Nitrile Hydratases: From Industrial Application to Acetamiprid and Thiacloprid Degradation

Switching Nitrilase With Enantioselective Hydration Activity for Efficient Synthesis of Chiral 2,2-Dimethylcyclopropanecarboxamide

Chiral 2,2-dimethylcyclopropanecarboxamides serve as important pharmaceutical intermediates. However, enantioselective synthesis of 2,2-dimethylcyclopropanecarboxamides is difficult due to the unique bond angle and rigid planar structure of the dimethylcyclopropane skeleton. Although nitrile hydratases are attractive for amide biosynthesis, their practical applications are restricted because of narrow substrate spectrum and poor enantioselectivity. The catalytic promiscuity of nitrilases has brought an opportunity to engineer them with specific hydration activity and strict enantioselectivity. Through regulation of the characteristic distances affecting reaction specificity, as well as the key interface structure regions, a nitrilase BaNIT was switched into a novel "nitrile hydratase-like" enzyme with enhanced hydration activity and enantioselectivity toward 2,2-dimethylcyclopropanecarbonitrile. It represented a paradigmatic example for chiral amide synthesis via nitrilase. Compared to the wild type, the proportion of amide synthesized by the mutant increased from 11.2% to 98.8% with enantiomeric ratio (E) value increased from 10.8 to 291. Moreover, in-depth structural-functional analyses provided valuable insights into the molecular mechanisms underlying the enhanced catalytic performance, laying a solid foundation for the rational design of nitrilases with tailored properties for their broader applications.

Energy-Transfer-Based Dual-Mode PEC-ECL Biosensor for Acetamiprid Analysis Sensitized by Two-Step DNA Circuit Amplification

Sensitive and accurate determination of acetamiprid is highly desirable for guaranteeing food safety. In this Letter, an energy-transfer-based dual-mode biosensor was developed using zinc-based metal-organic frameworks (Zn-MOFs) acting as both photoelectrochemical (PEC) and electrochemiluminescent (ECL) donors and Pt@Cu2O cubic nanocrystals (CNs) as the energy acceptor for detecting acetamiprid. By integration of aptamer recognition with two-step DNA circuit amplification (entropy-driven DNA cycle and DNA walker), the detection of acetamiprid was converted into the assay of abundant intermediate DNA strands. With the help of nicking endonuclease, a large number of single-stranded DNAs was generated on the surface of Zn-MOFs, which were used as multifunctional PEC and ECL substrates. Through competitive hybridization, Pt@Cu2O CNs as broad-spectrum quenchers were introduced, thereby enabling changes in the PEC and ECL responses for acetamiprid quantitation. The experimental results proved that the combination of energy transfer, two-step DNA circuit amplification, and dual-mode sensing strategy achieved the sensitive and accurate analysis of acetamiprid, with low detection limits of 20.2 fM (PEC mode) and 17.5 fM (ECL mode) within a wide range from 0 to 1 × 10-9 M. The excellent specificity, reproducibility, and practicality confirmed the potential application of the biosensor for pesticide-related food safety.

Microbial degradation mechanisms of the neonicotinoids acetamiprid and flonicamid and the associated toxicity assessments

Extensive use of the neonicotinoid insecticides acetamiprid (ACE) and flonicamid (FLO) in agriculture poses severe environmental and ecological risks. Microbial remediation is considered a feasible approach to address these issues. Many ACE-and FLO-degrading microorganisms have been isolated and characterized, but few reviews have concentrated on the underlying degradation mechanisms. In this review, we describe the microbial degradation pathways of ACE and FLO and assess the toxicity of ACE, FLO and their metabolites. Especially, we focus on the enzymes involved in degradation of ACE and FLO, including cytochrome P450s, nitrile hydratases, amidases, and nitrilases. Those studies reviewed here further our understanding of the enzymatic mechanisms of microbial degradation of ACE and FLO, and aid in the application of microbes to remediate environmental ACE and FLO contamination.

Substrate access tunnel engineering of a Fe-type nitrile hydratase from Pseudomonas fluorescens ZJUT001 for substrate preference adjustment and catalytic performance enhancement

Substrate access tunnel engineering is a useful strategy for enzyme modification. In this study, we improved the catalytic performance of Fe-type Nitrile hydratase (Fe-type NHase) from Pseudomonas fluorescens ZJUT001 (PfNHase) by mutating residue Q86 at the entrance of the substrate access tunnel. The catalytic activity of the mutant PfNHase-αQ86W towards benzonitrile, 2-cyanopyridine, 3-cyanopyridine, and 4-hydroxybenzonitrile was enhanced by 9.35-, 3.30-, 6.55-, and 2.71-fold, respectively, compared to that of the wild-type PfNHase (PfNHase-WT). In addition, the mutant PfNHase-αQ86W showed a catalytic efficiency (kcat/Km) towards benzonitrile 17.32-fold higher than the PfNHase-WT. Interestingly, the substrate preference of PfNHase-αQ86W shifted from aliphatic nitriles to aromatic nitrile substrates. Our analysis delved into the structural changes that led to this altered substrate preference, highlighting an expanded entrance tunnel region, theenlarged substrate-binding pocket, and the increased hydrophobic interactions between the substrate and enzyme. Molecular dynamic simulations and dynamic cross-correlation Matrix (DCCM) further supported these findings, providing a comprehensive explanation for the enhanced catalytic activity towards aromatic nitrile substrates.

Molecular Modification Strategies of Nitrilase for Its Potential Application in Agriculture

Some feed source plants will produce secondary metabolites such as cyanogenic glycosides during metabolism, which will produce some poisonous nitrile compounds after hydrolysis and remain in plant tissues. The consumption of feed-source plants without proper treatment affect the health of the animals' bodies. Nitrilases can convert nitriles and have been used in industry as green biocatalysts. However, due to their bottleneck problems, their application in agriculture is still facing challenges. Acid-resistant nitrilase preparations, high-temperature resistance, antiprotease activity, strong activity, and strict reaction specificity urgently need to be developed. In this paper, the application potential of nitrilase in agriculture, especially in feed processing industry was explored, the source properties and catalytic mechanism of nitrilase were reviewed, and modification strategies for nitrilase application in agriculture were proposed to provide references for future research and application of nitrilase in agricultural and especially in the biological feed scene.

Efficient Biodegradation of the Neonicotinoid Insecticide Flonicamid by Pseudaminobacter salicylatoxidans CGMCC 1.17248: Kinetics, Pathways, and Enzyme Properties

Nitrile-containing insecticides can be converted into their amide derivatives by Pseudaminobacter salicylatoxidans. N-(4-trifluoromethylnicotinoyl) glycinamide (TFNG-AM) is converted to 4-(trifluoromethyl) nicotinoyl glycine (TFNG) using nitrile hydratase/amidase. However, the amidase that catalyzes this bioconversion has not yet been fully elucidated. In this study, it was discovered that flonicamid (FLO) is degraded by P. salicylatoxidans into the acid metabolite TFNG via the intermediate TFNG-AM. A half-life of 18.7 h was observed for P. salicylatoxidans resting cells, which transformed 82.8% of the available FLO in 48 h. The resulting amide metabolite, TFNG-AM, was almost all converted to TFNG within 19 d. A novel amidase-encoding gene was cloned and overexpressed in Escherichia coli. The enzyme, PmsiA, hydrolyzed TFNG-AM to TFNG. Despite being categorized as a member of the amidase signature enzyme superfamily, PsmiA only shares 20-30% identity with the 14 previously identified members of this family, indicating that PsmiA represents a novel class of enzyme. Homology structural modeling and molecular docking analyses suggested that key residues Glu247 and Met242 may significantly impact the catalytic activity of PsmiA. This study contributes to our understanding of the biodegradation process of nitrile-containing insecticides and the relationship between the structure and function of metabolic enzymes.

A CoII-Hydroxide Complex That Converts Directly to a CoII-Acetamide during Catalytic Nitrile Hydration

In exploring structural and functional mimics of nitrile hydratases, we report the synthesis of the pseudo-trigonal bipyramidal CoII complexes (K)[CoII(DMF)(LPh)] (1(DMF)), (NMe4)2[CoII(OAc)(LPh)] (1(OAc)), and (NMe4)2[CoII(OH)(LPh)] (1(OH)) (LPh = 2,2',2''-nitrilo-tris-(N-phenylacetamide; DMF = N,N-dimethylformamide; -OAc = acetate)). The complexes were characterized using NMR, FT-IR, ESI-MS, electronic absorption spectroscopy, and X-ray crystallography, showing the LPh ligand to bind in a tetradentate tripodal fashion alongside the respective ancillary donor. One of the complexes, 1(OH), is an unusual structural and functional mimic of the Co active site in Co nitrile hydratases. 1(OH) reacted with acetonitrile to yield the CoII-acetamide complex (NMe4)2[CoII(NHC(O)CH3)(LPh)], 2, which was also thoroughly characterized. In the presence of excess hydroxide, 1(OH) was found to catalyze quantitative conversion of the added hydroxide into acetamide. Despite the differences in Co oxidation state in nitrile hydratases and 1(OH) (CoIII versus CoII, respectively), 1(OH) was nonetheless an effective nitrile hydration catalyst, selectively producing acetamide over multiple turnovers.

Superior photo-Fenton degradation of acetamiprid by α- Fe2O3-pillared bentonite/L-cysteine complex: Synergy of L-cysteine and visible light

Acetamiprid is a potential threat to human health, aquatic life, soil microorganisms and beneficial insects as a recalcitrant pollutant in wastewater treatment plant effluents. In this work, the synthesized α-Fe2O3-pillared bentonite (FPB) was used to degrade acetamiprid in the photo-Fenton process with the assistance of L-cysteine (L-cys) existing in natural aquatic environment. The kinetic constant k of acetamiprid degradation by FPB/L-cys in the photo-Fenton process was far more than that in the Fenton process of FPB/L-cys lacking light and the photo-Fenton process of FPB without L-cys. The positive linear correlation between k and ≡Fe(II) content indicated the synergy of L-cys and visible light accelerated the cycle of Fe(III) to Fe(II) in FPB/L-cys during the degradation of acetamiprid by elevating the visible light response of FPB, and promoting the interfacial electron transfer from the active sites of FPB to hydrogen peroxide and photo-generated electron transfer from conduction band of α-Fe2O3 to the active sites of FPB. The boosting •OH and 1O2 were predominantly responsible for acetamiprid degradation. Acetamiprid could be efficiently degraded into less toxic small molecules in the photo-Fenton process via C-N bond breaking, hydroxylation, demethylation, ketonization, dechlorination, and ring cleavage.

Biodegradation of neonicotinoid insecticide acetamiprid by earthworm gut bacteria Brucella intermedium PDB13 and its ecotoxicity

Extensive use of neonicotinoid insecticides in recent decade had contaminated water and soil systems and poses serious environmental and health risk. Microbial degradation of toxic contaminants in the environment has been established as a sustainable tool towards its remediation. Under this context, the present study focused on the biodegradation of neonicotinoid insecticide acetamiprid, by bacterial strain Brucella intermedia PDB13 isolated from the gut of the acetamiprid exposed earthworms. To enhance acetamiprid biodegradation, suitable parameters such as pH, temperature, inoculum size and acetamiprid concentration range were optimised using Response Surface Methodology (RSM). The experimental results showed that the Brucella intermedium PDB13 can tolerate and degrade relatively high concentrations of acetamiprid (50 - 350 mg L^-1). The results confirmed that maximum degradation of about 89.72% was achieved under optimized conditions. Further, confirmation of acetamiprid biodegradation was assessed through the occurrence of its degraded metabolites through HPLC, FTIR, and LCMS analysis. Based on this analysis, possible acetamiprid biodegradation pathway by Brucella intermedia PDB13 was proposed. Additionally, cytotoxicity, earthworm acute toxicity, and zebrafish embryo toxicity studies were also performed to assess the toxicity variations between the parent compound and its metabolites. The acetamiprid treated group resulted in cytotoxic effects apparently, with the increase in aberrant cells frequency (22.5 ± 3.3), when compared with its metabolites (2.3 ± 4.3) and control (1.9 ± 5.6) respectively. All these results evidently reported the degradation potential of Brucella intermedia PDB13, thereby establishing the scope for further advanced biodegradation studies towards mitigating the pesticide pollution.