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For: Clark F, Robb GR, Cole DJ, Michel J. Automated Adaptive Absolute Binding Free Energy Calculations. J Chem Theory Comput 2024. [PMID: 39254715 PMCID: PMC11428140 DOI: 10.1021/acs.jctc.4c00806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/11/2024]
Number Cited by Other Article(s)
1
Koby SB, Gutkin E, Patel S, Kurnikova MG. Automated On-the-Fly Optimization of Resource Allocation for Efficient Free Energy Simulations. J Chem Inf Model 2025;65:4932-4951. [PMID: 40328725 PMCID: PMC12121625 DOI: 10.1021/acs.jcim.4c02107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Revised: 03/13/2025] [Accepted: 04/02/2025] [Indexed: 05/08/2025]
2
Li P, Pu T, Mei Y. FEP-SPell-ABFE: An Open-Source Automated Alchemical Absolute Binding Free-Energy Calculation Workflow for Drug Discovery. J Chem Inf Model 2025;65:2711-2721. [PMID: 40029615 DOI: 10.1021/acs.jcim.4c01986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2025]
3
Cree B, Bieniek MK, Amin S, Kawamura A, Cole DJ. Active learning driven prioritisation of compounds from on-demand libraries targeting the SARS-CoV-2 main protease. DIGITAL DISCOVERY 2025;4:438-450. [PMID: 39816163 PMCID: PMC11726688 DOI: 10.1039/d4dd00343h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Accepted: 01/08/2025] [Indexed: 01/18/2025]
4
Valsson Í, Warren MT, Deane CM, Magarkar A, Morris GM, Biggin PC. Narrowing the gap between machine learning scoring functions and free energy perturbation using augmented data. Commun Chem 2025;8:41. [PMID: 39922899 PMCID: PMC11807228 DOI: 10.1038/s42004-025-01428-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Accepted: 01/23/2025] [Indexed: 02/10/2025]  Open
5
Clark F, Cole DJ, Michel J. Robust Automated Truncation Point Selection for Molecular Simulations. J Chem Theory Comput 2025;21:88-101. [PMID: 39715001 PMCID: PMC11736681 DOI: 10.1021/acs.jctc.4c01359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Revised: 12/06/2024] [Accepted: 12/09/2024] [Indexed: 12/25/2024]
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