1
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Baerends EJ, Aguirre NF, Austin ND, Autschbach J, Bickelhaupt FM, Bulo R, Cappelli C, van Duin ACT, Egidi F, Fonseca Guerra C, Förster A, Franchini M, Goumans TPM, Heine T, Hellström M, Jacob CR, Jensen L, Krykunov M, van Lenthe E, Michalak A, Mitoraj MM, Neugebauer J, Nicu VP, Philipsen P, Ramanantoanina H, Rüger R, Schreckenbach G, Stener M, Swart M, Thijssen JM, Trnka T, Visscher L, Yakovlev A, van Gisbergen S. The Amsterdam Modeling Suite. J Chem Phys 2025; 162:162501. [PMID: 40260801 DOI: 10.1063/5.0258496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 03/28/2025] [Indexed: 04/24/2025] Open
Abstract
In this paper, we present the Amsterdam Modeling Suite (AMS), a comprehensive software platform designed to support advanced molecular and materials simulations across a wide range of chemical and physical systems. AMS integrates cutting-edge quantum chemical methods, including Density Functional Theory (DFT) and time-dependent DFT, with molecular mechanics, fluid thermodynamics, machine learning techniques, and more, to enable multi-scale modeling of complex chemical systems. Its design philosophy allows for seamless coupling between components, facilitating simulations that range from small molecules to complex biomolecular and solid-state systems, making it a versatile tool for tackling interdisciplinary challenges, both in industry and in academia. The suite also emphasizes user accessibility, with an intuitive graphical interface, extensive scripting capabilities, and compatibility with high-performance computing environments.
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Affiliation(s)
- Evert Jan Baerends
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Nestor F Aguirre
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Nick D Austin
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo State University of New York, Buffalo, New York 14260-3000, USA
| | - F Matthias Bickelhaupt
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
- Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
- Department of Chemical Sciences, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa
| | - Rosa Bulo
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- IMT School for Advanced Studies Lucca, Piazza San Francesco 19, I-55100 Lucca, Italy
| | - Adri C T van Duin
- Department of Mechanical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Franco Egidi
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Célia Fonseca Guerra
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Arno Förster
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Mirko Franchini
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Theodorus P M Goumans
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Thomas Heine
- Faculty of Chemistry and Food Chemistry, TU Dresden, Bergstraße 66c, 01069 Dresden, Germany
| | - Matti Hellström
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Christoph R Jacob
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Lasse Jensen
- Department of Chemistry, The Pennsylvania State University, 104 Benkovic Building, University Park, Pennsylvania 16802, USA
| | - Mykhaylo Krykunov
- Insilico Medicine AI Limited, Level 6, Unit 08, Block A, IRENA HQ Building, Masdar City, P.O. Box 145748, Abu Dhabi, United Arab Emirates
| | - Erik van Lenthe
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Artur Michalak
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Mariusz M Mitoraj
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Johannes Neugebauer
- Universität Münster, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Corrensstraße 36, 48149 Münster, Germany
| | | | - Pier Philipsen
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Harry Ramanantoanina
- Department Chemie, Johannes Gutenberg-Universität, Fritz-Strassmann Weg 2, 55128 Mainz, Germany
| | - Robert Rüger
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Georg Schreckenbach
- Department of Chemistry, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
| | - Mauro Stener
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli studi di Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Marcel Swart
- ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain
- IQCC and Department Química, Universitat de Girona, Campus Montilivi, 17003 Girona, Spain
| | - Jos M Thijssen
- Kavli Institute of Nanoscience, Delft University of Technology, 2628 CJ Delft, The Netherlands
| | - Tomáš Trnka
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Lucas Visscher
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Alexei Yakovlev
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Stan van Gisbergen
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
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2
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Förster A. Beyond Quasi-Particle Self-Consistent GW for Molecules with Vertex Corrections. J Chem Theory Comput 2025; 21:1709-1721. [PMID: 39930976 DOI: 10.1021/acs.jctc.4c01639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
Abstract
We introduce the ΣBSE@LBSE self-energy in the quasi-particle self-consistent GW (qsGW) framework (qsΣBSE@LBSE). Here, L is the two-particle response function, which we calculate by solving the Bethe-Salpeter equation with the static, first-order GW kernel. The same kernel is added to Σ directly. For a set of medium organic molecules, we show that including the vertex both in L and Σ is crucial. This approach retains the good performance of qsGW for predicting first ionization potentials and fundamental gaps, while it greatly improves the description of electron affinities. Its good performance places qsΣBSE@LBSE among the best-performing electron propagator methods for charged excitations. Adding the vertex in L only, as commonly done in the solid-state community, leads to devastating results for electron affinities and fundamental gaps. We also test the performance of BSE@qsGW and qsΣBSE@LBSE for neutral charge-transfer excitation and find both methods to perform similar. We conclude that ΣBSE@LBSE is a promising approximation to the electronic self-energy beyond GW. We hope that future research on dynamical vertex effects, second-order vertex corrections, and full self-consistency will improve the accuracy of this method, both for charged and neutral excitation energies.
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Affiliation(s)
- Arno Förster
- Theoretical Chemistry, Vrije Universiteit Amsterdam, De Boelelaan 1105, Amsterdam 1081 HV, the Netherlands
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3
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Loos PF, Marie A, Ammar A. Cumulant Green's function methods for molecules. Faraday Discuss 2024; 254:240-260. [PMID: 39073086 DOI: 10.1039/d4fd00037d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
The cumulant expansion of the Green's function is a computationally efficient beyond-GW approach renowned for its significant enhancement of satellite features in materials. In contrast to the ubiquitous GW approximation of many-body perturbation theory, ab initio cumulant expansions performed on top of GW (GW + C) have demonstrated the capability to handle multi-particle processes by incorporating higher-order correlation effects or vertex corrections, yielding better agreements between experiment and theory for satellite structures. While widely employed in condensed matter physics, very few applications of GW + C have been published on molecular systems. Here, we assess the performance of this scheme on a series of 10-electron molecular systems (Ne, HF, H2O, NH3, and CH4) where full configuration interaction estimates of the outer-valence quasiparticle and satellite energies are available.
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Affiliation(s)
- Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
| | - Antoine Marie
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
| | - Abdallah Ammar
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
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Knysh I, Lipparini F, Blondel A, Duchemin I, Blase X, Loos PF, Jacquemin D. Reference CC3 Excitation Energies for Organic Chromophores: Benchmarking TD-DFT, BSE/ GW, and Wave Function Methods. J Chem Theory Comput 2024. [PMID: 39237472 DOI: 10.1021/acs.jctc.4c00906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/07/2024]
Abstract
To expand the QUEST database of highly accurate vertical transition energies, we consider a series of large organic chromogens ubiquitous in dye chemistry, such as anthraquinone, azobenzene, BODIPY, and naphthalimide. We compute, at the CC3 level of theory, the singlet and triplet vertical transition energies associated with the low-lying excited states. This leads to a collection of more than 120 new highly accurate excitation energies. For several singlet transitions, we have been able to determine CCSDT transition energies with a compact basis set, finding minimal deviations from the CC3 values for most states. Subsequently, we employ these reference values to benchmark a series of lower-order wave function approaches, including the popular ADC(2) and CC2 schemes, as well as time-dependent density-functional theory (TD-DFT), both with and without applying the Tamm-Dancoff approximation (TDA). At the TD-DFT level, we evaluate a large panel of global, range-separated, local, and double hybrid functionals. Additionally, we assess the performance of the Bethe-Salpeter equation (BSE) formalism relying on both G0W0 and evGW quasiparticle energies evaluated from various starting points. It turns out that CC2 and ADC(2.5) are the most accurate models among those with respective O ( N 5 ) and O ( N 6 ) scalings with system size. In contrast, CCSD does not outperform CC2. The best performing exchange-correlation functionals include BMK, M06-2X, M06-SX, CAM-B3LYP, ωB97X-D, and LH20t, with average deviations of approximately 0.20 eV or slightly below. Errors on vertical excitation energies can be further reduced by considering double hybrids. Both SOS-ωB88PP86 and SOS-ωPBEPP86 exhibit particularly attractive performances with overall quality on par with CC2, whereas PBE0-DH and PBE-QIDH are only slightly less efficient. BSE/evGW calculations based on Kohn-Sham starting points have been found to be particularly effective for singlet transitions, but much less for their triplet counterparts.
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Affiliation(s)
- Iryna Knysh
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale, University of Pisa, Via Moruzzi 3, 56124 Pisa, Italy
| | - Aymeric Blondel
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Ivan Duchemin
- Université Grenoble Alpes, CEA, IRIG-MEM-L Sim, 38054 Grenoble, France
| | - Xavier Blase
- Université Grenoble Alpes, CNRS, Institut NEEL, F-38042 Grenoble, France
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, 31062 Toulouse, France
| | - Denis Jacquemin
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
- Institut Universitaire de France (IUF), F-75005 Paris, France
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Marie A, Loos PF. Reference Energies for Valence Ionizations and Satellite Transitions. J Chem Theory Comput 2024; 20:4751-4777. [PMID: 38776293 PMCID: PMC11171335 DOI: 10.1021/acs.jctc.4c00216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 04/10/2024] [Accepted: 04/11/2024] [Indexed: 05/24/2024]
Abstract
Upon ionization of an atom or a molecule, another electron (or more) can be simultaneously excited. These concurrently generated states are called "satellites" (or shakeup transitions) as they appear in ionization spectra as higher-energy peaks with weaker intensity and larger width than the main peaks associated with single-particle ionizations. Satellites, which correspond to electronically excited states of the cationic species, are notoriously challenging to model using conventional single-reference methods due to their high excitation degree compared to the neutral reference state. This work reports 42 satellite transition energies and 58 valence ionization potentials (IPs) of full configuration interaction quality computed in small molecular systems. Following the protocol developed for the quest database [Véril, M.; Scemama, A.; Caffarel, M.; Lipparini, F.; Boggio-Pasqua, M.; Jacquemin, D.; and Loos, P.-F. Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2021, 11, e1517], these reference energies are computed using the configuration interaction using a perturbative selection made iteratively (CIPSI) method. In addition, the accuracy of the well-known coupled-cluster (CC) hierarchy (CC2, CCSD, CC3, CCSDT, CC4, and CCSDTQ) is gauged against these new accurate references. The performances of various approximations based on many-body Green's functions (GW, GF2, and T-matrix) for IPs are also analyzed. Their limitations in correctly modeling satellite transitions are discussed.
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Affiliation(s)
- Antoine Marie
- Laboratoire de Chimie et Physique
Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, Toulouse 31062, France
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique
Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, Toulouse 31062, France
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6
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Bruneval F, Förster A. Fully Dynamic G3 W2 Self-Energy for Finite Systems: Formulas and Benchmark. J Chem Theory Comput 2024; 20:3218-3230. [PMID: 38603811 DOI: 10.1021/acs.jctc.4c00090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2024]
Abstract
Over the years, Hedin's GW self-energy has been proven to be a rather accurate and simple approximation to evaluate electronic quasiparticle energies in solids and in molecules. Attempts to improve over the simple GW approximation, the so-called vertex corrections, have been constantly proposed in the literature. Here, we derive, analyze, and benchmark the complete second-order term in the screened Coulomb interaction W for finite systems. This self-energy named G3W2 contains all the possible time orderings that combine 3 Green's functions G and 2 dynamic W. We present the analytic formula and its imaginary frequency counterpart, with the latter allowing us to treat larger molecules. The accuracy of the G3W2 self-energy is evaluated on well-established benchmarks (GW100, Acceptor 24, and Core 65) for valence and core quasiparticle energies. Its link with the simpler static approximation, named SOSEX for static screened second-order exchange, is analyzed, which leads us to propose a more consistent approximation named 2SOSEX. In the end, we find that neither the G3W2 self-energy nor any of the investigated approximations to it improve over one-shot G0W0 with a good starting point. Only quasi-particle self-consistent GW HOMO energies are slightly improved by addition of the G3W2 self-energy correction. We show that this is due to the self-consistent update of the screened Coulomb interaction, leading to an overall sign change of the vertex correction to the frontier quasiparticle energies.
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Affiliation(s)
- Fabien Bruneval
- Université Paris-Saclay, CEA, Service de recherche en Corrosion et Comportement des Matériaux, SRMP, 91191 Gif-sur-Yvette, France
| | - Arno Förster
- Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1108, 1081 HZ Amsterdam, The Netherlands
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7
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Amblard D, Blase X, Duchemin I. Static versus dynamically polarizable environments within the many-body GW formalism. J Chem Phys 2024; 160:154104. [PMID: 38624115 DOI: 10.1063/5.0203637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 03/28/2024] [Indexed: 04/17/2024] Open
Abstract
Continuum- or discrete-polarizable models for the study of optoelectronic processes in embedded subsystems rely mostly on the restriction of the surrounding electronic dielectric response to its low frequency limit. Such a description hinges on the assumption that the electrons in the surrounding medium react instantaneously to any excitation in the central subsystem, thus treating the environment in the adiabatic limit. Exploiting a recently developed embedded GW formalism with an environment described at the fully ab initio level, we assess the merits of the adiabatic limit with respect to an environment where the full dynamics of the dielectric response are considered. Furthermore, we show how to properly take the static limit of the environment's susceptibility by introducing the so-called Coulomb-hole and screened-exchange contributions to the reaction field. As a first application, we consider a C60 molecule at the surface of a C60 crystal, namely, a case where the dynamics of the embedded and embedding subsystems are similar. The common adiabatic assumption, when properly treated, generates errors below 10% on the polarization energy associated with frontier energy levels and associated energy gaps. Finally, we consider a water molecule inside a metallic nanotube, the worst case for the environment's adiabatic limit. The error on the gap polarization energy remains below 10%, even though the error on the frontier orbital polarization energies can reach a few tenths of an electronvolt.
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Affiliation(s)
- David Amblard
- University Grenoble Alpes, CNRS, Inst NEEL, F-38042 Grenoble, France
| | - Xavier Blase
- University Grenoble Alpes, CNRS, Inst NEEL, F-38042 Grenoble, France
| | - Ivan Duchemin
- University Grenoble Alpes, CEA, IRIG-MEM-L_Sim, 38054 Grenoble, France
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8
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Daas KJ, Kooi DP, Peters NC, Fabiano E, Della Sala F, Gori-Giorgi P, Vuckovic S. Regularized and Opposite Spin-Scaled Functionals from Møller-Plesset Adiabatic Connection─Higher Accuracy at Lower Cost. J Phys Chem Lett 2023; 14:8448-8459. [PMID: 37721318 DOI: 10.1021/acs.jpclett.3c01832] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
Noncovalent interactions (NCIs) play a crucial role in biology, chemistry, material science, and everything in between. To improve pure quantum-chemical simulations of NCIs, we propose a methodology for constructing approximate correlation energies by combining an interpolation along the Møller-Plesset adiabatic connection (MP AC) with a regularization and spin-scaling strategy applied to MP2 correlation energies. This combination yields cosκos-SPL2, which exhibits superior accuracy for NCIs compared to any of the individual strategies. With the N4 formal scaling, cosκos-SPL2 is competitive or often outperforms more expensive dispersion-corrected double hybrids for NCIs. The accuracy of cosκos-SPL2 particularly shines for anionic halogen bonded complexes, where it surpasses standard dispersion-corrected DFT by a factor of 3 to 5.
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Affiliation(s)
- Kimberly J Daas
- Department of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
| | - Derk P Kooi
- Department of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
- Microsoft Research AI4Science, Evert van de Beekstraat 354, 1118CZ Schiphol, The Netherlands
| | - Nina C Peters
- Department of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
| | - Eduardo Fabiano
- Institute for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
| | - Fabio Della Sala
- Institute for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
| | - Paola Gori-Giorgi
- Department of Chemistry & Pharmaceutical Sciences and Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands
- Microsoft Research AI4Science, Evert van de Beekstraat 354, 1118CZ Schiphol, The Netherlands
| | - Stefan Vuckovic
- Department of Chemistry, Faculty of Science and Medicine, Université de Fribourg/Universität Freiburg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland
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