Ultrafast Energy Transfer Determines the Formation of Fluorescence in DOM and Humic Substances

Recent Developments on the Three-Dimensional Structure of Dissolved Organic Matter: Toward a Unified Description

Advancing a common understanding about the chemical composition, size, and three-dimensional (3D) structure of dissolved organic matter (DOM) is paramount to deciphering its impact on and involvement in environmental processes, such as the fate and transport of contaminants and carbon cycling. Traditionally, DOM has been described as a collection of solvent-separated molecules or macromolecules. More recently, DOM has been depicted as a "supramolecular assembly", a collection of individual molecules and associations of molecules held together by non-covalent interactions. The supramolecular assembly model has been broadly invoked to rationalize certain behaviors and properties of DOM, yet the complexity of DOM has made it difficult to fully unravel the nature and contributions of its intermolecular interactions. Discussed in this perspective is evidence regarding thermodynamic drivers of intermolecular associations, DOM molecular size, sorption of organic contaminants to DOM, and optical properties of DOM. While single observations may be rationalized by former structural models, such as the supramolecular assembly model, combined evidence shows that the 3D structure of DOM is best described by a mixed dynamic assembly model (MDAM). The MDAM depicts DOM as a collection of solvent-separated molecules and small, tightly knit assemblies held together by strong hydrogen bonds, which may form large assemblies through weak intermolecular interactions only at specific pH values, high ionic strength, or high DOM concentration.

Spectral fingerprints of DOM-tungsten interactions: Linking molecular binding to conformational changes

Tungsten (W), a widely used yet understudied emerging contaminant, forms oxyanions in aqueous environments, distinguishing it from conventional heavy metals. While dissolved organic matter (DOM) demonstrates considerable potential for W binding, DOM-W interactions remain largely unexplored. Of particular significance, yet frequently overlooked, are the conformational changes in DOM during W binding processes. This study proposes a novel theoretical framework integrating superposition and charge transfer models to elucidate the complexity of these interactions. By combining spectroscopic techniques and photophysical models, we revealed that aromatic compounds containing 1-3 rings, especially monocyclic aromatic protein-like components, exhibit high affinity for W (logK=3.74-4.00). Phenolic hydroxyls served as primary binding sites for W, with aromatic rings facilitating binding through π interactions. Importantly, W binding to aromatic compounds induced conformational changes in DOM, transitioning from a loosely aggregated state to a more compact configuration. These changes facilitated W encapsulation within DOM through the synergistic effects of hydrophobic interactions, hydrogen/π-hydrogen bonding and π-stacking, potentially leading to stable trapping of W. Two-dimensional correlation spectroscopy analysis elucidated the sequential encapsulation process, involving phenolic, aromatic carboxylic/aliphatic carboxylic, polysaccharides, and aliphatics. The intricate behavior of DOM-W binding profoundly reshapes DOM's conformation, subtly yet significantly orchestrating W's binding affinity, environmental transport, and bioavailability in aquatic ecosystems.

Co-inoculation of fungi and desert cyanobacteria facilitates biological soil crust formation and soil fertility

The inoculation of cyanobacteria for enriching soil nutrients and forming biological soil crusts (BSCs) is considered an effective means to restore degraded soil. However, there are limited studies on the application of co-inoculation of fungi and cyanobacteria for degraded soil remediation. In this study, a high exopolysaccharide-secreting fungi Zh2 was isolated from lichen BSCs in Hobq Desert, and co-inoculated with a cyanobacterial strain identified as Phormidium tenue in different proportions to form BSCs on sand during a 35 days incubation period. Results revealed significant differences in crust biomass and soil properties among crusts with different cyanobacterial/fungal inoculation ratios. Microbial biomass, soil nutrient content and enzyme activities in crusts co-inoculated with cyanobacteria and fungi were higher than those inoculated with cyanobacteria and fungi alone. The inoculation of cyanobacteria contributed to the fulvic-like accumulation, and the inoculated fungi significantly increased the humic-like content and soil humification. Redundancy analysis showed that the inoculation of cyanobacteria was positively correlated with the activities of urease and phosphatase, and the content of fulvic-like. Meanwhile, the inoculation of fungi was positively correlated with the contents of total carbon, total nitrogen and humic-like, the activities of catalase and sucrase. Cyanobacteria and fungi play distinct roles in improving soil fertility and accumulating dissolved organic matter. This study provides new insights into the effects of cyanobacteria and fungi inoculations on the formation and development of cyanobacterial-fungus complex crusts, offering a novel method for accelerating induced crust formation on the surface of sand.

Deciphering DOM-metal binding using EEM-PARAFAC: Mechanisms, challenges, and perspectives

Dissolved organic matter (DOM) is a pivotal component of the biogeochemical cycles and can combine with metal ions through chelation or complexation. Understanding this process is crucial for tracing metal solubility, mobility, and bioavailability. Fluorescence excitation emission matrix (EEM) and parallel factor analysis (PARAFAC) has emerged as a popular tool in deciphering DOM-metal interactions. In this review, we primarily discuss the advantages of EEM-PARAFAC compared with other algorithms and its main limitations in studying DOM-metal binding, including restrictions in spectral considerations, mathematical assumptions, and experimental procedures, as well as how to overcome these constraints and shortcomings. We summarize the principles of EEM to uncover DOM-metal association, including why fluorescence gets quenched and some potential mechanisms that affect the accuracy of fluorescence quenching. Lastly, we review some significant and innovative research, including the application of 2D-COS in DOM-metal binding analysis, hoping to provide a fresh perspective for possible future hotspots of study. We argue the expansion of EEM applications to a broader range of areas related to natural organic matter. This extension would facilitate our exploration of the mobility and fate of metals in the environment.

Phototransformation of Lignin-related Compounds in Chromophoric Dissolved Organic Matter Solutions

Lignin is a major terrestrial source of chromophoric dissolved organic matter (CDOM), and studying the phototransformation of lignin monomers and their related compounds can enhance our understanding of CDOM intramolecular interactions. Coniferyl aldehyde (Coni) and sinapaldehyde (Sina) form ground-state complexes with CDOM, with equilibrium constants of 7,800 (± 1,800) and 20,000 (± 2,000) M-1, respectively. In comparison, vanillin (Van) exhibits minimal affinity for CDOM complexation. The bimolecular reaction rate constants between singlet oxygen (1O2) and these phenolic carbonyl compounds ranged from 0.46 (± 0.02) to 1.8 (± 0.1) × 107 M-1s-1, which is approximately one order of magnitude lower than their reaction rate constants (0.51 (± 0.02)-1.25 (± 0.02) × 108 M-1s-1) with the triplet excited state of CDOM (3CDOM*). In acidic CDOM solutions (pH 5.0), 1O2, H2O2, and organic peroxyl radicals had negligible impact on the transformation. Comparing the initial transformation rate in the presence and in the absence of NaN3 or furfuryl alcohol led to an overestimation of the contribution of 1O2 to the transformation of Van, Coni, or Sina. 3CDOM* scavengers could not fully inhibit the transformation of Coni or Sina. The remaining transformation is considered to arise from either the unquenched intra-CDOM phase 3CDOM* or a fraction of Coni⊂CDOM or Sina⊂CDOM complex, which underwent intramolecular photoinduced chemical reactions.

Fluorescence Quenching of Humic Substances and Natural Organic Matter by Nitroxide Free Radicals

Fluorescence spectroscopy is one of the most frequently used techniques for studying dissolved organic matter (DOM) in natural and engineered systems. However, the spatial distribution and fluorophores, including local and interacting states, within DOM's larger structure remains poorly understood. In this study, we used two nitroxide fluorescence quenchers to evaluate the chemical and spatial heterogeneity of DOM fluorophores. Several results from quenching experiments with cationic 4-amino-TEMPO (tempamine), including downward-curving Stern-Volmer plots and spectral dependent quenching, show that multiple emitting species contribute to the observed emission even at a single excitation wavelength. Furthermore, for DOM isolates of diverse geographic origins (soil vs aquatic) and isolation procedures (reverse osmosis vs humic substances), the maximum extent of quenching occurs on the red edge of the emission spectra. For soil humic substance isolates, the spectral dependent quenching was significant enough to affect a blue shift in the average emission wavelength. The same soil humic substance isolates whose emission spectra were blue shifted by tempamine quenching were also blue shifted by decreasing solution pH and decreasing solvent polarity, which suggests a role for anionic fluorophores (e.g., hydroxybenzoic acids) in long wavelength fluorescence. Finally, curvature in Stern-Volmer plots indicate that between 10 and 50% of emitting species detected by steady-state fluorescence are inaccessible to quenching by tempamine, suggesting that this fraction of fluorophores may be inaccessible to water solvent. Results from this study provide an assessment of the spatial distribution of fluorophores within DOM and help to reconcile prior studies on the role of solvent polarity and pH on DOM fluorescence.

Dissolved Organic Matter Promotes the Aging Process of Polystyrene Microplastics under Dark and Ultraviolet Light Conditions: The Crucial Role of Reactive Oxygen Species

Microplastics (MPs) interact frequently with dissolved organic matter (DOM) commonly found in the environment, but information on the aging behavior of MPs under the participation of DOM is still lacking. Thus, the polystyrene microplastic (PSMP) aging process with DOM participation was systematically studied by electron paramagnetic resonance spectroscopy, high-performance liquid chromatography, Fourier transform infrared (FTIR) spectroscopy, and two-dimensional correlation spectroscopy analyses under dark and ultraviolet (UV) light conditions. DOM was found to promote electron transfer to generate reactive oxygen species (ROS) under dark conditions and the aging of PSMPs, while the process of DOM generating ROS under UV light was more susceptible to photoelectrons and accelerated the aging process of PSMPs. However, among the four DOM types, fulvic acid (FA) has a more significant promoting effect on the aging process of PSMPs than humic acid, which can be attributed to the stronger conversion ability of FA to semiquinone radicals. Density functional theory calculations are used to describe the difference in the aging process of different structures of plastics with the participation of DOM. This study provides a necessary theoretical basis for the study of the migration of MPs in groundwater and deep surface water.