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For: Simm GN, Reiher M. Context-Driven Exploration of Complex Chemical Reaction Networks. J Chem Theory Comput 2017;13:6108-6119. [DOI: 10.1021/acs.jctc.7b00945] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Number Cited by Other Article(s)
1
Türtscher PL, Reiher M. Automated Microsolvation for Minimum Energy Path Construction in Solution. J Chem Theory Comput 2025. [PMID: 40434740 DOI: 10.1021/acs.jctc.5c00245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2025]
2
Lee K, Lee J, Park S, Kim WY. Facilitating Transition State Search with Minimal Conformational Sampling Using Reaction Graph. J Chem Theory Comput 2025;21:2487-2500. [PMID: 39998320 DOI: 10.1021/acs.jctc.4c01692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
3
Hashidzume A. The second wave of formose research. BBA ADVANCES 2025;7:100141. [PMID: 39974666 PMCID: PMC11835704 DOI: 10.1016/j.bbadva.2025.100141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 01/09/2025] [Accepted: 01/13/2025] [Indexed: 02/21/2025]  Open
4
Meissner JA, Meisner J. Acceleration of Diffusion in Ab Initio Nanoreactor Molecular Dynamics and Application to Hydrogen Sulfide Oxidation. J Chem Theory Comput 2025;21:218-229. [PMID: 39440718 DOI: 10.1021/acs.jctc.4c00826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
5
Kua J, Peña MT, Cotter SN, Leca J. Sulfur Analogs of the Core Formose Cycle: A Free Energy Map. Life (Basel) 2024;15:1. [PMID: 39859941 PMCID: PMC11766735 DOI: 10.3390/life15010001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 12/16/2024] [Accepted: 12/19/2024] [Indexed: 01/27/2025]  Open
6
Stuyver T. TS-tools: Rapid and automated localization of transition states based on a textual reaction SMILES input. J Comput Chem 2024;45:2308-2317. [PMID: 38850166 DOI: 10.1002/jcc.27374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 03/08/2024] [Accepted: 03/20/2024] [Indexed: 06/10/2024]
7
Kua J, Tripoli LP. Exploring the Core Formose Cycle: Catalysis and Competition. Life (Basel) 2024;14:933. [PMID: 39202675 PMCID: PMC11355428 DOI: 10.3390/life14080933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 07/10/2024] [Accepted: 07/19/2024] [Indexed: 09/03/2024]  Open
8
Csizi KS, Steiner M, Reiher M. Nanoscale chemical reaction exploration with a quantum magnifying glass. Nat Commun 2024;15:5320. [PMID: 38909029 PMCID: PMC11193806 DOI: 10.1038/s41467-024-49594-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Accepted: 06/04/2024] [Indexed: 06/24/2024]  Open
9
Weymuth T, Unsleber JP, Türtscher PL, Steiner M, Sobez JG, Müller CH, Mörchen M, Klasovita V, Grimmel SA, Eckhoff M, Csizi KS, Bosia F, Bensberg M, Reiher M. SCINE-Software for chemical interaction networks. J Chem Phys 2024;160:222501. [PMID: 38857173 DOI: 10.1063/5.0206974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 05/09/2024] [Indexed: 06/12/2024]  Open
10
Srinivasan K, Puliyanda A, Prasad V. Identification of Reaction Network Hypotheses for Complex Feedstocks from Spectroscopic Measurements with Minimal Human Intervention. J Phys Chem A 2024;128:4714-4729. [PMID: 38836378 DOI: 10.1021/acs.jpca.4c01592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
11
Steiner M, Reiher M. A human-machine interface for automatic exploration of chemical reaction networks. Nat Commun 2024;15:3680. [PMID: 38693117 PMCID: PMC11063077 DOI: 10.1038/s41467-024-47997-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 04/15/2024] [Indexed: 05/03/2024]  Open
12
Vadaddi SM, Zhao Q, Savoie BM. Graph to Activation Energy Models Easily Reach Irreducible Errors but Show Limited Transferability. J Phys Chem A 2024;128:2543-2555. [PMID: 38517281 DOI: 10.1021/acs.jpca.3c07240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2024]
13
Briš A, Baltussen MG, Tripodi GL, Huck WTS, Franceschi P, Roithová J. Direct Analysis of Complex Reaction Mixtures: Formose Reaction. Angew Chem Int Ed Engl 2024;63:e202316621. [PMID: 38100204 DOI: 10.1002/anie.202316621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Indexed: 12/31/2023]
14
Kim S, Woo J, Kim WY. Diffusion-based generative AI for exploring transition states from 2D molecular graphs. Nat Commun 2024;15:341. [PMID: 38184661 PMCID: PMC10771475 DOI: 10.1038/s41467-023-44629-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Accepted: 12/21/2023] [Indexed: 01/08/2024]  Open
15
Zhang Y, Xu C, Lan Z. Automated Exploration of Reaction Networks and Mechanisms Based on Metadynamics Nanoreactor Simulations. J Chem Theory Comput 2023. [PMID: 38031422 DOI: 10.1021/acs.jctc.3c00752] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2023]
16
Petrus E, Garay-Ruiz D, Reiher M, Bo C. Multi-Time-Scale Simulation of Complex Reactive Mixtures: How Do Polyoxometalates Form? J Am Chem Soc 2023;145:18920-18930. [PMID: 37496164 DOI: 10.1021/jacs.3c05514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
17
Xu R, Meisner J, Chang AM, Thompson KC, Martínez TJ. First principles reaction discovery: from the Schrodinger equation to experimental prediction for methane pyrolysis. Chem Sci 2023;14:7447-7464. [PMID: 37449065 PMCID: PMC10337770 DOI: 10.1039/d3sc01202f] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 06/02/2023] [Indexed: 07/18/2023]  Open
18
Toniato A, Unsleber JP, Vaucher AC, Weymuth T, Probst D, Laino T, Reiher M. Quantum chemical data generation as fill-in for reliability enhancement of machine-learning reaction and retrosynthesis planning. DIGITAL DISCOVERY 2023;2:663-673. [PMID: 37312681 PMCID: PMC10259370 DOI: 10.1039/d3dd00006k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Accepted: 03/09/2023] [Indexed: 06/15/2023]
19
Suzuki K, Kanno M, Koseki S, Kono H. A Structure-Based Gaussian Expansion for Quantum Reaction Dynamics in Molecules: Application to Hydrogen Tunneling in Malonaldehyde. J Phys Chem A 2023;127:4152-4165. [PMID: 37129441 DOI: 10.1021/acs.jpca.2c09088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
20
Zhao Q, Garimella SS, Savoie BM. Thermally Accessible Prebiotic Pathways for Forming Ribonucleic Acid and Protein Precursors from Aqueous Hydrogen Cyanide. J Am Chem Soc 2023;145:6135-6143. [PMID: 36883252 DOI: 10.1021/jacs.2c11857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
21
Concentration‐Flux‐Steered Mechanism Exploration with an Organocatalysis Application. Isr J Chem 2023. [DOI: 10.1002/ijch.202200123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
22
Unsleber JP, Liu H, Talirz L, Weymuth T, Mörchen M, Grofe A, Wecker D, Stein CJ, Panyala A, Peng B, Kowalski K, Troyer M, Reiher M. High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference validation. J Chem Phys 2023;158:084803. [PMID: 36859110 DOI: 10.1063/5.0136526] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]  Open
23
Mardyukov A, Wende RC, Schreiner PR. Matrix isolation and photorearrangement of cis- and trans-1,2-ethenediol to glycolaldehyde. Chem Commun (Camb) 2023;59:2596-2599. [PMID: 36753323 DOI: 10.1039/d2cc06331j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
24
Türtscher PL, Reiher M. Pathfinder─Navigating and Analyzing Chemical Reaction Networks with an Efficient Graph-Based Approach. J Chem Inf Model 2023;63:147-160. [PMID: 36515968 PMCID: PMC9832502 DOI: 10.1021/acs.jcim.2c01136] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Indexed: 12/15/2022]
25
Krep L, Schmalz F, Solbach F, Komissarov L, Nevolianis T, Kopp WA, Verstraelen T, Leonhard K. A Reactive Molecular Dynamics Study of Chlorinated Organic Compounds. Part II: A ChemTraYzer Study of Chlorinated Dibenzofuran Formation and Decomposition Processes. Chemphyschem 2022;24:e202200783. [PMID: 36511423 DOI: 10.1002/cphc.202200783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 12/09/2022] [Accepted: 12/12/2022] [Indexed: 12/14/2022]
26
Hashemi A, Bougueroua S, Gaigeot MP, Pidko EA. ReNeGate: A Reaction Network Graph-Theoretical Tool for Automated Mechanistic Studies in Computational Homogeneous Catalysis. J Chem Theory Comput 2022;18:7470-7482. [PMID: 36321652 DOI: 10.1021/acs.jctc.2c00404] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
27
Lavigne C, Gomes G, Pollice R, Aspuru-Guzik A. Guided discovery of chemical reaction pathways with imposed activation. Chem Sci 2022;13:13857-13871. [PMID: 36544742 PMCID: PMC9710306 DOI: 10.1039/d2sc05135d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 11/09/2022] [Indexed: 11/12/2022]  Open
28
Zhao Q, Savoie BM. Algorithmic Explorations of Unimolecular and Bimolecular Reaction Spaces. Angew Chem Int Ed Engl 2022;61:e202210693. [PMID: 36074520 PMCID: PMC9827825 DOI: 10.1002/anie.202210693] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Indexed: 01/12/2023]
29
Ismail I, Chantreau Majerus R, Habershon S. Graph-Driven Reaction Discovery: Progress, Challenges, and Future Opportunities. J Phys Chem A 2022;126:7051-7069. [PMID: 36190262 PMCID: PMC9574932 DOI: 10.1021/acs.jpca.2c06408] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 09/22/2022] [Indexed: 11/29/2022]
30
Unsleber JP, Grimmel SA, Reiher M. Chemoton 2.0: Autonomous Exploration of Chemical Reaction Networks. J Chem Theory Comput 2022;18:5393-5409. [PMID: 35926118 PMCID: PMC11516015 DOI: 10.1021/acs.jctc.2c00193] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Indexed: 11/28/2022]
31
Liu X, Wang W, Wright S, Doppelbauer M, Meijer G, Truppe S, PEREZ RIOS JESUS. The chemistry of AlF and CaF production in buffer gas sources. J Chem Phys 2022;157:074305. [DOI: 10.1063/5.0098378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
32
Ismail I, Robertson C, Habershon S. Successes and challenges in using machine-learned activation energies in kinetic simulations. J Chem Phys 2022;157:014109. [DOI: 10.1063/5.0096027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
33
Robinson WE, Daines E, van Duppen P, de Jong T, Huck WTS. Environmental conditions drive self-organization of reaction pathways in a prebiotic reaction network. Nat Chem 2022;14:623-631. [PMID: 35668214 DOI: 10.1038/s41557-022-00956-7] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Accepted: 04/26/2022] [Indexed: 11/09/2022]
34
Guan X, Das A, Stein CJ, Heidar-Zadeh F, Bertels L, Liu M, Haghighatlari M, Li J, Zhang O, Hao H, Leven I, Head-Gordon M, Head-Gordon T. A benchmark dataset for Hydrogen Combustion. Sci Data 2022;9:215. [PMID: 35581204 PMCID: PMC9114378 DOI: 10.1038/s41597-022-01330-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 04/20/2022] [Indexed: 11/21/2022]  Open
35
Zhao Q, Hsu HH, Savoie BM. Conformational Sampling for Transition State Searches on a Computational Budget. J Chem Theory Comput 2022;18:3006-3016. [PMID: 35403426 DOI: 10.1021/acs.jctc.2c00081] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
36
Krep L, Roy IS, Kopp W, Schmalz F, Huang C, Leonhard K. Efficient Reaction Space Exploration with ChemTraYzer-TAD. J Chem Inf Model 2022;62:890-902. [PMID: 35142513 DOI: 10.1021/acs.jcim.1c01197] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
37
Chen X, Liu M, Gao J. CARNOT: a Fragment-Based Direct Molecular Dynamics and Virtual-Reality Simulation Package for Reactive Systems. J Chem Theory Comput 2022;18:1297-1313. [PMID: 35129348 DOI: 10.1021/acs.jctc.1c01032] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
38
Garay-Ruiz D, Álvarez-Moreno M, Bo C, Martínez-Núñez E. New Tools for Taming Complex Reaction Networks: The Unimolecular Decomposition of Indole Revisited. ACS PHYSICAL CHEMISTRY AU 2022;2:225-236. [PMID: 36855573 PMCID: PMC9718323 DOI: 10.1021/acsphyschemau.1c00051] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
39
Steiner M, Reiher M. Autonomous Reaction Network Exploration in Homogeneous and Heterogeneous Catalysis. Top Catal 2022;65:6-39. [PMID: 35185305 PMCID: PMC8816766 DOI: 10.1007/s11244-021-01543-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/17/2021] [Indexed: 12/11/2022]
40
Abbott JW, Hanke F. Kinetically Corrected Monte Carlo-Molecular Dynamics Simulations of Solid Electrolyte Interphase Growth. J Chem Theory Comput 2022;18:925-934. [PMID: 35007421 DOI: 10.1021/acs.jctc.1c00921] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
41
Baiardi A, Grimmel SA, Steiner M, Türtscher PL, Unsleber JP, Weymuth T, Reiher M. Expansive Quantum Mechanical Exploration of Chemical Reaction Paths. Acc Chem Res 2022;55:35-43. [PMID: 34918903 DOI: 10.1021/acs.accounts.1c00472] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
42
Schmitz G, Yönder Ö, Schnieder B, Schmid R, Hättig C. An automatized workflow from molecular dynamic simulation to quantum chemical methods to identify elementary reactions and compute reaction constants. J Comput Chem 2021;42:2264-2282. [PMID: 34636424 DOI: 10.1002/jcc.26757] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
43
Sharma S, Arya A, Cruz R, Cleaves II HJ. Automated Exploration of Prebiotic Chemical Reaction Space: Progress and Perspectives. Life (Basel) 2021;11:1140. [PMID: 34833016 PMCID: PMC8624352 DOI: 10.3390/life11111140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 10/15/2021] [Accepted: 10/18/2021] [Indexed: 12/12/2022]  Open
44
Cazenille L, Baccouche A, Aubert-Kato N. Automated exploration of DNA-based structure self-assembly networks. ROYAL SOCIETY OPEN SCIENCE 2021;8:210848. [PMID: 34754499 PMCID: PMC8493194 DOI: 10.1098/rsos.210848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Accepted: 09/15/2021] [Indexed: 06/13/2023]
45
Automated Construction and Optimization Combined with Machine Learning to Generate Pt(II) Methane C–H Activation Transition States. Top Catal 2021. [DOI: 10.1007/s11244-021-01506-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
46
Martínez-Núñez E, Barnes GL, Glowacki DR, Kopec S, Peláez D, Rodríguez A, Rodríguez-Fernández R, Shannon RJ, Stewart JJP, Tahoces PG, Vazquez SA. AutoMeKin2021: An open-source program for automated reaction discovery. J Comput Chem 2021;42:2036-2048. [PMID: 34387374 DOI: 10.1002/jcc.26734] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 07/16/2021] [Accepted: 07/27/2021] [Indexed: 01/10/2023]
47
Xie X, Clark Spotte-Smith EW, Wen M, Patel HD, Blau SM, Persson KA. Data-Driven Prediction of Formation Mechanisms of Lithium Ethylene Monocarbonate with an Automated Reaction Network. J Am Chem Soc 2021;143:13245-13258. [PMID: 34379977 DOI: 10.1021/jacs.1c05807] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
48
Takahashi K, Satoshi M. Mining hydroformylation in complex reaction network via graph theory. RSC Adv 2021;11:23235-23240. [PMID: 35479801 PMCID: PMC9036754 DOI: 10.1039/d1ra03395f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 06/16/2021] [Indexed: 11/21/2022]  Open
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Xu J, Cao XM, Hu P. Perspective on computational reaction prediction using machine learning methods in heterogeneous catalysis. Phys Chem Chem Phys 2021;23:11155-11179. [PMID: 33972971 DOI: 10.1039/d1cp01349a] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Stuyver T, Shaik S. Promotion Energy Analysis Predicts Reaction Modes: Nucleophilic and Electrophilic Aromatic Substitution Reactions. J Am Chem Soc 2021;143:4367-4378. [PMID: 33689334 DOI: 10.1021/jacs.1c00307] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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