Competitive Ratiometric Aptasensing with Core-Internal Standard-Shell Structure Based on Surface-Enhanced Raman Scattering

Trace detection of S. aureus cells in food samples via RCA-assisted SERS signal amplification with core-shell nanoprobe

Staphylococcus aureus (S. aureus) has been identified as a indicator of food contamination. In this study, a sensitive and accurate biosensor strategy for S. aureus through rolling circle amplification-assisted surface-enhanced Raman scattering (RCA-assisted-SERS), has been established. The work relies on the interaction between the aptamer and its partial complementary DNA strands fabricated on the surface of gold and silver-assisted magnetic microspheres and the subsequent detachment to trigger the activation of the RCA process. In RCA, template DNA, T4 DNA ligase, and Phi29 DNA polymerase were assembled to form long single-stranded DNA containing repetitive sequences. The gold core encapsulated with a layer of 4-nitrothiophenol and further covered with a silica shell was employed as the SERS nanoprobe (Au@NTP@SiO2). Subsequently, the output and amplification of SERS signal were performed by hybridizing ssDNA functionalized Au@NTP@SiO2 to realize the quantitative detection of S. aureus. Under the optimal conditions, S. aureus sensing was monitored (36.0-3.6 × 108 cfu/mL) with a limit of detection of 2.0 cfu/mL. This strategy was further validated for S. aureus recognition in spiked real samples with favorable recoveries (94.0-103.4 %) at p > 0.05. The suggested RCA-assisted SERS approach exhibits potential for multiple foodborne pathogens in both food safety and biomedical investigations.

Quantitative immunoassay of prostate-specific antigen dependent on SERS substrate of polymer-silver nanocubes modified with 4-mercaptobenzoic acid: The crucial effect of thiol molecule as internal standard

The early and reliable detection of prostate cancer remains a significant challenge in clinical diagnostics. This study presents a quantitative immunoassay for prostate-specific antigen (PSA) using a surface-enhanced Raman scattering (SERS) substrate comprised of polymer-silver nanocubes (Ag NCs) modified with 4-mercaptobenzoic acid (4MBA). We investigated the impact of thiol-containing internal standards (IS) on the quantitative accuracy of SERS, highlighting the superior stability of 4MBA compared to non-thiol molecules like crystal violet (CV). In contrast to CV, 4MBA exhibited significantly greater stability, with only a 9.3 % decrease in characteristic peak intensity after prolonged storage. Furthermore, the quantitative detection of PSA was realized using an IS-mediated sandwich immunostructure. Particularly, the coefficient of determination (R2) for the PSA standard calibration curve demonstrated remarkable enhancement from 0.987 to 0.994, highlighting the advantage of thiol-anchored IS correction strategy. Moreover, the limit of detection (LOD) for PSA was refined to 5.6 × 10-10 mg/mL after a perfect linear fitting was facilitated using 4MBA-based IS correction, which was superior to standard enzyme-linked immunosorbent assay (ELISA) and comparable SERS techniques. In addition, the specificity of the assay was confirmed by the lack of signal for non-target antigens. These findings demonstrate that the strategic selection of robust IS molecules can significantly enhance the quantitative capabilities of SERS technology, paving the way for its application in clinical diagnostics.

Surface-Enhanced Raman Spectroscopy for Biomedical Applications: Recent Advances and Future Challenges

The year 2024 marks the 50th anniversary of the discovery of surface-enhanced Raman spectroscopy (SERS). Over recent years, SERS has experienced rapid development and became a critical tool in biomedicine with its unparalleled sensitivity and molecular specificity. This review summarizes the advancements and challenges in SERS substrates, nanotags, instrumentation, and spectral analysis for biomedical applications. We highlight the key developments in colloidal and solid SERS substrates, with an emphasis on surface chemistry, hotspot design, and 3D hydrogel plasmonic architectures. Additionally, we introduce recent innovations in SERS nanotags, including those with interior gaps, orthogonal Raman reporters, and near-infrared-II-responsive properties, along with biomimetic coatings. Emerging technologies such as optical tweezers, plasmonic nanopores, and wearable sensors have expanded SERS capabilities for single-cell and single-molecule analysis. Advances in spectral analysis, including signal digitalization, denoising, and deep learning algorithms, have improved the quantification of complex biological data. Finally, this review discusses SERS biomedical applications in nucleic acid detection, protein characterization, metabolite analysis, single-cell monitoring, and in vivo deep Raman spectroscopy, emphasizing its potential for liquid biopsy, metabolic phenotyping, and extracellular vesicle diagnostics. The review concludes with a perspective on clinical translation of SERS, addressing commercialization potentials and the challenges in deep tissue in vivo sensing and imaging.

Magnetic metal-organic frameworks-based ratiometric SERS aptasensor for sensitive detection of patulin in apples

Patulin (PAT), a major contaminant in apples, poses a considerable food safety risk, necessitating a rapid, sensitive and reliable detection method. This study developed a novel magnetic metal-organic frameworks (MOFs)-based ratiometric surface-enhanced Raman scattering (SERS) aptasensor. The sensor consists of magnetic MOFs loaded with 4-Mercaptobenzoic acid (4-MBA) internal labeled AuMBA@Ag as the SERS substrate, and gold nanorods (AuNRs) modified with Rhodamine 6G and aptamers as capture probes. This strategy enhances sensitivity through magnetic separation and abundant SERS hotspots provided by the magnetic MOF nanocomposites. The SERS intensity ratio showed a negative correlation with PAT concentrations from 0.01 to 100 ng/mL, with a LOD of 0.0465 ng/mL. Moreover, the aptasensor achieved 95.90 % ∼ 105.83 % recoveries in apple samples, indicating high accuracy and anti-interference capability. The excellent sensing performance demonstrates great potential of the SERS nanosensor for mycotoxin detection in actual food matrices.

A three-channel biosensor based on stimuli-responsive catalytic activity of the Fe3O4@Cu for on-site detection of tetrodotoxin in fish

Tetrodotoxin (TTX), a lethal neurotoxin, poses a grave threat to human health. The available spectroscopic methods suffer from limitations such as complex procedures and inadequate on-site capabilities. In this study, we proposed a method using Fe3O4@Cu as a catalytic biosensor combined with SERS, colorimetry and image processing for TTX detection. Integrating the aptamer amplifies the specificity of the system and masks the catalytic activity of Fe3O4@Cu. The catalytic efficiency of Fe3O4@Cu in the H2O2-TMB reaction can quantify the concentration of TTX in the system. Consequently, oxidation of TMB (oxTMB) led to the generation and change of signals for SERS, colorimetry and image processing, enabling a three-channel quantitative detection of TTX. Under the optimal conditions, the detection limit of established SERS, colorimetry and image processing were 0.055, 2.127 and 0.243 ng/mL, respectively. This three-channel biosensor was applied to real samples, providing an accurate, stable and adaptable alternative for on-site TTX detection.

Generalized ratiometric surface-enhanced Raman scattering biosensor for okadaic acid in food based on Au-triggered signal amplification

BACKGROUND

Reliability and robustness have been recognized as key challenges for Surface-enhanced Raman scattering (SERS) analytical techniques. Quantifying the concentration of an analyte using a single characteristic peak from SERS has been a controversial topic because the Raman signal is susceptible to highly concentrated electromagnetic hotspots, inhomogeneity of SERS substrate, or non-standardization of measurement conditions. Ratiometric SERS strategies have been demonstrated as a promising solution to effectively balance and compensate for signal fluctuations caused by matrix heterogeneity. However, it is not easy to construct ratiometric SERS sensors with monitoring the ratio of two different signal intensities for target analysis.

RESULTS

An attempt has been made to develop a novel ratiometric biosensor that can be applied to detect okadaic acid (OA). Aptamer-anchored magnetic particles were first combined with gold-tagged short complementary DNA (Au-cDNA) to create heterogeneous nanostructures. When the target was present, the Au-cDNA was dissociated from nanostructures, and 4-nitrothiophenol (4-NTP) was initiated to reduce to 4-aminothiophenol (4-ATP) in the presence of hydrogen sources. The SERS ratio change of 4-NTP and 4-ATP was finally detected by AuNPs-coated film. OA was successfully quantified, and the detection limit was as low as 2.4524 ng/mL. The constructed biosensor had good stability and reproducibility with a relative standard deviation of less than 4.47%. The proposed method used gold nanoparticles as an intermediate to achieve catalytic signal amplification and subsequently increased the sensitivity of the biosensor.

SIGNIFICANCE AND NOVELTY

Catalytic reaction-based ratiometric SERS biosensors combine the multiple advantages of catalytic signal amplification and signal self-calibration and provide new insights into the development of stable, reproducible, and reliable SERS detection techniques. This ratiometric SERS technique offered a universal method that is anticipated to be applicable for the detection of other targets by substituting the aptamer.

Biomimetic SERS substrate with silicon-mediated internal standard: Improved sensing of environmental pollutants and nutrients

Biomimetic materials with fascinating natural micro-nano surface structures offer a good choice for the simple fabrication of surface-enhanced Raman scattering (SERS) substrate. This study presented a novel sodium carboxymethylcellulose (NaCMC)-Ag biomimetic substrate which was fabricated through the reverse replication of micro-nano structures from cantaloupe peel. Particularly, silicon nanoparticles (Si NPs) were doped into this flexible biomimetic substrate in its fabrication process. Abundant electromagnetic "hotspots" could be effectively excited in this Ag densely covered matrix which maintained numerous protrusions as well as vertical and horizontal grooves. Specifically, the doped Si NPs exhibited a robust intrinsic Raman peak, which could be employed as an internal standard to calibrate the target signal. In this regard, the biomimetic substrate with the optimal electromagnetic enhancement and the quantitative calibration capabilities exhibited a high enhancement factor and a remedied linear relationship in the detection. After a perfect uniformity of signal was proved by the corrected SERS mapping, the biomimetic SERS substrate was finally utilized in the practical analysis of methylene blue (MB) and β-carotene with ultra-low limit of detection, highlighting its importance in practical detection scenarios.

Enhanced detection of endocrine disrupting chemicals in on-chip microfluidic biosensors using aptamer-mediated bridging flocculation and upconversion luminescence

Exposure to endocrine-disrupting chemicals (EDCs) can lead to detrimental impacts on human health, making their detection a critical issue. A novel approach utilizing on-chip microfluidic biosensors was developed for the simultaneous detection of two EDCs, namely, bisphenol A (BPA) and diethylstilbestrol (DES), based on upconversion nanoparticles doped with thulium (Tm) and erbium (Er), respectively. From the perspective of single nanoparticles, the construction of an active core-inert shell structure enhanced the luminescence of nanoparticles by 2.28-fold (Tm) and 1.72-fold (Er). From the perspective of the nanoparticle population, the study exploited an aptamer-mediated bridging flocculation mechanism and effectively enhanced the upconversion luminescence of biosensors by 8.94-fold (Tm) and 7.10-fold (Er). A chip with 138 tangential semicircles or quarter-circles was designed and simulated to facilitate adequate mixing, reaction, magnetic separation, and detection conditions. The on-chip microfluidic biosensor demonstrated exceptional capabilities for the simultaneous detection of BPA and DES with ultrasensitive detection limits of 0.0076 µg L-1, and 0.0131 µg L-1, respectively. The first reported aptamer-mediated upconversion nanoparticle bridging flocculation provided enhanced luminescence and detection sensitivity for biosensors, as well as offering a new perspective to address the instability of nanobiosensors.