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For: Morimoto D, Walinda E, Takashima S, Nishizawa M, Iwai K, Shirakawa M, Sugase K. Structural Dynamic Heterogeneity of Polyubiquitin Subunits Affects Phosphorylation Susceptibility. Biochemistry 2021;60:573-583. [PMID: 33616406 DOI: 10.1021/acs.biochem.0c00619] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Sorada T, Walinda E, Morimoto D. Cyclization of ubiquitin chains reinforces their recognition by ZNF216. FEBS Lett 2024;598:2249-2258. [PMID: 38853439 DOI: 10.1002/1873-3468.14951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 04/21/2024] [Accepted: 05/02/2024] [Indexed: 06/11/2024]
2
Hou XN, Song B, Zhao C, Chu WT, Ruan MX, Dong X, Meng LS, Gong Z, Weng YX, Zheng J, Wang J, Tang C. Connecting Protein Millisecond Conformational Dynamics to Protein Thermal Stability. JACS AU 2024;4:3310-3320. [PMID: 39211624 PMCID: PMC11350723 DOI: 10.1021/jacsau.4c00649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 08/07/2024] [Accepted: 08/07/2024] [Indexed: 09/04/2024]
3
Sorada T, Walinda E, Shirakawa M, Sugase K, Morimoto D. An integrated approach of NMR experiments and MD simulations visualizes structural dynamics of a cyclic multi-domain protein. Protein Sci 2023;32:e4768. [PMID: 37632150 PMCID: PMC10503408 DOI: 10.1002/pro.4768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 08/09/2023] [Accepted: 08/22/2023] [Indexed: 08/27/2023]
4
Walinda E, Sugase K, Ishii N, Shirakawa M, Iwai K, Morimoto D. Solution structure of the HOIL-1L NZF domain reveals a conformational switch regulating linear ubiquitin affinity. J Biol Chem 2023;299:105165. [PMID: 37595872 PMCID: PMC10511788 DOI: 10.1016/j.jbc.2023.105165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 08/07/2023] [Accepted: 08/14/2023] [Indexed: 08/20/2023]  Open
5
Sorada T, Morimoto D, Walinda E, Sugase K. Molecular recognition and deubiquitination of cyclic K48-linked ubiquitin chains by OTUB1. Biochem Biophys Res Commun 2021;562:94-99. [PMID: 34049206 DOI: 10.1016/j.bbrc.2021.05.031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 05/10/2021] [Indexed: 11/25/2022]
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