Identification of a Novel Nitroreductase LNR and Its Role in Pendimethalin Catabolism in Bacillus subtilis Y3

Enzymatic degradation of mycotoxin patulin by a short-chain dehydrogenase/reductase from Bacillus subtilis and its application in apple juice

Patulin (PAT), a notorious mycotoxin widely found in fruits and their derived products, poses serious health risks to humans and animals due to its high toxicity. Biodegradation based on microbial enzymes has shown broad application prospects in controlling PAT contamination due to its environmental friendliness, high efficiency, strong specificity, and mild conditions of action. Bacillus subtilis is a cosmopolitan probiotic bacterium with an extensive enzymatic profile, which could serve as a valuable resource for the effective production of a range of enzymes utilized in various industrial processes and production applications. In this work, we demonstrated that a short-chain dehydrogenase/reductase from B. subtilis (BsSDR) that can effectively convert PAT to the non-toxic E-ascladiol. Multiple sequence alignment results revealed that BsSDR displayed less than 30% identity with the previously reported PAT-degrading enzymes, indicating that it is a novel PAT-degrading enzyme. BsSDR exhibited a powerful PAT-degrading ability and strong PAT tolerance, as it was capable of degrading over 95% of PAT at initial concentrations of 50-500 μM. In addition, BsSDR exhibited the highest activity at pH 8.0 and 40 °C, and retained more than 60% residual activity after incubation at 40 °C for 3 h, indicating a remarkable thermostability of BsSDR. Molecular docking and site-directed mutagenesis indicated that the catalytic triad formed by the residues (S, Y, and K) was the key for short-chain dehydrogenase/reductase activity and this conserved catalytic mechanism was followed in BsSDR catalysis. More importantly, BsSDR is able to eliminate 83.61% of PAT in apple juice without compromising its quality during the biodegradation process. These results suggest that BsSDR may serve as a promising detoxification agent for the degradation of PAT in food processing.

Role of Bacillus sp. TF-1 in the Degradation and Detoxification of Trifluralin

Trifluralin, a widely utilized dinitroaniline herbicide, has emerged as a prevalent environmental contaminant that poses significant risks both to ecosystems and to human health. Microbial degradation represents the primary pathway for preventing trifluralin accumulation in the environment. Although much work has been conducted on the microbial breakdown of trifluralin, numerous challenges persist regarding the identification of efficient degrading strains, the elucidation of the metabolic pathways involved, and the application of bioremediation techniques. In this study, Bacillus sp. TF-1, a strain isolated from a paddy field that can utilize trifluralin as a source of carbon and energy, was applied. Remarkably, it eliminated 86.7% of 100 mg/L trifluralin within 6 h, and 99.7% of trifluralin was eliminated within 48 h. UPLC-MS analysis suggested that trifluralin degradation occurred first through mono-nitroreduction, followed by further nitroreduction and trifluoromethyl oxidation; trifluralin could also be metabolized through complete nitroreduction and N-dealkylation. Furthermore, Bacillus sp. TF-1 effectively mitigated the severe toxicity of trifluralin to sensitive crops. These findings not only expand the repertoire of efficient trifluralin-degrading microorganisms but also increase our understanding of trifluralin biodegradation pathways and highlight the biological importance of employing microbes to eradicate trifluralin residues from the environment.

Sulfur-functionalized porphyrin-based covalent organic framework as a metal-free dual-functional catalyst for photodegradation of organophosphorus pesticides under visible-LED-light

Parathion and diazinon are two significant organophosphorus pesticides broadly used in agriculture. However, these compounds are toxic and can enter into the environment and atmosphere via various processes. Herein, we synthesized and post-functionalized a porphyrinic covalent organic framework (COF), COF-366, with elemental sulfur under solvent-free conditions to give polysulfide-functionalized COF-366, namely PS@COF. The resulting material consisting of porphyrin sensitizer and sulfur nucleophilic sites was used as a dual-functional heterogeneous catalyst for the degradation of these organic compounds using visible-LED-light. Accordingly, the effects of several pertinent parameters such as pH (3-9), the catalyst dosage (5-30 mg), time (up to 80 min), and substrate concentration (10-50 mg L-1) were studied in detail and optimized. The post-modified COF showed excellent photocatalytic activity (>97%) in the detoxification of diazinon and parathion for 60 min at pH 5.5. Kinetic studies indicated a fast degradation rate with pseudo-second order model for 20 mg L-1 of diazinon and parathion. The total organic carbon detection and gas chromatography-mass spectrometry (GC-MS) confirmed the organic intermediates and byproducts formed during the process. PS@COF displayed good recyclability and high reusable efficiency for six cycles without a noteworthy lose in its catalytic activity, owing to its robust structure.

Bioremediation of a trifluralin contaminated soil using bioaugmentation with novel isolated bacterial strains and cyclodextrin

Trifluralin (TFL) is a highly persistent with a strong adsorption capacity on soil particles herbicide. This study was to isolate microbial consortia and bacterial strains from a soil with a historical application of pesticides to evaluate their potential to degrade TFL in soil. Different bioremediation techniques were considered for increasing the effectiveness of TFL degradation in soil. These techniques consisted of: i) biostimulation, using a nutrients solution (NS); ii) bioaugmentation, using a natural microbial consortium (NMC), seven individual bacterial strains isolated from NMC, and an artificial bacterial consortium formed by the seven TFL-degrading bacterial strains (ABC); iii) bioavailability enhancement, using a biodegradable compound, a randomly methylated cyclodextrin, RAMEB. Biostimulation using NS leads up to 34 % of soil TFL biodegraded after 100 d. When the contaminated soil was inoculated with NMC or ABC consortia, TFL loss increased up to 62 % and 74 %, respectively, with DT₅₀ values (required time for the pollutant concentration to decline to half of its initial value) of 5.9 and 11 d. In the case of soil inoculation with the isolated individual bacterial strains, the extent of TFL biodegradation ranged widely from 2.3 % to 55 %. The most efficient bacterial strain was Arthrobacter aurescens CTFL7 which had not been previously described in the literature as a TFL-degrading bacterium. Bioaugmentation with CTFL7 bacterium was also tested in the presence of RAMEB, provoking a drastic increase in herbicide biodegradation up to 88 %, achieving a DT₅₀ of only 19 d. Cyclodextrins had never been tested before for enhancement of TFL biodegradation. An ecotoxicity assay was performed to confirm that the proposed bioremediation techniques were also capable to reduce toxicity. A Microtox® test showed that after application A. aurescens CTF7 and A. aurescens CTF7 + RAMEB, the TFL-contaminated soil, which initially presented acute toxicity, became non-toxic at the end of the biodegradation experiments.

Recent advances in biological removal of nitroaromatics from wastewater

Various nitroaromatic compounds (NACs) released into the environment cause potential threats to humans and animals. Biological treatment is valued for cost-effectiveness, environmental friendliness, and availability when treating wastewater containing NACs. Considering the significance and wide use of NACs, this review focuses on recent advances in biological treatment systems for NACs removal from wastewater. Meanwhile, factors affecting biodegradation and methods to enhance removal efficiency of NACs are discussed. The selection of biological treatment system needs to consider NACs loading and cost, and its performance is affected by configuration and operation strategy. Generally, sequential anaerobic-aerobic biological treatment systems perform better in mineralizing NACs and removing co-pollutants. Future research on mechanism exploration of NACs biotransformation and performance optimization will facilitate the large-scale application of biological treatment systems.

Gold-based strip sensor for the rapid and sensitive detection of butralin in tomatoes and peppers

Butralin is a widely used dinitroaniline herbicide. Butralin residues in vegetables or fruits represent a threat to human health. In this study, we developed a rapid and sensitive gold-based lateral flow immunoassay (LFIA) for butralin detection in tomato and green pepper samples based on a screened monoclonal antibody (mAb) against butralin. The mAb possessed a half-maximal inhibitory concentration (IC₅₀) of 12.7 ng/mL, with no cross-reactivity toward other dinitroaniline herbicides. The established LFIA strip had a visible limit of detection (LOD) of 50 ng/g and a cut-off value of 2000 ng/g in tomato and green pepper samples. According to the calibration curves for quantitative analysis, the calculated LODs of the LFIA strip were 4.7 ng/g and 4.3 ng/g in tomato and green pepper, respectively. The results were obtained within 10 min. The average recoveries ranged between 95.4% and 109.6% with a coefficient of variation (CV) of 4.3% to 7.1% in tomato samples and between 94.8% and 109.1% with a CV of 3.9% to 6.1% in green pepper samples. These data suggested that our proposed LFIA is a sensitive, specific, and reliable method for the rapid detection of butralin in real samples.

Atlas of the microbial degradation of fluorinated pesticides

Fluorine-based agrochemicals have been benchmarked as the golden standard in pesticide development, prompting their widespread use in agriculture. As a result, fluorinated pesticides can now be found in the environment, entailing serious ecological implications due to their harmfulness and persistence. Microbial degradation might be an option to mitigate these impacts, though environmental microorganisms are not expected to easily cope with these fluoroaromatics due to their recalcitrance. Here, we provide an outlook on the microbial metabolism of fluorinated pesticides by analyzing the degradation pathways and biochemical processes involved, while also highlighting the central role of enzymatic defluorination in their productive metabolism. Finally, the potential contribution of these microbial processes for the dissipation of fluorinated pesticides from the environment is also discussed.

The elucidation of the biodegradation of nitrobenzene and p-nitrophenol of nitroreductase from Antarctic psychrophile Psychrobacter sp. ANT206 under low temperature

Psychrobacter is one important typical strain in the Antarctic environment. In our previous study, Psychrobacter sp. ANT206 from Antarctica with novel cold-adapted nitroreductase (PsNTR) could biodegrade nitrobenzene and p-nitrophenol in low temperature environment. In this study, the in-frame deletion mutant of psntr (Δpsntr-ANT206) that displayed well genetic stability and kanamycin resistance stability was constructed using allelic replacement method. Additionally, Δpsntr-ANT206 was more sensitive to nitrobenzene and p-nitrophenol in the comparison of heat and hyperosmolarity, suggesting that psntr gene participated in the regulation of the tolerance against nitro-aromatic compounds (NACs). Further analysis was conducted by integrated gas chromatography-mass spectrometry (GC-MS), and several metabolites were identified. Among them, ethylbenzene, L-Alanine, citric acid, aniline, 4-aminophenol and other metabolites were different between the wild-type strain and Δpsntr-ANT206 under nitrobenzene and p-nitrophenol stress at different time periods under low temperature, respectively. These data could increase the knowledge of the construction of deletion mutant strains and biodegradation mechanism of NACs of typical strains Psychrobacter from Antarctica, which would also provide the basis of the molecular technique on the regulation of bioremediation of the contaminants under low temperature in the future.

Biodegradation and Abiotic Degradation of Trifluralin: A Commonly Used Herbicide with a Poorly Understood Environmental Fate

Trifluralin is a widely used dinitroaniline herbicide, which can persist in the environment and has substantial ecotoxicity, especially to aquatic organisms. Trifluralin is very insoluble in water (0.22 mg/L at 20 °C) and highly volatile (vapor pressure of 6.7 mPa at 20 °C); these physicochemical properties determine a large part of its environmental fate, which includes rapid loss from soils if surface-applied, strong binding to soil organic matter, and negligible leaching into water. The trifluralin structure contains a tertiary amino group, two nitro-groups and a trifluoromethyl- group. Despite the strongly xenobiotic character of some of these substituents, biodegradation of trifluralin does occur, and pure cultures of bacteria and fungi capable of partially degrading the molecule either by dealkylation or nitro-group reduction have been identified. There are many unanswered questions about the environmental fate and metabolism of this herbicide; the genes and enzymes responsible for biodegradation are largely unknown, the relative roles of abiotic processes vs growth-linked biodegradation vs cometabolism are unresolved, and the impact of different environmental factors on the rates and extents of biodegradation are not clear. Here, we summarize the relevant literature on the persistence and environmental fate of trifluralin with a focus on biodegradation pathways and mechanisms, and we identify the current major knowledge gaps for future research.

Novel Biomedical Functions of Surfactin A from Bacillus subtilis in Wound Healing Promotion and Scar Inhibition

Surfactin produced by Bacillus subtilis is a powerful biosurfactant in food, cosmetics, and pesticide industries. However, its suitability in wound healing applications is uncertain. In this article, we determined the effects of surfactin A from B. subtilis on wound healing, angiogenesis, cell migration, inflammatory response, and scar formation. The results indicated that 80.65 ± 2.03% of surfactin A-treated wounds were closed, whereas 44.30 ± 4.26% of the vehicle-treated wound areas remained open on day 7 (P < 0.05). In mechanisms, it upregulated the expression of hypoxia-inducible factor-1α (HIF-1α) and vascular endothelial growth factor (VEGF), accelerated keratinocyte migration through mitogen-activated protein kinase (MAPK) and nuclear factor-κB (NF-κB) signaling pathways, and regulated the secretion of proinflammatory cytokines and macrophage phenotypic switch. More attractive, surfactin A showed a seductive capability to inhibit scar tissue formation by affecting the expression of α-smooth muscle actin (α-SMA) and transforming growth factor (TGF-β). Overall, the study revealed a new function and potential of surfactin A as an affordable and efficient wound healing drug.