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Ölçücü G, Jaeger K, Krauss U. Magnetizing Biotech-Advances in (In Vivo) Magnetic Enzyme Immobilization. Eng Life Sci 2025; 25:e70000. [PMID: 40083857 PMCID: PMC11904115 DOI: 10.1002/elsc.70000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 12/14/2024] [Accepted: 01/05/2025] [Indexed: 03/16/2025] Open
Abstract
Industrial biocatalysis, a multibillion dollar industry, relies on the selectivity and efficacy of enzymes for efficient chemical transformations. However, enzymes, evolutionary adapted to mild biological conditions, often struggle in industrial processes that require harsh reaction conditions, resulting in reduced stability and activity. Enzyme immobilization, which addresses challenges such as enzyme reuse and stability, has therefore become a vital strategy for improving enzyme use in industrial applications. Traditional immobilization techniques rely on the confinement or display of enzymes within/on organic or inorganic supports, while recent advances in synthetic biology have led to the development of solely biological in vivo immobilization methods that streamline enzyme production and immobilization. These methods offer added benefits in terms of sustainability and cost efficiency. In addition, the development and use of multifunctional materials, such as magnetic (nano)materials for enzyme immobilization, has enabled improved separation and purification processes. The combination of both "worlds," opens up new avenues in both (industrial) biocatalysis, fundamental science, and biomedicine. Therefore, in this review, we provide an overview of established and recently emerging methods for the generation of magnetic protein immobilizates, placing a special focus on in vivo immobilization solutions.
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Affiliation(s)
- Gizem Ölçücü
- Institute of Bio‐ and Geosciences IBG‐1: BiotechnologyForschungszentrum Jülich GmbHJülichGermany
- Institute of Molecular Enzyme TechnologyHeinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbHJülichGermany
| | - Karl‐Erich Jaeger
- Institute of Bio‐ and Geosciences IBG‐1: BiotechnologyForschungszentrum Jülich GmbHJülichGermany
- Institute of Molecular Enzyme TechnologyHeinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbHJülichGermany
| | - Ulrich Krauss
- Institute of Bio‐ and Geosciences IBG‐1: BiotechnologyForschungszentrum Jülich GmbHJülichGermany
- Department of BiochemistryUniversity of BayreuthBayreuthGermany
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Zhou R, Qu J, Liu X, Lin F, Ohulchanskyy TY, Alifu N, Qu J, Yin DC. Biopharmaceutical drug delivery and phototherapy using protein crystals. Adv Drug Deliv Rev 2025; 216:115480. [PMID: 39613032 DOI: 10.1016/j.addr.2024.115480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 11/14/2024] [Accepted: 11/26/2024] [Indexed: 12/01/2024]
Abstract
Biopharmaceutical drugs, including proteins, peptides, and antibodies, are renowned for their high specificity and efficacy, fundamentally transforming disease treatment paradigms. However, their structural complexity presents challenges for their formulation and delivery. Protein crystals, characterized by high purity, high stability and a porous structure for biopharmaceutical drug encapsulation, providing a potential avenue for formulating and delivering biopharmaceutical drugs. There is increasing interest in engineering protein crystals to delivery biopharmaceutical drugs for biomedical applications. This review summarizes the recent advances in biopharmaceutical drug delivery and phototherapy using protein crystals. First, we evaluate the advantages of using protein crystals for biopharmaceutical drugs delivery. Next, we outline the strategies for in vitro and in vivo crystallization to prepare protein crystals. Importantly, the review highlights the advanced applications of protein crystals in biopharmaceutical drug delivery, tumor phototherapy, and other optical fields. Finally, it provides insights into future perspectives of biopharmaceutical drug delivery using protein crystals. This comprehensive review aims to provide effective insights into design of protein crystals to simplify biopharmaceutical drug delivery and improve disease treatment.
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Affiliation(s)
- Renbin Zhou
- Key Laboratory for Space Bioscience and Biotechnology, School of Life Sciences, Northwestern Polytechnical University, 127 Youyi West Road, Xi'an, Shaanxi Province 710072, China
| | - Jinghan Qu
- Key Laboratory for Space Bioscience and Biotechnology, School of Life Sciences, Northwestern Polytechnical University, 127 Youyi West Road, Xi'an, Shaanxi Province 710072, China
| | - Xuejiao Liu
- Key Laboratory for Space Bioscience and Biotechnology, School of Life Sciences, Northwestern Polytechnical University, 127 Youyi West Road, Xi'an, Shaanxi Province 710072, China
| | - Fangrui Lin
- College of Physics and Optoelectronic Engineering, Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, Shenzhen University, Shenzhen 518060, China.
| | - Tymish Y Ohulchanskyy
- College of Physics and Optoelectronic Engineering, Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, Shenzhen University, Shenzhen 518060, China
| | - Nuernisha Alifu
- School of Medical Engineering and Technology, Xinjiang Medical University, Urumqi 830054, China
| | - Junle Qu
- College of Physics and Optoelectronic Engineering, Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, Shenzhen University, Shenzhen 518060, China; School of Medical Engineering and Technology, Xinjiang Medical University, Urumqi 830054, China
| | - Da-Chuan Yin
- Key Laboratory for Space Bioscience and Biotechnology, School of Life Sciences, Northwestern Polytechnical University, 127 Youyi West Road, Xi'an, Shaanxi Province 710072, China.
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Jones AA, Snow CD. Porous protein crystals: synthesis and applications. Chem Commun (Camb) 2024; 60:5790-5803. [PMID: 38756076 DOI: 10.1039/d4cc00183d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
Large-pore protein crystals (LPCs) are an emerging class of biomaterials. The inherent diversity of proteins translates to a diversity of crystal lattice structures, many of which display large pores and solvent channels. These pores can, in turn, be functionalized via directed evolution and rational redesign based on the known crystal structures. LPCs possess extremely high solvent content, as well as extremely high surface area to volume ratios. Because of these characteristics, LPCs continue to be explored in diverse applications including catalysis, targeted therapeutic delivery, templating of nanostructures, structural biology. This Feature review article will describe several of the existing platforms in detail, with particular focus on LPC synthesis approaches and reported applications.
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Affiliation(s)
- Alec Arthur Jones
- School of Biomedical Engineering, Colorado State University, Fort Collins, CO 80523-1301, USA.
| | - Christopher D Snow
- School of Biomedical Engineering, Colorado State University, Fort Collins, CO 80523-1301, USA.
- Department of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO 80523-1301, USA
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Ölçücü G, Krauss U, Jaeger KE, Pietruszka J. Carrier‐Free Enzyme Immobilizates for Flow Chemistry. CHEM-ING-TECH 2023. [DOI: 10.1002/cite.202200167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Affiliation(s)
- Gizem Ölçücü
- Heinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbH Institute of Molecular Enzyme Technology Wilhelm Johnen Straße 52425 Jülich Germany
- Forschungszentrum Jülich GmbH Institute of Bio- and Geosciences IBG-1: Biotechnology Wilhelm Johnen Straße 52425 Jülich Germany
| | - Ulrich Krauss
- Heinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbH Institute of Molecular Enzyme Technology Wilhelm Johnen Straße 52425 Jülich Germany
- Forschungszentrum Jülich GmbH Institute of Bio- and Geosciences IBG-1: Biotechnology Wilhelm Johnen Straße 52425 Jülich Germany
| | - Karl-Erich Jaeger
- Heinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbH Institute of Molecular Enzyme Technology Wilhelm Johnen Straße 52425 Jülich Germany
- Forschungszentrum Jülich GmbH Institute of Bio- and Geosciences IBG-1: Biotechnology Wilhelm Johnen Straße 52425 Jülich Germany
| | - Jörg Pietruszka
- Forschungszentrum Jülich GmbH Institute of Bio- and Geosciences IBG-1: Biotechnology Wilhelm Johnen Straße 52425 Jülich Germany
- Heinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbH Institute of Biorganic Chemistry Wilhelm Johnen Straße 52425 Jülich Germany
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Bitterwolf P, Zoheir AE, Hertel J, Kröll S, Rabe KS, Niemeyer CM. Intracellular Assembly of Interacting Enzymes Yields Highly-Active Nanoparticles for Flow Biocatalysis. Chemistry 2022; 28:e202202157. [PMID: 36000795 PMCID: PMC9828753 DOI: 10.1002/chem.202202157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Indexed: 01/12/2023]
Abstract
All-enzyme hydrogel (AEH) particles with a hydrodynamic diameter of up to 120 nm were produced intracellularly with an Escherichia coli-based in vivo system. The inCell-AEH nanoparticles were generated from polycistronic vectors enabling simultaneous expression of two interacting enzymes, the Lactobacillus brevis alcohol dehydrogenase (ADH) and the Bacillus subtilis glucose-1-dehydrogenase (GDH), fused with a SpyCatcher or SpyTag, respectively. Formation of inCell-AEH was analyzed by dynamic light scattering and atomic force microscopy. Using the stereoselective two-step reduction of a prochiral diketone substrate, we show that the inCell-AEH approach can be advantageously used in whole-cell flow biocatalysis, by which flow reactors could be operated for >4 days under constant substrate perfusion. More importantly, the inCell-AEH concept enables the recovery of efficient catalyst materials for stable flow bioreactors in a simple and economical one-step procedure from crude bacterial lysates. We believe that our method will contribute to further optimization of sustainable biocatalytic processes.
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Affiliation(s)
- Patrick Bitterwolf
- Institute for Biological Interfaces (IBG1)Karlsruhe Institute of Technology (KIT)Hermann-von-Helmholtz-Platz 1Karlsruhe76344Germany
| | - Ahmed E. Zoheir
- Department of Genetics and CytologyNational Research Centre (NRC)33 El Buhouth St.Cairo12622Egypt
| | - Julian Hertel
- Institute for Biological Interfaces (IBG1)Karlsruhe Institute of Technology (KIT)Hermann-von-Helmholtz-Platz 1Karlsruhe76344Germany
| | - Sandra Kröll
- Institute for Biological Interfaces (IBG1)Karlsruhe Institute of Technology (KIT)Hermann-von-Helmholtz-Platz 1Karlsruhe76344Germany
| | - Kersten S. Rabe
- Institute for Biological Interfaces (IBG1)Karlsruhe Institute of Technology (KIT)Hermann-von-Helmholtz-Platz 1Karlsruhe76344Germany
| | - Christof M. Niemeyer
- Institute for Biological Interfaces (IBG1)Karlsruhe Institute of Technology (KIT)Hermann-von-Helmholtz-Platz 1Karlsruhe76344Germany
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Carballares D, Rocha-Martin J, Fernandez-Lafuente R. Coimmobilization of lipases exhibiting three very different stability ranges. Reuse of the active enzymes and selective discarding of the inactivated ones. Int J Biol Macromol 2022; 206:580-590. [PMID: 35218810 DOI: 10.1016/j.ijbiomac.2022.02.084] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 02/15/2022] [Accepted: 02/15/2022] [Indexed: 02/08/2023]
Abstract
Lipase B from Candida antarctica (CALB) and lipases from Candida rugosa (CRL) and Rhizomucor miehei (RML) have been coimmobilized on octyl and octyl-Asp agarose beads. CALB was much more stable than CRL, that was significantly more stable than RML. This forces the user to discard immobilized CALB and CRL when only RML has been inactivated, or immobilized CALB when CRL have been inactivated. To solve this problem, a new strategy has been proposed using three different immobilization protocols. CALB was covalently immobilized on octyl-vinyl sulfone agarose and blocked with Asp. Then, CRL was immobilized via interfacial activation. After coating both immobilized enzymes with polyethylenimine, RML could be immobilized via ion exchange. That way, by incubating in ammonium sulfate solutions, inactivated RML could be released enabling the reuse of coimmobilized CRL and CALB to build a new combi-lipase. Incubating in triton and ammonium sulfate solutions, it was possible to release inactivated CRL and RML, enabling the reuse of immobilized CALB when CRL was inactivated. These cycles could be repeated for 3 full cycles, maintaining the activity of the active and immobilized enzymes.
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Affiliation(s)
- Diego Carballares
- Departamento de Biocatálisis, ICP-CSIC, Campus UAM-CSIC, Madrid, Spain
| | - Javier Rocha-Martin
- Department of Biochemistry and Molecular Biology, Faculty of Biology, Complutense University of Madrid, José Antonio Novais 12, Madrid 28040, Spain.
| | - Roberto Fernandez-Lafuente
- Departamento de Biocatálisis, ICP-CSIC, Campus UAM-CSIC, Madrid, Spain; Center of Excellence in Bionanoscience Research, External Scientific Advisory Academic, King Abdulaziz University, Jeddah 21589, Saudi Arabia.
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