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For: Laqua H, Dietschreit JCB, Kussmann J, Ochsenfeld C. Accelerating Hybrid Density Functional Theory Molecular Dynamics Simulations by Seminumerical Integration, Resolution-of-the-Identity Approximation, and Graphics Processing Units. J Chem Theory Comput 2022;18:6010-6020. [PMID: 36136665 DOI: 10.1021/acs.jctc.2c00509] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Łach Ł. Phase Stability and Transitions in High-Entropy Alloys: Insights from Lattice Gas Models, Computational Simulations, and Experimental Validation. ENTROPY (BASEL, SWITZERLAND) 2025;27:464. [PMID: 40422419 DOI: 10.3390/e27050464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 04/09/2025] [Accepted: 04/23/2025] [Indexed: 05/28/2025]
2
Jiao S, Wan L, Li J, Gao J, Qin X, Hu W, Yang J. Projected Wave Function Extrapolation Scheme to Accelerate Plane-Wave Hybrid Functional-Based Born-Oppenheimer Molecular Dynamics Simulations. J Phys Chem A 2025;129:1741-1756. [PMID: 39885685 DOI: 10.1021/acs.jpca.4c06241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2025]
3
Kussmann J, Lemke Y, Weinbrenner A, Ochsenfeld C. A Constraint-Based Orbital-Optimized Excited State Method (COOX). J Chem Theory Comput 2024;20:8461-8473. [PMID: 39345090 PMCID: PMC11465468 DOI: 10.1021/acs.jctc.4c00467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 08/27/2024] [Accepted: 08/27/2024] [Indexed: 10/01/2024]
4
Pöverlein MC, Hulm A, Dietschreit JCB, Kussmann J, Ochsenfeld C, Kaila VRI. QM/MM Free Energy Calculations of Long-Range Biological Protonation Dynamics by Adaptive and Focused Sampling. J Chem Theory Comput 2024;20:5751-5762. [PMID: 38718352 DOI: 10.1021/acs.jctc.4c00199] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/10/2024]
5
Szántó JK, Dietschreit JCB, Shein M, Schütz AK, Ochsenfeld C. Systematic QM/MM Study for Predicting 31P NMR Chemical Shifts of Adenosine Nucleotides in Solution and Stages of ATP Hydrolysis in a Protein Environment. J Chem Theory Comput 2024;20:2433-2444. [PMID: 38497488 DOI: 10.1021/acs.jctc.3c01280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2024]
6
Stan-Bernhardt A, Glinkina L, Hulm A, Ochsenfeld C. Exploring Chemical Space Using Ab Initio Hyperreactor Dynamics. ACS CENTRAL SCIENCE 2024;10:302-314. [PMID: 38435517 PMCID: PMC10906254 DOI: 10.1021/acscentsci.3c01403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 12/20/2023] [Accepted: 12/21/2023] [Indexed: 03/05/2024]
7
Hulm A, Ochsenfeld C. Improved Sampling of Adaptive Path Collective Variables by Stabilized Extended-System Dynamics. J Chem Theory Comput 2023;19:9202-9210. [PMID: 38078670 PMCID: PMC10753802 DOI: 10.1021/acs.jctc.3c00938] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 11/08/2023] [Accepted: 11/08/2023] [Indexed: 12/27/2023]
8
Di Felice R, Mayes ML, Richard RM, Williams-Young DB, Chan GKL, de Jong WA, Govind N, Head-Gordon M, Hermes MR, Kowalski K, Li X, Lischka H, Mueller KT, Mutlu E, Niklasson AMN, Pederson MR, Peng B, Shepard R, Valeev EF, van Schilfgaarde M, Vlaisavljevich B, Windus TL, Xantheas SS, Zhang X, Zimmerman PM. A Perspective on Sustainable Computational Chemistry Software Development and Integration. J Chem Theory Comput 2023;19:7056-7076. [PMID: 37769271 PMCID: PMC10601486 DOI: 10.1021/acs.jctc.3c00419] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Indexed: 09/30/2023]
9
Williams-Young DB, Asadchev A, Popovici DT, Clark D, Waldrop J, Windus TL, Valeev EF, de Jong WA. Distributed memory, GPU accelerated Fock construction for hybrid, Gaussian basis density functional theory. J Chem Phys 2023;158:234104. [PMID: 37326157 DOI: 10.1063/5.0151070] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Accepted: 05/26/2023] [Indexed: 06/17/2023]  Open
10
Csóka J, Kállay M. Analytic gradients for local density fitting Hartree-Fock and Kohn-Sham methods. J Chem Phys 2023;158:024110. [PMID: 36641408 DOI: 10.1063/5.0131683] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
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