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Choukairi Afailal N, Chan SC, Costas M. Manganese-Catalyzed Enantioselective Dearomative Epoxidation of Naphthalenes with Aqueous Hydrogen Peroxide. Angew Chem Int Ed Engl 2025:e202504356. [PMID: 40237300 DOI: 10.1002/anie.202504356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2025] [Revised: 04/15/2025] [Accepted: 04/16/2025] [Indexed: 04/18/2025]
Abstract
Arenes are abundantly occurring molecules of significant interest as versatile starting materials in organic reactions. Typically, oxidation of arenes yields planar molecules such as phenols and quinones. However, several iron dependent oxygenases can disrupt the aromaticity of arenes through oxidation and introduce C(sp3)─O stereogenic centers, resulting in precious enantioenriched epoxide or diol products. Emulating this enzymatic behavior with synthetic catalysts has met little success until now. Herein we describe a catalytic chemo- and enantioselective dearomative epoxidation of naphthalenes. The singular chemo- and enantioselectivity features of the reaction critically rely on a manganese catalyst that combines electron donating groups and steric demand on the ligand and activates hydrogen peroxide under mild conditions and short reaction times. Assisted with an N-protected amino acid, this catalyst epoxidizes a range of naphthalenes providing chemically versatile diepoxides in moderate to good yields and high levels of enantioselectivity. Straightforward elaboration gives diverse access to densely functionalized 3D structurally rich oxygenated molecules. The reaction constitutes a paradigmatical example of expedient access to stereochemically rich, valuable oxygenated molecules from readily available feedstocks, enabled by highly reactive yet selective biologically inspired oxidation catalysts.
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Affiliation(s)
- Najoua Choukairi Afailal
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus Montilivi, Girona, Catalonia, E-17071, Spain
| | - Siu-Chung Chan
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus Montilivi, Girona, Catalonia, E-17071, Spain
| | - Miquel Costas
- Institut de Química Computacional i Catàlisi (IQCC) and Departament de Química, Universitat de Girona, Campus Montilivi, Girona, Catalonia, E-17071, Spain
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Usuba S, Morisako S, Masada K, Sugamata K, Sasamori T. A Disila[2]ferrocenophane with a Bridging 9,9'-Bi-9 H-9-Silafluorene Moiety. Molecules 2025; 30:1361. [PMID: 40142137 PMCID: PMC11944698 DOI: 10.3390/molecules30061361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2025] [Revised: 03/16/2025] [Accepted: 03/17/2025] [Indexed: 03/28/2025] Open
Abstract
A disila[2]ferrocenophane bearing a 9,9'-bi-9H-9-silafluorene (9-silafluorene dimer) moiety as a bridging unit was synthesized and isolated as a stable crystalline compound. Disila[2]ferrocenophane 1, newly obtained in this study, has been characterized by spectroscopic analyses, single crystal X-ray diffraction (SC-XRD) analysis, and electrochemical measurements. It was found that the obtained disila[2]ferrocenophane was reduced by a reducing agent to generate the corresponding 1,1'-ferrocenediyl-bis(silylanion) via the reductive Si-Si σ-bond cleavage. The trapping reactions of the 1,1'-ferrocenediyl-bis(silylanion) thus generated with electrophiles have also been attempted.
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Affiliation(s)
- Shinnosuke Usuba
- Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan;
| | - Shogo Morisako
- Sagami Chemical Research Institute, Hayakawa 2743-1, Ayase 252-1193, Kanagawa, Japan;
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan; (K.M.); (K.S.)
| | - Koichiro Masada
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan; (K.M.); (K.S.)
- Tsukuba Research Center for Energy Materials Sciences (TREMS), University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan
| | - Koh Sugamata
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan; (K.M.); (K.S.)
- Tsukuba Research Center for Energy Materials Sciences (TREMS), University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan
| | - Takahiro Sasamori
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan; (K.M.); (K.S.)
- Tsukuba Research Center for Energy Materials Sciences (TREMS), University of Tsukuba, 1-1-1 Tennoudai, Tsukuba 305-8571, Ibaraki, Japan
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3
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Baykov SV, Katlenok EA, Semenov AV, Baykova SO, Boyarskiy VP, Bokach NA, Kukushkin VY. Different Stacking Types in a Single Hybrid Cocrystal System: π···π- and π-Hole-Based Organic-Inorganic Planar Assemblies. Inorg Chem 2025; 64:4005-4016. [PMID: 39976573 DOI: 10.1021/acs.inorgchem.4c05326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2025]
Abstract
The planar bis-chelated complex [Pd(N∩O)2] (1; N∩O = 4-MeC5H3NNC(O)NMe2) exhibits two distinct stacking modes with electron-deficient aromatics: π···π stacking with hexafluorobenzene (C6F6) versus charge-transfer π-hole interactions with 1,2,4,5-tetracyanobenzene (TCB). Cocrystallization of the complex with C6F6 or TCB yields cocrystals 1·3(C6F6) and 1·2TCB, respectively, which display different colors and stacking patterns despite similar structural motifs. Comprehensive analysis using X-ray diffraction, combined with quantum theory of atoms-in-molecules (QTAIM), an independent gradient model based on Hirshfeld partition (IGMH), extended transition state natural orbital for chemical valence theory with charge displacement function (ETS-NOCV/CDF), many-body interaction analysis, and symmetry-adapted perturbation theory (SAPT), reveals fundamentally different interaction mechanisms. In 1·3(C6F6), the stacking is primarily governed by intermolecular polarization without significant charge transfer, with dispersion forces contributing approximately 70% of the attractive energy. In contrast, 1·2TCB exhibits pronounced charge transfer (35 me) and significant inductive components alongside dispersion forces, characteristic of π-hole interactions. This dichotomy in stacking behavior provides new insights into the nature of organic-inorganic planar assemblies and demonstrates that seemingly similar structural patterns can arise from distinctly different combinations of noncovalent forces, which is essential for rational crystal engineering of hybrid materials.
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Affiliation(s)
- Sergey V Baykov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
| | - Eugene A Katlenok
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
| | - Artem V Semenov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
| | - Svetlana O Baykova
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
| | - Vadim P Boyarskiy
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
| | - Nadezhda A Bokach
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russian Federation
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4
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Jing L, Li P, Li Z, Ma D, Hu J. Influence of π-π interactions on organic photocatalytic materials and their performance. Chem Soc Rev 2025; 54:2054-2090. [PMID: 39849932 DOI: 10.1039/d4cs00029c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2025]
Abstract
Currently, organic photocatalyst-based photocatalysis has garnered significant attention as an environmentally friendly and sustainable reaction system due to the preferable structural flexibility and adjustable optoelectronic features of organic photocatalysts. In addition, π-π interactions, as one of the common non-bonded interactions, play an important role in the structure and property adjustments of organic photocatalysts due to their unique advantages in modulating the electronic structure, facilitating charge migration, and influencing interfacial reactions. However, studies summarizing the relationship between the π-π interactions of organic photocatalysts and their photocatalytic performance are still rare. Therefore, in this review, we introduced the types of π-π interactions, characterization techniques, and different types of organic photocatalytic materials. Then, the influence of π-π interactions on photocatalysis and the modification strategies of π-π interactions were summarized. Finally, we discussed their influence on photocatalytic performance in different photocatalytic systems and analyzed the challenges and prospects associated with harnessing π-π interactions in photocatalysis. The review provides a clear map for understanding π-π interaction formation mechanism and its application in organic photocatalysts, offering useful guidance for researchers in this field.
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Affiliation(s)
- Liquan Jing
- Department of Chemical and Petroleum Engineering, University of Calgary, 2500 University Drive, NW, Calgary, Alberta T2N1N4, Canada.
| | - Pandeng Li
- Department of Chemical and Petroleum Engineering, University of Calgary, 2500 University Drive, NW, Calgary, Alberta T2N1N4, Canada.
| | - Zheng Li
- Department of Chemical and Petroleum Engineering, University of Calgary, 2500 University Drive, NW, Calgary, Alberta T2N1N4, Canada.
| | - Dongling Ma
- Institut National de la Recherche Scientifique (INRS), Centre Énergie Materiaux et Télécommunications, 1650 Boulevard Lionel-Boulet, Varennes, Québec J3X1S2, Canada.
| | - Jinguang Hu
- Department of Chemical and Petroleum Engineering, University of Calgary, 2500 University Drive, NW, Calgary, Alberta T2N1N4, Canada.
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5
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Kandemir D, Van Puyvelde P, Ginzburg A. Upcycling Humins via Esterification Reactions of Hydroxyl Groups: From Functional Powders to PLA Foams and Compatibilized Blends. CHEMSUSCHEM 2024; 17:e202400403. [PMID: 38801412 DOI: 10.1002/cssc.202400403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 05/25/2024] [Accepted: 05/27/2024] [Indexed: 05/29/2024]
Abstract
The valorization of humins side streams from bio-refineries holds significant economic and sustainability potential. One plausible strategy involves using them as building blocks to create new materials. However, humins pose conceptual challenges in their natural state due to their high viscosity, processing difficulties, and temperature sensitivity. This article presents a synthetic strategy for modifying humins properties to make them thermally stable and processable. Employing a sequence of esterification reactions and varying the reagent steric length, we showcase the selective transformation of humins into thermally-stable fine powders and low-viscosity liquids. We extend this approach by reacting humins with polyesters such as polylactic acids and polycaprolactone. In particular, we detail a one-pot single-step synthesis of micro-phase separated compatibilized blends of polylactic acid and humins capped with the polylactic acid arms. Processed via solution-casting, the obtained materials behave as high-strength thermoplastic elastomers having uniform foam morphologies and material characteristics superior to the pure polylactic acid. By varying the content of D-enantiomers, we demonstrate an additional possibility of manipulating the cellular structures of the foams. Finally, we provide a solution to product circularity by reporting a dissolution recycling method.
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Affiliation(s)
- Dilhan Kandemir
- Department of Chemical Engineering, Soft Matter, Rheology and Technology, KU Leuven, Wetenschapspark 27, 3590, Diepenbeek, Belgium
| | - Peter Van Puyvelde
- Department of Chemical Engineering, Soft Matter, Rheology and Technology, KU Leuven, Celestijnenlaan 200J, 3001, Heverlee, Belgium
| | - Anton Ginzburg
- Department of Chemical Engineering, Soft Matter, Rheology and Technology, KU Leuven, Wetenschapspark 27, 3590, Diepenbeek, Belgium
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Liu T, Yin H, Hu Q, Dong X, Xin B, Wu Y, Hu X, Yan W, Li Z. Small Molecule Compound DHPA Screened by Computer-Aided Drug Design and Molecular Dynamics Simulation Inhibits Neuroblastoma Cell Proliferation by Targeting TrkB. ACS OMEGA 2024; 9:42227-42244. [PMID: 39431081 PMCID: PMC11483404 DOI: 10.1021/acsomega.4c04528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 09/20/2024] [Accepted: 09/26/2024] [Indexed: 10/22/2024]
Abstract
Neuroblastoma (NB) is a rare and malignant pediatric solid tumor. Due to its heterogeneity, it poses significant challenges for treatment, resulting in a high mortality rate. This study aimed to identify new therapeutic drugs by modeling the TrkB receptor from PDB 4AT5 and conducting virtual screening of compounds from the YaTCM database (containing 47,696 compounds derived from 6220 Traditional Chinese Medicines). The screening utilized the E-pharmacophore approach to select compounds with potential binding affinity to TrkB. The binding abilities of these compounds were tested through molecular dynamics simulations, stretch dynamics simulations, and US simulations. Among the top 11 optimized hit compounds, DHPA and 3″-demethylhexahydrocurcumin are prominent. Further simulations reveal that they form stable receptor-ligand binary complexes with TrkB. In subsequent in vitro cell experiments, 3″-demethylhexahydrocurcumin is eliminated due to its high IC50 for killing NB cells. Low concentrations of DHPA can significantly kill NB cells. Additionally, DHPA can inhibit the expression of TrkB, the activation of TrkB's downstream signaling pathways, and affect the thermal stability of TrkB protein and its response to streptase protease degradation. DHPA may be a potential TrkB inhibitor.
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Affiliation(s)
- Tianyi Liu
- Department
of Pharmacy, Dalian Women and Children’s
Medical Group, Dalian, Liaoning 116012, China
| | - Hongli Yin
- Institute
of Pediatric Research, Children’s
Hospital of Soochow University, Suzhou 215025, China
| | - Qingyang Hu
- College
of Pharmacy, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Xue Dong
- College
of Pharmacy, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Bin Xin
- College
of Pharmacy, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Yue Wu
- College
of Pharmacy, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Xuejiao Hu
- College
of Pharmacy, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Wenxin Yan
- College
of Pharmacy, Dalian Medical University, Dalian, Liaoning 116044, China
| | - Zhong Li
- Department
of Pharmacy, Dalian Women and Children’s
Medical Group, Dalian, Liaoning 116012, China
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7
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Chao YH, Jamwal P, Ananda Rao G, Gurubrahamam R, Chen K. Chiral Spirophosphoric-Acid-Catalyzed Divergent Vinylogous Mannich and aza-Friedel-Crafts Reactions of 2-Methoxyfuran. Org Lett 2024; 26:4938-4944. [PMID: 38838351 DOI: 10.1021/acs.orglett.4c01458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
The first enantioselective vinylogous Mannich reaction is developed using 2-methoxyfuran under chiral spirophosphoric acid catalysis. The strategy involves 4-isoxazoline derivatives as cyclic ketimine surrogates and provides γ-butenolide scaffolds (up to 97% ee and >20:1 dr). The mechanistic investigations suggest that an in situ generated water molecule plays a crucial role in delivering γ-butenolide, while the use of molecular sieves delivers aza-Friedel-Crafts products. The synthetic utility of γ-butenolide is shown toward obtaining piperidone skeleton via a lactone-lactam rearrangement.
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Affiliation(s)
- Yi-Han Chao
- Department of Chemistry, National Taiwan Normal University, Taipei, Taiwan 11677
| | - Paru Jamwal
- Department of Chemistry, Indian Institute of Technology Jammu, Jagti, Jammu and Kashmir 181221, India
| | - Gunda Ananda Rao
- Department of Chemistry, National Taiwan Normal University, Taipei, Taiwan 11677
| | - Ramani Gurubrahamam
- Department of Chemistry, Indian Institute of Technology Jammu, Jagti, Jammu and Kashmir 181221, India
| | - Kwunmin Chen
- Department of Chemistry, National Taiwan Normal University, Taipei, Taiwan 11677
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8
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Matharu AS, Dhareshwar SS, Cao YJ. A Rapid 3-Day Excipient Screening Methodology and its Application in Identifying Chemical Stabilizers for Solid Formulations with Mixed Mechanisms of Degradation. AAPS PharmSciTech 2024; 25:12. [PMID: 38182862 DOI: 10.1208/s12249-023-02730-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 12/19/2023] [Indexed: 01/07/2024] Open
Abstract
This study outlines a practical approach for assessing chemical instability by heating the drug-excipient binary mixtures or multi-excipient formulations at 75°C for 3 days before characterization. Differentiating itself from other excipient compatibility methods, our methodology necessitates a saturated aqueous slurry rather than arbitrarily fixed water content. This allows bulk and surface water in the excipient to contribute to drug degradation. The synergistic impact of surface water and elevated temperature expedites degradation kinetics, resulting in accelerated data generation. Among excipient compatibility methods available, our method is quantitative and merges with traditionally used methodologies. The devised nomograph enables extrapolation of shelf life at 20°C from experimental data obtained at 75°C. This methodology also helped identify stabilizers for the drug NVS-1 where traditional excipient compatibility programs had failed. Incorporation of monovalent salts, such as sodium/potassium chloride and sodium bicarbonate at 5% w/w, significantly enhanced the chemical stability of NVS-1, ensuring stable tablet formulations. Our hypothesis posits that stabilization is due to increased ionic strength in the slurry, which stabilizes an induced dipole within the polar NVS-1 drug. Additionally, the presence of ions in the moisture layer is anticipated to stabilize π-π stacking of two planar aromatic NVS-1 molecules. The expedited generation of experimental data allowed the identification of inorganic salts to supplement a standard excipient compatibility screening panel. Considering the economic implications of stability testing methodologies in effort, cost, and duration, a faster turnaround in chemical stability data enhances formulation selection. This ultimately facilitates the development of drug formulations with greater efficiency without delays.
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Affiliation(s)
- Amol S Matharu
- Technical Research and Development, Novartis Pharmaceuticals Corporation, East Hanover, New Jersey, 07936, USA
- Falcon Sterile Automation Inc., East Windsor, New Jersey, 08512, USA
| | - Sundeep S Dhareshwar
- Global Program Management, Novartis Pharmaceuticals Corporation, East Hanover, New Jersey, 07936, USA.
| | - Yu Jade Cao
- Technical Research and Development, Novartis Pharmaceuticals Corporation, East Hanover, New Jersey, 07936, USA
- Jade Pharma Consulting LLC, 3 Franklin Ct., Montville, New Jersey, 07045, USA
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Prus B, Cyrański MK, Boese R, Zachara J, Dobrzycki Ł. Hydrogen-Bonding Motifs in Adducts of Allylamine with the 10 Simplest n-Alcohols: Single-Crystal X-ray Diffraction Studies and Computational Analysis. CRYSTAL GROWTH & DESIGN 2022; 22:6405-6417. [PMID: 36345387 PMCID: PMC9635617 DOI: 10.1021/acs.cgd.2c00316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Revised: 09/12/2022] [Indexed: 06/16/2023]
Abstract
In this paper, we analyzed the homologous series of 10 allylamine adducts with n-alcohols from methanol to decanol. These are the first adduct structures containing aliphatic n-alcohols and an aliphatic amine as co-formers. While all of the ingredients are liquids under ambient conditions, the phases were synthesized with the use of the in situ crystallization technique assisted by IR laser-focused radiation at atmospheric pressure. The structures were characterized by single-crystal X-ray diffraction. All of the phases contain the amine and alcohol in a 1:1 ratio. The architecture of the structures, based on hydrogen-bonding interactions between NH2 and OH moieties, depends on the size of the alcohol and changes in a systematic way. The three smallest alcohol adducts contain centrosymmetric layers of molecules of the L4(4)8(8) type. The next four alcohol adducts have the T4(2) topology. The structures with the biggest alcohols contain non-centrosymmetric L6(6) layers. The structural investigations were supported by periodic DFT calculations at the B3LYP/pobTZVP level. The cohesive and adhesive energies made up of layer (E lbe) and ribbon (E rbe) binding energies were used to predict which type of architecture can be formed. The thermal stabilities of the adducts correlate with the melting points of the co-forming alcohols, with no evident relation to the adduct architecture.
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Affiliation(s)
- Bernadeta Prus
- Laboratory
of Advanced Crystal Engineering, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland
- Faculty
of Chemistry, Warsaw University of Technology, ul. Noakowskiego 3, 00-664Warsaw, Poland
| | - Michał K. Cyrański
- Laboratory
of Advanced Crystal Engineering, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland
| | - Roland Boese
- Laboratory
of Advanced Crystal Engineering, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland
| | - Janusz Zachara
- Faculty
of Chemistry, Warsaw University of Technology, ul. Noakowskiego 3, 00-664Warsaw, Poland
| | - Łukasz Dobrzycki
- Laboratory
of Advanced Crystal Engineering, Faculty of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089Warsaw, Poland
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Kazachenko AS, Issaoui N, Sagaama A, Malyar YN, Al-Dossary O, Bousiakou LG, Kazachenko AS, Miroshnokova AV, Xiang Z. Hydrogen bonds interactions in biuret-water clusters: FTIR, X-ray diffraction, AIM, DFT, RDG, ELF, NLO analysis. JOURNAL OF KING SAUD UNIVERSITY - SCIENCE 2022; 34:102350. [DOI: 10.1016/j.jksus.2022.102350] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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11
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Housecroft CE. What Goes in Must Come out: The Story of Uric Acid. Chimia (Aarau) 2021; 75:891-893. [PMID: 34728021 DOI: 10.2533/chimia.2021.891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Birds and reptiles convert waste ammonia into uric acid, while mammals excrete urea, with only small amounts of uric acid ending up in urine. This column explores the varying roles of uric acid and important calcium and sodium salts, and introduces π-stacking interactions in solid-state structures.
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Affiliation(s)
- Catherine E Housecroft
- Department of Chemistry, University of Basel, BPR 1096, Mattenstrasse 24a, CH-4058 Basel;,
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12
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Mooibroek TJ. DFT and IsoStar Analyses to Assess the Utility of σ- and π-Hole Interactions for Crystal Engineering. Chemphyschem 2021; 22:141-153. [PMID: 33241585 PMCID: PMC7898519 DOI: 10.1002/cphc.202000927] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 11/25/2020] [Indexed: 11/25/2022]
Abstract
The interpretation of 36 charge neutral 'contact pairs' from the IsoStar database was supported by DFT calculations of model molecules 1-12, and bimolecular adducts thereof. The 'central groups' are σ-hole donors (H2 O and aromatic C-I), π-hole donors (R-C(O)Me, R-NO2 and R-C6 F5 ) and for comparison R-C6 H5 (R=any group or atom). The 'contact groups' are hydrogen bond donors X-H (X=N, O, S, or R2 C, or R3 C) and lone-pair containing fragments (R3 C-F, R-C≡N and R2 C=O). Nearly all the IsoStar distributions follow expectations based on the electrostatic potential of the 'central-' and 'contact group'. Interaction energies (ΔEBSSE ) are dominated by electrostatics (particularly between two polarized molecules) or dispersion (especially in case of large contact area). Orbital interactions never dominate, but could be significant (∼30 %) and of the n/π→σ*/π* kind. The largest degree of directionality in the IsoStar plots was typically observed for adducts more stable than ΔEBSSE ≈-4 kcal⋅mol-1 , which can be seen as a benchmark-value for the utility of an interaction in crystal engineering. This benchmark could be met with all the σ- and π-hole donors studied.
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Affiliation(s)
- Tiddo Jonathan Mooibroek
- van ‘t Hoff Institute for Molecular SciencesUniversiteit van Amsterdam, Science Park 9041098 XHAmsterdamThe Netherlands
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