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Fang X, Zhang W, Su H, Xie W, Jia L. A LAMP-based colorimetric and fluorescence dual-channel assay for on-site identification of adulterated meat by a portable device. Food Control 2025; 169:110984. [DOI: 10.1016/j.foodcont.2024.110984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2025]
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2
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Dai X, Cao M, Wang Z. Digital Melting Curve Analysis for Multiplex Quantification of Nucleic Acids on Droplet Digital PCR. BIOSENSORS 2025; 15:36. [PMID: 39852087 PMCID: PMC11764372 DOI: 10.3390/bios15010036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 01/01/2025] [Accepted: 01/08/2025] [Indexed: 01/26/2025]
Abstract
We present a cost-effective and simple multiplex nucleic acid quantification method using droplet digital PCR (ddPCR) with digital melting curve analysis (MCA). This approach eliminates the need for complex fluorescent probe design, reducing both costs and dependence on fluorescence channels. We developed a convolutional neighborhood search algorithm to correct droplet displacement during heating, ensuring precise tracking and accurate extraction of melting curves. An experimental protocol for digital MCA on the ddPCR platform was established, enabling accurate quantification of six target pathogen genes using a single fluorescence channel, with an average accuracy of 85%. Our method overcomes the multiplexing limitations of ddPCR, facilitating its application in multi-target pathogen detection.
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Affiliation(s)
| | | | - Zunliang Wang
- State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Si Pai Lou 2, Nanjing 210096, China
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3
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Liu J, Zeng S, Wan Y, Liu T, Chen F, Wang A, Tang W, Wang J, Yuan H, Negahdary M, Lin Y, Li Y, Wang L, Wu Z. Hybridization chain reaction cascaded amplification platform for sensitive detection of pathogen. Talanta 2023; 265:124829. [PMID: 37352781 DOI: 10.1016/j.talanta.2023.124829] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 06/09/2023] [Accepted: 06/14/2023] [Indexed: 06/25/2023]
Abstract
Rapid, sensitive, and accurate identification of pathogens is vital for preventing and controlling fish disease, reducing economic losses in aquaculture, and interrupting the spread of food-borne diseases in human populations. Herein, we proposed a hybridization chain reaction (HCR) cascaded dual-signal amplification platform for the ultrasensitive and specific detection of pathogenic microorganisms. A couple of specific primers for target bacterial 16S rRNAs were used to obtain amplified target single-stranded DNAs (AT-ssDNA). Then, AT-ssDNA initiated HCR amplification along with the opening of fluorophore (FAM) and a quencher (BHQ1) labeled hairpin reporter probe (H1), and the FAM fluorescence signal recovered. The proposed strategy could achieve a detection limit down to 0.31 CFU/mL for Staphylococcus aureus (S. aureus), 0.49 CFU/mL for Escherichia coli (E. coli) in buffer, and a linear range from 1 to 1 × 106 CFU/mL for S. aureus, 1 to 1 × 107 CFU/mL for E. coli. Furthermore, this platform enabled sensitive and precise detection of pathogenic microorganisms in complex samples such as fish blood and different organ tissues (large intestine, gallbladder, heart, liver, ren, gill, skin), which shows great potential in disease prevention and control in aquatic products.
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Affiliation(s)
- Jiaxin Liu
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China; Marine College, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Shu Zeng
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China; Marine College, Hainan University, 56 Renmin Road, Haikou, 570228, China.
| | - Yi Wan
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China; Marine College, Hainan University, 56 Renmin Road, Haikou, 570228, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao, 266071, China.
| | - Tianmi Liu
- Testing Center of Aquatic Product Quality Safety of Hainan Province, Haikou, 570206, China
| | - Fei Chen
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Anwei Wang
- Testing Center of Aquatic Product Quality Safety of Hainan Province, Haikou, 570206, China
| | - Wenning Tang
- Products Quality Supervision and Inspection Institute of Hainan Province, Haikou, 570206, China
| | - Jiali Wang
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China; Marine College, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Haoyu Yuan
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China; Marine College, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Masoud Negahdary
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000, Brazil
| | - Yutong Lin
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Yajing Li
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Lingxuan Wang
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China
| | - Zijing Wu
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, 56 Renmin Road, Haikou, 570228, China
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Muflihah, Hardianto A, Kusumaningtyas P, Prabowo S, Hartati YW. DNA-based detection of pork content in food. Heliyon 2023; 9:e14418. [PMID: 36938408 PMCID: PMC10020109 DOI: 10.1016/j.heliyon.2023.e14418] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 02/24/2023] [Accepted: 03/06/2023] [Indexed: 03/09/2023] Open
Abstract
Determination of halal food is essential in ensuring the tranquillity of consumers, especially Muslims. Halal products mean they are free from prohibited ingredients according to Islamic law. One ingredient that is prohibited is food products containing pork and its derivatives. An accurate verification method with a fast result is necessary to meet this requirement for halal food. DNA quantification of pork is now believed to be able to make accurate and quick decisions, as DNA acts as a reservoir or biological characterization of all living things, including pigs, according to specific characteristics of molecular and connection settings. Various DNA-based methods developed include PCR, biosensor and CRISPR methods. This review discussed various DNA-based Keywords: biosensor, CRISPR, detection, DNA, pork, PCR methods, including PCR, biosensor and CRISPR, to detect pork content in food. Among these methods, CRISPR is considered the easiest, fastest and most accurate. Therefore, it is important to develop this method further in the future. In this article, we provide a short review on DNA-based methods for detection of pork content in food products.
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Affiliation(s)
- Muflihah
- Doctoral Program in Analytical Chemistry, FMIPA Universitas Padjadjaran, Bandung, 45363, Indonesia
- Chemistry Education Study Program, Faculty of Teacher Training and Education, Universitas Mulawarman Samarinda, 75119, Indonesia
| | - Ari Hardianto
- Doctoral Program in Analytical Chemistry, FMIPA Universitas Padjadjaran, Bandung, 45363, Indonesia
| | - Pintaka Kusumaningtyas
- Chemistry Education Study Program, Faculty of Teacher Training and Education, Universitas Mulawarman Samarinda, 75119, Indonesia
| | - Sulistyo Prabowo
- Halal Center, Universitas Mulawarman, Samarinda, 75119 Indonesia
| | - Yeni Wahyuni Hartati
- Doctoral Program in Analytical Chemistry, FMIPA Universitas Padjadjaran, Bandung, 45363, Indonesia
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5
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Wibowo T, Cahyadi M, Pramono A, Volkandari SD. Evaluation of commercial meat product food label conformity using multiplex PCR assay. Food Control 2023. [DOI: 10.1016/j.foodcont.2023.109712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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6
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Zhang H, Cao W, Zhang Y, Chang Y, Huang H, Wei T, Wu J, Ye L, Shi L. Identification for meat adulteration (pork, beef, sheep and duck) in foodstuff by microfluidic chip-based real-time fluorescent LAMP. J Food Compost Anal 2023. [DOI: 10.1016/j.jfca.2023.105223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
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7
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Hashem A, Hossain MAM, Marlinda AR, Mamun MA, Simarani K, Johan MR. Rapid and sensitive detection of box turtles using an electrochemical DNA biosensor based on a gold/graphene nanocomposite. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2022; 13:1458-1472. [PMID: 36570614 PMCID: PMC9749552 DOI: 10.3762/bjnano.13.120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
Abstract
The Southeast Asian box turtle, Cuora amboinensis, is an ecologically important endangered species which needs an onsite monitoring device to protect it from extinction. An electrochemical DNA biosensor was developed to detect the C. amboinensis mitochondrial cytochrome b gene based on an in silico designed probe using bioinformatics tools, and it was also validated in wet-lab experiments. As a detection platform, a screen-printed carbon electrode (SPCE) enhanced with a nanocomposite containing gold nanoparticles and graphene was used. The morphology of the nanoparticles was analysed by field-emission scanning electron microscopy and structural characteristics were analysed by using energy-dispersive X-ray, UV-vis, and Fourier-transform infrared spectroscopy. The electrochemical characteristics of the modified electrodes were studied by cyclic voltammetry, differential pulse voltammetry (DPV), and electrochemical impedance spectroscopy. The thiol-modified synthetic DNA probe was immobilised on modified SPCEs to facilitate hybridisation with the reverse complementary DNA. The turtle DNA was distinguished based on hybridisation-induced electrochemical change in the presence of methylene blue compared to their mismatches, noncomplementary, and nontarget species DNA measured by DPV. The developed biosensor exhibited a selective response towards reverse complementary DNAs and was able to discriminate turtles from other species. The modified electrode displayed good linearity for reverse complementary DNAs in the range of 1 × 10-11-5 × 10-6 M with a limit of detection of 0.85 × 10-12 M. This indicates that the proposed biosensor has the potential to be applied for the detection of real turtle species.
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Affiliation(s)
- Abu Hashem
- Nanotechnology and Catalysis Research Centre, Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
- Microbial Biotechnology Division, National Institute of Biotechnology, Ganakbari, Ashulia, Savar, Dhaka-1349, Bangladesh
| | - M A Motalib Hossain
- Nanotechnology and Catalysis Research Centre, Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Ab Rahman Marlinda
- Nanotechnology and Catalysis Research Centre, Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Mohammad Al Mamun
- Nanotechnology and Catalysis Research Centre, Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
- Department of Chemistry, Jagannath University, Dhaka-1100, Bangladesh
| | - Khanom Simarani
- Department of Microbiology, Institute of Biological Sciences, Faculty of Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Mohd Rafie Johan
- Nanotechnology and Catalysis Research Centre, Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
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8
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Hashem A, Marlinda AR, Hossain MAM, Al Mamun M, Shalauddin M, Simarani K, Johan MR. A Unique Oligonucleotide Probe Hybrid on Graphene Decorated Gold Nanoparticles Modified Screen-Printed Carbon Electrode for Pork Meat Adulteration. Electrocatalysis (N Y) 2022. [DOI: 10.1007/s12678-022-00779-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Yan S, Lan H, Wu Z, Sun Y, Tu M, Pan D. Cleavable molecular beacon-based loop-mediated isothermal amplification assay for the detection of adulterated chicken in meat. Anal Bioanal Chem 2022; 414:8081-8091. [PMID: 36152037 DOI: 10.1007/s00216-022-04342-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 09/08/2022] [Accepted: 09/09/2022] [Indexed: 11/30/2022]
Abstract
A simple, sensitive, specific and fast method based on the loop-mediated isothermal amplification (LAMP) technique and cleavable molecular beacon (CMB) was developed for chicken authentication detection. LAMP and CMB were used for DNA amplification and amplicon analysis, respectively. Targeting the mitochondrial cytochrome b gene of chickens, five primers and one CMB probe were designed, and their specificity was validated against nine other animal species. The structure of CMB and concentrations of dNTPs, MgSO4, betaine, RNase H2, primers and CMB were optimized. The CMB-LAMP assay was completed within 17 min, and its limit of detection for chicken DNA was 1.5 pg μL-1. Chicken adulteration as low as 0.5% was detected in beef, and no cross-reactivity was observed. Finally, this assay was successfully applied to 20 commercial meat products. When combined with our developed DNA extraction method (the extraction time was 1 min: lysis for 10 s, washing for 20 s and elution for 30 s), the entire process (from DNA extraction to results analysis) was able to be completed within 20 min, which is at least 10 min shorter than other LAMP-based methods. Our method showed great potential for the on-site detection of chicken adulteration in meat.
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Affiliation(s)
- Song Yan
- State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo, 315211, China.,Key Laboratory of Animal Protein Deep Processing Technology of Zhejiang Province and College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315800, China
| | - Hangzhen Lan
- State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo, 315211, China. .,Key Laboratory of Animal Protein Deep Processing Technology of Zhejiang Province and College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315800, China.
| | - Zhen Wu
- State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo, 315211, China.,Key Laboratory of Animal Protein Deep Processing Technology of Zhejiang Province and College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315800, China
| | - Yangying Sun
- State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo, 315211, China.,Key Laboratory of Animal Protein Deep Processing Technology of Zhejiang Province and College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315800, China
| | - Maolin Tu
- State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo, 315211, China.,Key Laboratory of Animal Protein Deep Processing Technology of Zhejiang Province and College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315800, China
| | - Daodong Pan
- State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo, 315211, China. .,Key Laboratory of Animal Protein Deep Processing Technology of Zhejiang Province and College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo, 315800, China. .,National R&D Center for Freshwater Fish Processing, Jiangxi Normal University, Nanchang, 330022, Jiangxi, China.
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10
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Yang Q, Liu X, Wang L, Yu G, Yang H, Fu H, Li X, He N, Yu H, Dong J. Rapid and sensitive detection of Oncorhynchus mykiss adulteration in Salmo salar by recombinase polymerase amplification combined with lateral flow strip. Acta Biochim Biophys Sin (Shanghai) 2022; 54:1039-1042. [PMID: 35880570 PMCID: PMC9828328 DOI: 10.3724/abbs.2022079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Affiliation(s)
- Qiankun Yang
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China
| | - Xia Liu
- Department of Laboratory Medicinethe Second People’s Hospital of Lianyungang CityLianyungang222000China
| | - Lei Wang
- School of BiotechnologyJiangsu University of Science and TechnologyZhenjiang212018China
| | - Guili Yu
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China
| | - Haitao Yang
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China
| | - Hang Fu
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China
| | - Xueqing Li
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China
| | - Nana He
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China
| | - Hong Yu
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China,Correspondence address. Tel: +86-518-85895095; E-mail: (H.Y.) / E-mail: (J.D.) @jou.edu.cn
| | - Jingquan Dong
- Jiangsu Key Laboratory of Marine Bioresources and EnvironmentCo-Innovation Center of Jiangsu Marine Bio-industry TechnologyJiangsu Key Laboratory of Marine Pharmaceutical Compound ScreeningJiangsu Ocean UniversityLianyungang222005China,Correspondence address. Tel: +86-518-85895095; E-mail: (H.Y.) / E-mail: (J.D.) @jou.edu.cn
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11
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Qin P, Li Y, Yao B, Zhu Y, Xu J, Yao L, Chen W. Rational incorporating of loop-mediated isothermal amplification with fluorescence anisotropy for rapid, sensitive and on-site identification of pork adulteration. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.108863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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12
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Lestari D, Rohman A, Syofyan S, Yuliana ND, Abu Bakar NKB, Hamidi D. Analysis of beef meatballs with rat meat adulteration using Fourier Transform Infrared (FTIR) spectroscopy in combination with chemometrics. INTERNATIONAL JOURNAL OF FOOD PROPERTIES 2022. [DOI: 10.1080/10942912.2022.2083637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Dwi Lestari
- Faculty of Pharmacy, Universitas Andalas, Padang, Indonesia
- Faculty of Pharmacy, Universitas Muhammadiyah Kalimantan Timur, Samarinda, Indonesia
| | - Abdul Rohman
- Center of Excellence, Institute for Halal Industry and Systems, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | | | - Nancy Dewi Yuliana
- Department of Food Science and Technology, IPB University, Bogor, Indonesia
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13
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Dirong G, Nematbakhsh S, Selamat J, Chong PP, Idris LH, Nordin N, Fatchiyah F, Abdull Razis AF. Omics-Based Analytical Approaches for Assessing Chicken Species and Breeds in Food Authentication. Molecules 2021; 26:6502. [PMID: 34770913 PMCID: PMC8587031 DOI: 10.3390/molecules26216502] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 10/04/2021] [Accepted: 10/06/2021] [Indexed: 11/07/2022] Open
Abstract
Chicken is known to be the most common meat type involved in food mislabeling and adulteration. Establishing a method to authenticate chicken content precisely and identifying chicken breeds as declared in processed food is crucial for protecting consumers' rights. Categorizing the authentication method into their respective omics disciplines, such as genomics, transcriptomics, proteomics, lipidomics, metabolomics, and glycomics, and the implementation of bioinformatics or chemometrics in data analysis can assist the researcher in improving the currently available techniques. Designing a vast range of instruments and analytical methods at the molecular level is vital for overcoming the technical drawback in discriminating chicken from other species and even within its breed. This review aims to provide insight and highlight previous and current approaches suitable for countering different circumstances in chicken authentication.
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Affiliation(s)
- Goh Dirong
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia;
| | - Sara Nematbakhsh
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (S.N.); (J.S.); (N.N.)
| | - Jinap Selamat
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (S.N.); (J.S.); (N.N.)
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
| | - Pei Pei Chong
- School of Biosciences, Faculty of Health and Medical Sciences, Taylor’s University, Subang Jaya 47500, Selangor, Malaysia;
| | - Lokman Hakim Idris
- Department of Veterinary Preclinical Sciences, Faculty of Veterinary Medicine, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia;
| | - Noordiana Nordin
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (S.N.); (J.S.); (N.N.)
| | - Fatchiyah Fatchiyah
- Department of Biology, Faculty of Mathematic and Natural Science, Brawijaya University, JI. Veteran, Malang 65145, Indonesia;
| | - Ahmad Faizal Abdull Razis
- Natural Medicines and Products Research Laboratory, Institute of Bioscience, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia;
- Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia; (S.N.); (J.S.); (N.N.)
- Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
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14
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Uddin SMK, Hossain MAM, Chowdhury ZZ, Johan MR. Detection and discrimination of seven highly consumed meat species simultaneously in food products using heptaplex PCR-RFLP assay. J Food Compost Anal 2021. [DOI: 10.1016/j.jfca.2021.103938] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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15
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Uddin SMK, Hossain MAM, Chowdhury ZZ, Johan MRB. Short targeting multiplex PCR assay to detect and discriminate beef, buffalo, chicken, duck, goat, sheep and pork DNA in food products. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2021; 38:1273-1288. [PMID: 34077338 DOI: 10.1080/19440049.2021.1925748] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Food fraud is a global problem raising increased concerns during the past decades and food authenticity is now a burning issue. Beef, buffalo, chicken, duck, goat, sheep, and pork are heavily consumed meats bearing nutritional, economic and cultural/religious importance and are often found to be adulterated in raw and processed states. To authenticate these species, we developed and validated a highly specific multiplex (heptaplex) PCR assay targeting short length amplicons (73-263 bp) using seven pairs of species-specific primer sets targeting mitochondrial cytochrome b (cytb) and NADH dehydrogenase subunit 5 (ND5) genes. Specificity checking (in silico and in vitro) against 25 non-target species revealed no cross-species amplification. The developed multiplex assay was validated with various adulterated and heat-treated (boiled, microwaved and autoclaved) meatball products and were found to show high sensitivity and stability under all processing conditions. The assay was sensitive enough to detect 0.01-0.005 ng of DNA from raw meat and 0.5% (w/w) adulterated meat in mixed matrices. A market survey revealed mislabelling of 95% beef and 15% chicken products while pork products were found pure. Given some advantageous features including short sizes of amplicons, exceptional stability and superior sensitivity, the developed assay could be conveniently used for discriminatory detection of target species with a variety of raw meat as well as processed meat products undergoing extreme processing treatments.
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Affiliation(s)
- Syed Muhammad Kamal Uddin
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - M A Motalib Hossain
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Zaira Zaman Chowdhury
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Mohd Rafie Bin Johan
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
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16
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Zhang X, Armani A, Giusti A, Wen J, Fan S, Ying X. Molecular authentication of crocodile dried food products (meat and feet) and skin sold on the Chinese market: Implication for the European market in the light of the new legislation on reptile meat. Food Control 2021. [DOI: 10.1016/j.foodcont.2021.107884] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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17
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Xu W, Fu M, Huang M, Cui X, Li Y, Cao M, Wang L, Xiong X, Xiong X. Duplex real-time PCR combined with melting curve analysis for rapid detection of Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). J Food Compost Anal 2021. [DOI: 10.1016/j.jfca.2020.103765] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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18
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Using real time fluorescence loop-mediated isothermal amplification for rapid species authentication of Atlantic salmon (Salmo salar). J Food Compost Anal 2021. [DOI: 10.1016/j.jfca.2020.103659] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Wang D, Wang L, Xue C, Han Y, Li H, Geng J, Jie J. Detection of meat from horse, donkey and their hybrids (mule/hinny) by duplex real-time fluorescent PCR. PLoS One 2020; 15:e0237077. [PMID: 33373374 PMCID: PMC7771862 DOI: 10.1371/journal.pone.0237077] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Accepted: 07/19/2020] [Indexed: 12/04/2022] Open
Abstract
Meat adulteration is currently a common practice worldwide. In China, adulteration of donkey meat products with the similar species (horse and mule/hinny) meat and mislabeling are becoming widespread concerns. In this study, a sensitive and species-specific duplex real-time PCR assay based on the simultaneous amplification of fragments of the creatine kinase muscle gene family, was developed and optimized for the identification of horse, donkey and mule /hinny species in raw and heat-processed meat products. Duplex real-time PCR results showed different fluorescence amplification curves for horse and donkey. Both kinds of fluorescence amplification curves appeared simultaneously for mule/hinny. The limit of detection (LOD) of the method was up to 0.01 ng /μL. The method and strategy developed in this study could be applied to detect the presence of adulterants from horse and mule /hinny meat in raw donkey meat and meat products.
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Affiliation(s)
- Dan Wang
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
| | - Liping Wang
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
| | - Chenyu Xue
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
| | - Yuebei Han
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
| | - Hejing Li
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
| | - Jianqiang Geng
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
| | - Jiang Jie
- Biology Lab, Beijing Municipal Center for Food Safety Monitoring and Risk Assessment, Beijing, China
- * E-mail:
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20
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Chen X, Fu M, Xu W, Huang M, Cui X, Cao M, Xiong X, Xiong X. One‐step triplex high‐resolution melting (HRM) analysis for rapid identification of Atlantic cod (
Gadus morhua
), Alaska pollock (
Gadus chalcogrammus
) and haddock (
Melanogrammus aeglefinus
). Int J Food Sci Technol 2020. [DOI: 10.1111/ijfs.14924] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Xiaoye Chen
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Mingyang Fu
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Wenjie Xu
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Manhong Huang
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Xiaowen Cui
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Min Cao
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Xiaohui Xiong
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
| | - Xiong Xiong
- College of Food Science and Light Industry Nanjing Tech University Nanjing211800China
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21
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Zhang Q, Hao T, Hu D, Guo Z, Wang S, Hu Y. RNA aptamer-driven ECL biosensing for tracing histone acetylation based on nano-prism substrate and cascade DNA amplification strategy. Electrochim Acta 2020. [DOI: 10.1016/j.electacta.2020.136828] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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22
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Hossain MAM, Uddin SMK, Sultana S, Wahab YA, Sagadevan S, Johan MR, Ali ME. Authentication of Halal and Kosher meat and meat products: Analytical approaches, current progresses and future prospects. Crit Rev Food Sci Nutr 2020; 62:285-310. [DOI: 10.1080/10408398.2020.1814691] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- M. A. Motalib Hossain
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Syed Muhammad Kamal Uddin
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Sharmin Sultana
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Yasmin Abdul Wahab
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Suresh Sagadevan
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Mohd Rafie Johan
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
| | - Md. Eaqub Ali
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Kuala Lumpur, Malaysia
- Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya, Kuala Lumpur, Malaysia
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23
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Sabilla SI, Sarno R, Triyana K, Hayashi K. Deep learning in a sensor array system based on the distribution of volatile compounds from meat cuts using GC–MS analysis. SENSING AND BIO-SENSING RESEARCH 2020. [DOI: 10.1016/j.sbsr.2020.100371] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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24
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Yuan N, Zhang Y, Xu H, Zhou Z, Lu X, Chen T, Yang Q, Tan J, Zhang W. Development of the Saltatory Rolling Circle Amplification Assay for Rapid and Visual Detection of Alicyclobacillus acidoterrestris in Apple Juice. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:4538-4545. [PMID: 32208687 DOI: 10.1021/acs.jafc.0c00061] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A novel nucleic acid isothermal amplification method based on saltatory rolling circle amplification (SRCA) for rapid and visual detection of Alicyclobacillus acidoterrestris in apple juice was established. Fourteen A. acidoterrestris strains and 44 non-A. acidoterrestris strains were used to confirm the specificity. The sensitivity of SRCA was 4.5 × 101 CFU/mL by observing the white precipitate with the naked eye, while it was 4.5 × 100 CFU/mL by fluorescence visualization. The detection limit of SRCA in artificially inoculated apple juice was 7.1 × 101 and 7.1 × 100 CFU/mL via visualization of the white precipitate and fluorescence, respectively. Compared with the traditional PCR method, SRCA exhibited at least a 100-fold higher sensitivity and 100-fold lower detection limit. Seventy samples were investigated for A. acidoterrestris contamination, and the results showed 100% sensitivity, 97.01% specificity, and 97.14% accuracy compared with those by the conventional microbiological cultivation method. Overall, this method is a potentially useful tool for visual and rapid detection of A. acidoterrestris.
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Affiliation(s)
- Ning Yuan
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Yunzhe Zhang
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Hui Xu
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Zhijun Zhou
- Teaching experiment center, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Xin Lu
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Tingting Chen
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Qian Yang
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
| | - Jianxin Tan
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
| | - Wei Zhang
- College of Science and Technology, Hebei Agricultural University, Cangzhou 061100, Hebei, China
- College of Food Science and Technology, Hebei Agricultural University, Baoding 071001, Hebei, China
- College of Life Sciences, Hebei Agricultural University, Baoding 071001, Hebei, China
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25
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Zia Q, Alawami M, Mokhtar NFK, Nhari RMHR, Hanish I. Current analytical methods for porcine identification in meat and meat products. Food Chem 2020; 324:126664. [PMID: 32380410 DOI: 10.1016/j.foodchem.2020.126664] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 03/20/2020] [Accepted: 03/20/2020] [Indexed: 12/21/2022]
Abstract
Authentication of meat products is critical in the food industry. Meat adulteration may lead to religious apprehensions, financial gain and food-toxicities such as meat allergies. Thus, empirical validation of the quality and constituents of meat is paramount. Various analytical methods often based on protein or DNA measurements are utilized to identify meat species. Protein-based methods, including electrophoretic and immunological techniques, are at times unsuitable for discriminating closely related species. Most of these methods have been replaced by more accurate and sensitive detection methods, such as DNA-based techniques. Emerging technologies like DNA barcoding and mass spectrometry are still in their infancy when it comes to their utilization in meat detection. Gold nanobiosensors have shown some promise in this regard. However, its applicability in small scale industries is distant. This article comprehensively reviews the recent developments in the field of analytical methods used for porcine identification.
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Affiliation(s)
- Qamar Zia
- A New Mind, Ash Shati, Al Qatif 32617-3732, Saudi Arabia.
| | - Mohammad Alawami
- A New Mind, Ash Shati, Al Qatif 32617-3732, Saudi Arabia; Depaartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge CB3 0AS, United Kingdom
| | | | | | - Irwan Hanish
- Halal Product Research Institute, Universiti Putra Malaysia, UPM Serdang, Selangor 43400, Malaysia; Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, UPM Serdang, Selangor 43400, Malaysia
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