Density Functional Theory (DFT)-Based Bonding Analysis Correlates Ligand Field Strength with 99Ru Mössbauer Parameters of Ruthenium–Nitrosyl Complexes

Preliminary studies of XANES and DFT calculation of Ru extraction by imino-diacetamide and related compounds

We connected three research fields on Ru extraction, XANES, and DFT calculation and elucidate the sequence of distribution ratio (D) and their reactions. The magnitude order of the distribution ratio, D(Ru), from acids, HCl > H2SO4 > HNO3 > HClO4, by IDOA indicates to extract readily the stable Ru-Cl ions. The XANES signals, which suggests the electrical charge of Ru(III) extracted into the organic phase, supports the ion-pairing extraction of the anionic Ru-Cl complex with an extractant protonated. Ru(III) in other acids might be extracted by solvation of extractant, thus ion-pair extraction is stronger than solvation in Ru extraction. According to the D(Ru), the same extractant trend, NTAamide > MIDOA > IDOA, as the energy gap of HOMO and LUMO by DFT calculation is found, which suggests that DFT calculation can give the relative magnitude of each D(M) value when extractant and metal in an extraction are determined.

Local Oxidation States in {FeNO}6-8 Porphyrins: Insights from DMRG/CASSCF-CASPT2 Calculations

A first DMRG/CASSCF-CASPT2 study of a series of paradigmatic {FeNO}6, {FeNO}7, and {FeNO}8 heme-nitrosyl complexes has led to substantial new insight as well as uncovered key shortcomings of the DFT approach. By virtue of its balanced treatment of static and dynamic correlation, the calculations have provided some of the most authoritative information available to date on the energetics of low- versus high-spin states of different classes of heme-nitrosyl complexes. Thus, the calculations indicate low doublet-quartet gaps of 1-4 kcal/mol for {FeNO}7 complexes and high singlet-triplet gaps of ≳20 kcal/mol for both {FeNO}6 and {FeNO}8 complexes. In contrast, DFT calculations yield widely divergent spin state gaps as a function of the exchange-correlation functional. DMRG-CASSCF calculations also help calibrate DFT spin densities for {FeNO}7 complexes, pointing to those obtained from classic pure functionals as the most accurate. The general picture appears to be that nearly all the spin density of Fe[P](NO) is localized on the Fe, while the axial ligand imidazole (ImH) in Fe[P](NO)(ImH) pushes a part of the spin density onto the NO moiety. An analysis of the DMRG-CASSCF wave function in terms of localized orbitals and of the resulting configuration state functions in terms of resonance forms with varying NO(π*) occupancies has allowed us to address the longstanding question of local oxidation states in heme-nitrosyl complexes. The analysis indicates NO(neutral) resonance forms [i.e., Fe(II)-NO0 and Fe(III)-NO0] as the major contributors to both {FeNO}6 and {FeNO}7 complexes. This finding is at variance with the common formulation of {FeNO}6 hemes as Fe(II)-NO+ species but is consonant with an Fe L-edge XAS analysis by Solomon and co-workers. For the {FeNO}8 complex {Fe[P](NO)}-, our analysis suggests a resonance hybrid description: Fe(I)-NO0 ↔ Fe(II)-NO-, in agreement with earlier DFT studies. Vibrational analyses of the compounds studied indicate an imperfect but fair correlation between the NO stretching frequency and NO(π*) occupancy, highlighting the usefulness of vibrational data as a preliminary indicator of the NO oxidation state.

Conformation, hydration, and ligand exchange process of ruthenium nitrosyl complexes in aqueous solution: Free-energy calculations by a combination of molecular-orbital theories and different solvent models

Distribution of solvent molecules near transition-metal complex is key information to comprehend the functionality, reactivity, and so forth. However, polarizable continuum solvent models still are the standard and conventional partner of molecular-orbital (MO) calculations in the solution system including transition-metal complex. In this study, we investigate the conformation, hydration, and ligand substitution reaction between NO₂ ^- and H₂ O in aqueous solution for [Ru(NO)(OH)(NO₂ )₄ ]^2- (A), [Ru(NO)(OH)(NO₂ )₃ (ONO)]^2- (B), and [Ru(NO)(OH)(NO₂ )₃ (H₂ O)]^- (C) using a combination method of MO theories and a state-of-the-art molecular solvation technique (NI-MC-MOZ-SCF). A dominant species is found in the complex B conformers and, as expected, different between the solvent models, which reveals that molecular solvation beyond continuum media treatment are required for a reliable description of solvation near transition-metal complex. In the stability constant evaluation of ligand substitution reaction, an assumption that considers the direct association between the dissociated NO₂ ^- and complex C is useful to obtain a reliable stability constant.

The Ruthenium Nitrosyl Moiety in Clusters: Trinuclear Linear μ-Hydroxido Magnesium(II)-Diruthenium(II), μ3-Oxido Trinuclear Diiron(III)-Ruthenium(II), and Tetranuclear μ4-Oxido Trigallium(III)-Ruthenium(II) Complexes

The ruthenium nitrosyl moiety, {RuNO}⁶, is important as a potential releasing agent of nitric oxide and is of inherent interest in coordination chemistry. Typically, {RuNO}⁶ is found in mononuclear complexes. Herein we describe the synthesis and characterization of several multimetal cluster complexes that contain this unit. Specifically, the heterotrinuclear μ₃-oxido clusters [Fe₂RuCl₄(μ₃-O)(μ-OMe)(μ-pz)₂(NO)(Hpz)₂] (6) and [Fe₂RuCl₃(μ₃-O)(μ-OMe)(μ-pz)₃(MeOH)(NO)(Hpz)][Fe₂RuCl₃(μ₃-O)(μ-OMe)(μ-pz)₃(DMF)(NO)(Hpz)] (7·MeOH·2H₂O) and the heterotetranuclear μ₄-oxido complex [Ga₃RuCl₃(μ₄-O)(μ-OMe)₃(μ-pz)₄(NO)] (8) were prepared from trans-[Ru(OH)(NO)(Hpz)₄]Cl₂ (5), which itself was prepared via acidic hydrolysis of the linear heterotrinuclear complex {[Ru(μ-OH)(μ-pz)₂(pz)(NO)(Hpz)]₂Mg} (4). Complex 4 was synthesized from the mononuclear Ru complexes (H₂pz)[trans-RuCl₄(Hpz)₂] (1), trans-[RuCl₂(Hpz)₄]Cl (2), and trans-[RuCl₂(Hpz)₄] (3). The new compounds 4–8 were all characterized by elemental analysis, ESI mass spectrometry, IR, UV–vis, and ¹H NMR spectroscopy, and single-crystal X-ray diffraction, with complexes 6 and 7 being characterized also by temperature-dependent magnetic susceptibility measurements and Mössbauer spectroscopy. Magnetometry indicated a strong antiferromagnetic interaction between paramagnetic centers in 6 and 7. The ability of 4 and 6–8 to form linkage isomers and release NO upon irradiation in the solid state was investigated by IR spectroscopy. A theoretical investigation of the electronic structure of 6 by DFT and ab initio CASSCF/NEVPT2 calculations indicated a redox-noninnocent behavior of the NO ancillary ligand in 6, which was also manifested in TD-DFT calculations of its electronic absorption spectrum. The electronic structure of 6 was also studied by an X-ray charge density analysis.

Mononuclear trans-[Ru(OH)NO(Hpz)₄]²⁺ proved to be a source of μ-hydroxido and μ₃- and/or μ₄-oxido bridging groups, which could be incorporated into the heterotrinuclear complexes {[Ru(μ-OH)(μ-pz)₂(pz)(NO)(Hpz)]₂Mg}, [Fe₂RuCl₄(μ₃-O)(μ-OMe)(μ-pz)₂(NO)(Hpz)₂], and [Fe₂RuCl₃(μ₃-O)(μ-OMe)(μ-pz)₃(MeOH)(NO)(Hpz)][Fe₂RuCl₃(μ₃-O)(μ-OMe)(μ-pz)₃(DMF)(NO)(Hpz)] (7·MeOH·2H₂O) and the heterotetranuclear μ₄-oxido complex [Ga₃RuCl₃(μ₄-O)(μ-OMe)₃(μ-pz)₄(NO)]. The structures obtained were all confirmed by SC-XRD, including an X-ray charge density analysis that revealed the electronic structure of the RuFe2 cluster. Two of these nitrosyl complexes underwent photoinduced isomerization with generation of the nitrosyl linkage isomers MS1 and MS2, as revealed by IR spectroscopy at 10 K.

Density Functional Theory Study on the 193Ir Mössbauer Spectroscopic Parameters of Vaska's Complexes and Their Oxidative Adducts

In the present study, density functional theory (DFT) calculation was applied to Vaska's complexes of formula trans-[Ir^IX(CO)(PPh₃)₂] and their oxidative adducts with small molecules (YZ) including H₂, i.e., trans-[Ir^IIIClYZ(CO)(PPh₃)₂], to successfully correlate the electronic states of the complexes with the corresponding ¹⁹³Ir Mössbauer spectroscopic parameters. After confirming the reproducibility of the DFT methods for elucidating the equilibrium structures and ¹⁹³Ir Mössbauer isomer shifts of the octahedral Ir complexes, the isomer shifts and quadrupole splitting values of Vaska's complexes and their oxidative adducts were calculated. A bond critical point analysis revealed that the tendency in the isomer shifts was correlated with the strength of the covalent interaction in the coordination bonds. In an electric field gradient (EFG) analysis of the oxidative adducts, the sign of the principal axis was found to be positive for the complex with YZ = Cl₂ and negative for the complex with YZ = H₂. This reversal of the sign of the EFG principal axis was caused by the difference in the electron density distribution for the coordination bonds between Ir and YZ, according to a density of states analysis.

Environmental factors-mediated behavior of microplastics and nanoplastics in water: A review

The release of plastics in nature is an increasing global concern due to their degradation from microplastics (MPs) and even to nanoplastics (NPs), which are being recognized as a potential global threat to humans and environment. This paper summarizes the current knowledge on the effect of different environmental factors on the aggregation of MPs and NPs in aquatic environment. Stability (or extent of aggregation) of MPs and NPs varies with pH, ionic strength, ion type (monovalent, divalent, and trivalent), kind of minerals, and natural organic matter (NOM) of the aquatic environment. Electrostatic interactions between particles at different pH and ionic strength caused by salts of different valents govern the aggregation. In the presence of minerals (or inorganic colloids), net surface charge of mineral and surface potential of MPs and NPs (i.e., positive or negative surface functionality) play important roles in the heteroaggregation of MPs and NPs. In the presence of NOM, additional complex interactions including hydrophobic interactions and bridging are also involved in the aggregation of particles. Understanding the interactions of MPs and NPs of different surface charge with diverse environmental factors at a wide range of environmental conditions is pivotal to assess the mobility and the fate of degraded plastic particles and their risk to human health and ecological systems.

Complexation and bonding studies on [Ru(NO)(H2O)5]3+ with nitrate ions by using density functional theory calculation

Complexation reactions of ruthenium–nitrosyl complexes in HNO₃ solution were investigated by density functional theory (DFT) calculations in order to predict the stability of Ru species in high-level radioactive liquid waste (HLLW) solution. The equilibrium structure of [Ru(NO)(NO₃)₃(H₂O)₂] obtained by DFT calculations reproduced the experimental Ru–ligand bond lengths and IR frequencies reported previously. Comparison of the Gibbs energies among the geometrical isomers for [Ru(NO)(NO₃)_x(H₂O)_5−x]^(3−x)+/− revealed that the complexation reactions of the ruthenium–nitrosyl complexes with NO₃⁻ proceed via the NO₃⁻ coordination to the equatorial plane toward the Ru–NO axis. We also estimated Gibbs energy differences on the stepwise complexation reactions to succeed in reproducing the fraction of Ru–NO species in 6 M HNO₃ solution, such as in HLLW, by considering the association energy between the Ru–NO species and the substituting ligands. Electron density analyses of the complexes indicated that the strength of the Ru–ligand coordination bonds depends on the stability of the Ru species and the Ru complex without NO₃⁻ at the axial position is more stable than that with NO₃⁻, which might be attributed to the difference in the trans influence between H₂O and NO₃⁻. Finally, we demonstrated the complexation kinetics in the reactions x = 1 → x = 2. The present study is expected to enable us to model the precise complexation reactions of platinum-group metals in HNO₃ solution.

Density functional study on the complexation of [Ru(NO)(H₂O)₅]³⁺ with NO₃⁻ ions reproduced the stabilities of the geometrical isomers and the stepwise substitution reactivities by combining the association energy with the leaving/entering ligands.

Mössbauer isomer shifts and effective contact densities obtained by the exact two-component (X2C) relativistic method and its local variants

A standalone program to calculate scalar relativistic effective contact densities.