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For: Schilling M, Cunha RA, Luber S. Zooming in on the O–O Bond Formation—An Ab Initio Molecular Dynamics Study Applying Enhanced Sampling Techniques. J Chem Theory Comput 2020;16:2436-2449. [DOI: 10.1021/acs.jctc.9b01207] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Cascella M, Bore SL, Eisenstein O. The fellowship of the Grignard: 21st century computational tools for hundred-year-old chemistry. Chem Sci 2025;16:8196-8216. [PMID: 40308958 PMCID: PMC12039541 DOI: 10.1039/d5sc01078k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Accepted: 04/10/2025] [Indexed: 05/02/2025]  Open
2
Creazzo F, Sivula K, Luber S. DFT-metadynamics insights on the origin of the oxygen evolution kinetics at the (100)-WSe2 surface. iScience 2025;28:112045. [PMID: 40124514 PMCID: PMC11930373 DOI: 10.1016/j.isci.2025.112045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Revised: 01/02/2025] [Accepted: 02/13/2025] [Indexed: 03/25/2025]  Open
3
Molina-Taborda A, Cossio P, Lopez-Acevedo O, Gabrié M. Active Learning of Boltzmann Samplers and Potential Energies with Quantum Mechanical Accuracy. J Chem Theory Comput 2024;20:8833-8843. [PMID: 39370622 DOI: 10.1021/acs.jctc.4c00506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/08/2024]
4
Calvani D, Louwersheimer R, Buda F. Effect of Anchoring Dynamics on Proton-Coupled Electron Transfer in the Ru(bda) Coordination Oligomer on a Graphitic Surface. Chempluschem 2024;89:e202400082. [PMID: 38625893 DOI: 10.1002/cplu.202400082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 04/15/2024] [Accepted: 04/16/2024] [Indexed: 04/18/2024]
5
Ruffman C, Steenbergen KG, Garden AL, Gaston N. Dynamic sampling of liquid metal structures for theoretical studies on catalysis. Chem Sci 2023;15:185-194. [PMID: 38131068 PMCID: PMC10732005 DOI: 10.1039/d3sc04416e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 11/22/2023] [Indexed: 12/23/2023]  Open
6
Gorantla KR, Mallik BS. Copper Complex Catalyzed Two-Electron and Proton Shuttle Mechanism of O-O Bond Formation from DFT-Based Metadynamics Simulations. J Phys Chem A 2023;127:3788-3795. [PMID: 37094099 DOI: 10.1021/acs.jpca.3c00088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
7
Zhang J, Zhang H, Qin Z, Kang Y, Hong X, Hou T. Quasiclassical Trajectory Simulation as a Protocol to Build Locally Accurate Machine Learning Potentials. J Chem Inf Model 2023;63:1133-1142. [PMID: 36791039 DOI: 10.1021/acs.jcim.2c01497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
8
Fan Y, Xia W, Ma C, Huang Y, Li S, Wang X, Qian C, Chen K, Liu D. Recent advances of computational studies on bioethanol to light olefin reactions using zeolite and metal oxide catalysts. Chem Eng Sci 2023. [DOI: 10.1016/j.ces.2023.118532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
9
Gorantla KR, Mallik BS. Three-Electron Two-Centered Bond and Single-Electron Transfer Mechanism of Water Splitting via a Copper-Bipyridine Complex. J Phys Chem A 2023;127:160-168. [PMID: 36594604 DOI: 10.1021/acs.jpca.2c07630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
10
Gorantla KR, Mallik BS. Non-heme oxoiron complexes as active intermediates in the water oxidation process with hydrogen/oxygen atom transfer reactions. Dalton Trans 2022;51:11899-11908. [PMID: 35876181 DOI: 10.1039/d2dt01295b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
11
Gorantla KR, Mallik BS. Mechanistic Insights into Cobalt-Based Water Oxidation Catalysis by DFT-Based Molecular Dynamics Simulations. J Phys Chem A 2022;126:3301-3310. [PMID: 35593706 DOI: 10.1021/acs.jpca.2c01043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
12
Ketkaew R, Creazzo F, Luber S. Machine Learning-Assisted Discovery of Hidden States in Expanded Free Energy Space. J Phys Chem Lett 2022;13:1797-1805. [PMID: 35171614 DOI: 10.1021/acs.jpclett.1c04004] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
13
Brémond É, Savarese M, Rega N, Ciofini I, Adamo C. Free Energy Profiles of Proton Transfer Reactions: Density Functional Benchmark from Biased Ab Initio Dynamics. J Chem Theory Comput 2022;18:1501-1511. [PMID: 35129987 DOI: 10.1021/acs.jctc.1c01002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
14
Creazzo F, Luber S. Water-Assisted Chemical Route Towards the Oxygen Evolution Reaction at the Hydrated (110) Ruthenium Oxide Surface: Heterogeneous Catalysis via DFT-MD and Metadynamics Simulations. Chemistry 2021;27:17024-17037. [PMID: 34486184 PMCID: PMC9293344 DOI: 10.1002/chem.202102356] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Indexed: 11/15/2022]
15
Ketkaew R, Creazzo F, Luber S. Closer Look at Inverse Electron Demand Diels–Alder and Nucleophilic Addition Reactions on s-Tetrazines Using Enhanced Sampling Methods. Top Catal 2021;65:1-17. [PMID: 35153451 PMCID: PMC8816378 DOI: 10.1007/s11244-021-01516-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/25/2021] [Indexed: 12/30/2022]
16
Li Y, Meijer EJ, Liao R. Elucidating the Role of Aqueous Solvent in an Iron‐Based Water Oxidation System by DFT‐based Molecular Simulation. ChemCatChem 2021. [DOI: 10.1002/cctc.202100616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
17
Menzel JP, Kloppenburg M, Belić J, de Groot HJM, Visscher L, Buda F. Efficient workflow for the investigation of the catalytic cycle of water oxidation catalysts: Combining GFN-xTB and density functional theory. J Comput Chem 2021;42:1885-1894. [PMID: 34278594 PMCID: PMC8456855 DOI: 10.1002/jcc.26721] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 07/02/2021] [Accepted: 07/05/2021] [Indexed: 11/26/2022]
18
Shao Y, de Groot HJM, Buda F. Two-Channel Model for Electron Transfer in a Dye-Catalyst-Dye Supramolecular Complex for Photocatalytic Water Splitting. CHEMSUSCHEM 2021;14:3155-3162. [PMID: 34097820 PMCID: PMC8453919 DOI: 10.1002/cssc.202100846] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 05/24/2021] [Indexed: 05/04/2023]
19
Gorantla KR, Mallik BS. Mechanistic Insight into the O2 Evolution Catalyzed by Copper Complexes with Tetra- and Pentadentate Ligands. J Phys Chem A 2021;125:6461-6473. [PMID: 34282907 DOI: 10.1021/acs.jpca.1c06008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
20
Gorantla KR, Mallik BS. Mechanism and Dynamics of Formation of Bisoxo Intermediates and O-O Bond in the Catalytic Water Oxidation Process. J Phys Chem A 2021;125:279-290. [PMID: 33370125 DOI: 10.1021/acs.jpca.0c09943] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
21
Yang, de Groot HJM, Buda F. Tuning the Proton-Coupled Electron-Transfer Rate by Ligand Modification in Catalyst-Dye Supramolecular Complexes for Photocatalytic Water Splitting. CHEMSUSCHEM 2021;14:479-486. [PMID: 32871047 PMCID: PMC7821158 DOI: 10.1002/cssc.202001863] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 08/31/2020] [Indexed: 05/21/2023]
22
Collinge G, Yuk SF, Nguyen MT, Lee MS, Glezakou VA, Rousseau R. Effect of Collective Dynamics and Anharmonicity on Entropy in Heterogenous Catalysis: Building the Case for Advanced Molecular Simulations. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01501] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
23
Schilling M, Cunha RA, Luber S. Enhanced Ab Initio Molecular Dynamics Exploration Unveils the Complex Role of Different Intramolecular Bases on the Water Nucleophilic Attack Mechanism. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01422] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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