Halogen Bond Motifs in Cocrystals of N,N,O and N,O,O Acceptors Derived from Diketones and Containing a Morpholine or Piperazine Moiety

Competition vs. Cooperativity of I⋅⋅⋅Omorpholinyl and I⋅⋅⋅Cl-M Halogen Bonds in Cocrystals of Zinc(II) and Copper(II) Coordination Compounds Carrying Multiple Acceptor Sites

In order to explore a strategy for synthesizing halogen-bonded metal-organic cocrystals by utilizing metal complexes whose pendant chloride group and the morpholinyl oxygen atom enables halogen bonding, we have synthesized four pentacoordinated Cu(II) and Zn(II) complexes of the MCl2L general formula (L=imines prepared by the condensation reaction of 4-aminoethylmorpholine with 2-pyridinecarboxyaldehide or 2-acetylpyridine). The prepared metal complexes were further cocrystallized with selected iodoperfluorinated benzenes. Out of 20 combinations, 14 experiments yielded crystals suitable for single-crystal X-ray diffraction. Structural analysis revealed that in 7 cocrystals halogen bonds are formed both with morpholinyl oxygen as well as with chloride atoms. In 6 cocrystals only I⋅⋅⋅Cl halogen bonds are present, while only one cocrystal exclusively featured I⋅⋅⋅Omorpholinyl halogen bonds. We observed 5 halogen bonding motifs to the MCl2 moiety, in which each chloride atom can be an acceptor of one halogen bond, two, or none at all. The most common motif in our work (6 cocrystals) is where one chlorine atom is an acceptor of one halogen bond, while the other chlorine atom does not participate in halogen bonding. The crystal packing in the prepared cocrystals is directed by halogen-bonded architectures which are either zero-, one- or two-dimensional.

The Halogen Bond to Ethers - Prototypic Molecules and Experimental Electron Density

Halogen bonds to dialkyl ether molecules have remained largely unexplored. We here address the synthesis and the structural chemistry of the first halogen-bonded noncyclic alkyl ethers, combining 1,4-diiodotetrafluorobenzene and the prototypic or commonly used ethers dimethyl ether, tetrahydrofuran, and methyl-tert-butyl ether as halogen acceptors. Two different structural motifs based on moderately strong halogen bonds were obtained: Discrete trimolecular aggregates are formed, and unexpected halogen-bonded supramolecular chain adducts feature oxygen-bifurcated halogen bonds with 1:1 donor:acceptor ratio. Both structure types may be selectively obtained even for the same ether by adjusting the stoichiometry in the crystallization experiments. The geometric features of the etheric oxygen center were found to be flexible, in contrast to the almost linear geometry about the halogen donor atom. A high-resolution X-ray diffraction experiment on the extended adduct of dimethyl ether allowed us to study the electronic details of the acceptor-bifurcated I···O···I halogen bonds. The electron density in the bond critical points and derived properties such as the Laplacian indicate essentially electrostatic interactions and explain the geometrical flexibility of ethers in halogen bonds. Our studies demonstrate the great versatility of ethers as halogen bond acceptors, that can occur in many geometrical arrangements and whose contribution to nature's structural designs should not be underestimated.

Evaluation of Concomitant Halogen and Pnictogen Bonds in Cocrystals of Imines Derived from 2-Nitrobenzaldehyde and 4-Haloaniline

Three imines have been prepared by condensation of 2-nitrobenzaldehyde and 4-haloanilines (halo = Cl, Br, and I) with functionalities that enabled them to act as both halogen and pnictogen bond donors; however, both interactions were found to be absent in the solid state. The prepared imines were further cocrystallized with 1,3-diiodotetrafluorobenzene and 1,3,5-triiodotetrafluorobenzene as halogen bond donors. Six novel cocrystals were prepared by means of liquid-assisted mechanochemical synthesis and by crystallization from solution. All six cocrystals were of 1:1 stoichiometry and comprised a N···I halogen bond between an iodine atom of the perhalogenated halogen bond donor and the imino nitrogen atom of the imine acting as an acceptor. Additionally, in all six cocrystals, the imine molecules were interconnected by NO2···NO2 pnictogen bonding interactions. Computational analysis has shown that the NO2···NO2 exhibits bond critical point electron densities in the region (4.897-8.306) × 10-3 e Å-3 and interaction energies of 23.6-27.7 kJ mol-1, whereas the N···I halogen bonds generally have higher critical point electron densities ((1.795-1.937) × 10-2 e Å-3), but the corresponding total interaction energies are lower (19.4-20.4 kJ mol-1). Statistical analysis of the appearance of NO2···NO2 contacts concomitantly with halogen or hydrogen bonds seems to indicate that there is a positive correlation between the presence of NO2···NO2 pnictogen bonding interactions and other directional interactions in crystal structures.