-phosphate (R-5-P). This R-5-P compound serves a dual purpose: it not only contributes to adenosine triphosphate (ATP) production through the nonoxidative phase of the pentose phosphate pathway (PPP) but also participates in nucleotide synthesis. Consequently, D-ribose is employed both as a therapeutic agent for enhancing cardiac function in heart failure patients and as a remedy for post-exercise fatigue. Nevertheless, recent clinical studies have suggested a potential link between D-ribose metabolic disturbances and type 2 diabetes mellitus (T2DM) along with its associated complications. Additionally, certain in vitro experiments have indicated that exogenous D-ribose exposure could trigger apoptosis in specific cell lines. This article comprehensively reviews the current advancements in D-ribose's digestion, absorption, transmembrane transport, intracellular metabolic pathways, impact on cellular behaviour, and elevated levels in diabetes mellitus. It also identifies areas requiring further investigation.
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Affiliation(s)
- Yu Tai
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
| | - Zehong Zhang
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
- Department of Clinical Laboratory, the Fourth Hospital of Baotou, Baotou, Inner Mongolia, China
| | - Zhi Liu
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
| | - Xiaojing Li
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
| | - Zhongbin Yang
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
| | - Zeying Wang
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
| | - Liang An
- Department of Clinical Laboratory, the Fourth Hospital of Baotou, Baotou, Inner Mongolia, China
| | - Qiang Ma
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China
| | - Yan Su
- Institute of Biochemistry and Molecular Biology, Baotou Medical College, Baotou, Inner Mongolia, China.
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Liu W, Xu W, Luan HH, Li G, Liu J, Lu Z, Zhang F, Li H. L-ribose specific recognition surface constructed by pillar[5]arene-based host-guest interaction. Biosens Bioelectron 2023; 241:115678. [PMID: 37703641 DOI: 10.1016/j.bios.2023.115678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 08/22/2023] [Accepted: 09/06/2023] [Indexed: 09/15/2023]
Abstract
In living organisms, chiral molecules have specific chiral conformations that produce different physiological effects. Ribose is one of the components of RNA, which mainly plays a role in regulating biological activity. Inspired by the biological recognition of sugars, functional chiral surfaces for recognizing L-ribose through non-covalent interactions were constructed. In the strategy of this study, a functional chiral gold surface based on host-guest interactions was constructed through the assembly of the host molecule single-function alynyl pillar[5]arene(SAP5) and the guest molecule (S) -mandelate-violet (SMV). The association constant of SMV and SAP5 was calculated to be 2.95×104 M-1, with a binding ratio of 1:1. By impedance and contact angle detection, the constructed functional interface has good detection effect on L-ribose in the range of 1×10-7 M to1× 10-2 M. In addition, CV was disassembled from the aromatic cavity of pillar[5]arene after adding zinc powder and it can repeat five times with good recyclability, thus achieving the organic combination of interface recognition and intelligence.
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Affiliation(s)
- Wenhui Liu
- College of Chemistry, Huazhong Agricultural University, Wuhan, Hubei, 430070, PR China
| | - Weiwei Xu
- National Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan, 430079, PR China
| | - Hang-Hang Luan
- Department of Forensic Medicine, Zhongnan Hospital of Wuhan University, No. 169 East Lake Road, Wuchang District, Wuhan, 430071, PR China
| | - Guang Li
- National Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan, 430079, PR China
| | - Junan Liu
- College of Chemistry, Huazhong Agricultural University, Wuhan, Hubei, 430070, PR China.
| | - Zhiyan Lu
- Department of Forensic Medicine, Zhongnan Hospital of Wuhan University, No. 169 East Lake Road, Wuchang District, Wuhan, 430071, PR China.
| | - Fan Zhang
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules, College of Health Sciences and Engineering, Hubei University, Wuhan, 430062, PR China.
| | - Haibing Li
- National Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan, 430079, PR China.
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